From 197cbbc2ad4ceadb0e09987820f19780f4846aa1 Mon Sep 17 00:00:00 2001
From: adelhpour <>
Date: Thu, 7 Dec 2023 19:13:36 -0800
Subject: [PATCH 1/4] GitHub actions workflow is created

This workflow

- runs if there is either a new pull request or a commit to the 'develop' branch

- tests all the python tests which are present in the 'tellurium/tests' repository

- upload the artifacts to PyPI in case a commit is made into the 'develop' repository and the tests are passed
---
 .github/workflows/main.yml | 48 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 48 insertions(+)
 create mode 100644 .github/workflows/main.yml

diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
new file mode 100644
index 00000000..1b3dfb75
--- /dev/null
+++ b/.github/workflows/main.yml
@@ -0,0 +1,48 @@
+name: Python Tests and Wheel
+
+on:
+  pull_request:
+    branches:
+      - '*'
+  push:
+    branches:
+      - develop
+
+jobs:
+  test-and-build:
+    runs-on: ubuntu-latest
+
+    steps:
+    - name: Checkout repository
+      uses: actions/checkout@v2
+
+    - name: Set up Python
+      uses: actions/setup-python@v2
+      with:
+        python-version: 3.11
+
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install -r requirements.txt
+
+    - name: Run Python Tests
+      run: |
+        pytest tellurium/tests
+      continue-on-error: true
+
+    - name: Build Wheel if Tests Pass
+      if: success()
+      run: |
+        python setup.py bdist_wheel
+      continue-on-error: true
+
+    - name: Upload to PyPI
+      if: success() && github.event_name == 'push' && github.ref == 'refs/heads/develop'
+      run: |
+        python -m pip install --upgrade pip
+        pip install twine
+        twine upload dist/*
+      env:
+        TWINE_USERNAME: __token__
+        TWINE_PASSWORD: ${{ secrets.PYPI_TOKEN }}

From b2f88598df29c46e3b63c9fa35e60bc49bf4d025 Mon Sep 17 00:00:00 2001
From: adelhpour <>
Date: Thu, 7 Dec 2023 19:22:57 -0800
Subject: [PATCH 2/4] In GitHub workflow:

- libncurses is now install before running the tests

- a check if the version is changed is added before uploading the artifacts
---
 .github/workflows/main.yml | 7 ++++++-
 1 file changed, 6 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index 1b3dfb75..23485b99 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -21,6 +21,11 @@ jobs:
       with:
         python-version: 3.11
 
+    - name: Install libncurses.so.5
+      run: |
+        sudo apt-get update
+        sudo apt-get install -y libncurses5
+
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip
@@ -38,7 +43,7 @@ jobs:
       continue-on-error: true
 
     - name: Upload to PyPI
-      if: success() && github.event_name == 'push' && github.ref == 'refs/heads/develop'
+      if: success() && github.event_name == 'push' && github.ref == 'refs/heads/develop' && github.event.before != '0000000000000000000000000000000000000000' && paths('tellurium/Versions.txt')
       run: |
         python -m pip install --upgrade pip
         pip install twine

From a8928c0db30cbba0b3c5750d20e75b8a0be9b1f2 Mon Sep 17 00:00:00 2001
From: adelhpour <>
Date: Thu, 7 Dec 2023 19:24:03 -0800
Subject: [PATCH 3/4] In GitHub workflow:

- continue on error action is removed
---
 .github/workflows/main.yml | 2 --
 1 file changed, 2 deletions(-)

diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index 23485b99..5f7b4d48 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -34,13 +34,11 @@ jobs:
     - name: Run Python Tests
       run: |
         pytest tellurium/tests
-      continue-on-error: true
 
     - name: Build Wheel if Tests Pass
       if: success()
       run: |
         python setup.py bdist_wheel
-      continue-on-error: true
 
     - name: Upload to PyPI
       if: success() && github.event_name == 'push' && github.ref == 'refs/heads/develop' && github.event.before != '0000000000000000000000000000000000000000' && paths('tellurium/Versions.txt')

From abfd715a8a1737078948aa1a697cdd83441d6f77 Mon Sep 17 00:00:00 2001
From: adelhpour <>
Date: Thu, 7 Dec 2023 19:25:50 -0800
Subject: [PATCH 4/4] In GitHub workflow:

- removing the check on the change in the versions.txt file
---
 .github/workflows/main.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index 5f7b4d48..6f3bd7dc 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -41,7 +41,7 @@ jobs:
         python setup.py bdist_wheel
 
     - name: Upload to PyPI
-      if: success() && github.event_name == 'push' && github.ref == 'refs/heads/develop' && github.event.before != '0000000000000000000000000000000000000000' && paths('tellurium/Versions.txt')
+      if: success() && github.event_name == 'push' && github.ref == 'refs/heads/develop'
       run: |
         python -m pip install --upgrade pip
         pip install twine