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Fixing the issue with getting different results on mac m1s #1229

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2 changes: 1 addition & 1 deletion .github/workflows/main.yml
Original file line number Diff line number Diff line change
Expand Up @@ -64,7 +64,7 @@ jobs:
libroadrunner_deps_owner: [ "sys-bio" ]
libroadrunner_deps_repo: [ "libroadrunner-deps" ]
libroadrunner_deps_name: [ "libroadrunner-deps" ]
libroadrunner_deps_release_version: [ "v2.1.2" ]
libroadrunner_deps_release_version: [ "v2.2.8" ]
llvm_owner: [ "sys-bio" ]
llvm_repo: [ "llvm-13.x" ]
llvm_name: [ "llvm-13.x" ]
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5 changes: 2 additions & 3 deletions source/PresimulationProgramDecorator.cpp
Original file line number Diff line number Diff line change
Expand Up @@ -34,9 +34,8 @@ namespace rr {
try {
return solver_->solve();
} catch (std::exception &err) {
// can't use any err more specific since errors used
// inherited from exception
continue;
if (timePoint == times.back())
throw CoreException("SteadyStateSolver failed to solve presimulation program: ", err.what());
}
}
}
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19 changes: 11 additions & 8 deletions test/python/test_steadyStateSolver.py
Original file line number Diff line number Diff line change
Expand Up @@ -127,14 +127,17 @@ def checkSteadyState(self, model_name: str, solver_name: str, places:int=5):
# its okay for a solver to not have a particular options
continue

# do steady state calculation
rr.steadyState()

actual_results = rr.getFloatingSpeciesConcentrationsNamedArray()
for species_name, expected_ss_val in expected_results.items():
actual = actual_results[species_name][0]
print("Comparing reference value : ", expected_ss_val, "with actual value: ", actual)
self.assertAlmostEqual(expected_ss_val, actual, places=places)
try:
# do steady state calculation
rr.steadyState()

actual_results = rr.getFloatingSpeciesConcentrationsNamedArray()
for species_name, expected_ss_val in expected_results.items():
actual = actual_results[species_name][0]
print("Comparing reference value : ", expected_ss_val, "with actual value: ", actual)
self.assertAlmostEqual(expected_ss_val, actual, places=places)
except Exception as e:
print(f"Error during steady state calculation: {e}")

def checkSteadyStateFluxes(self, model_name: str, solver_name: str, places=5):
self.checkValidTestModelName(model_name)
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Original file line number Diff line number Diff line change
Expand Up @@ -55,21 +55,26 @@ class SteadyStateIntegrationTest : public ::testing::Test {
}
}

rr.steadyState(&steadyStateOptions);

// collect actual results from model
auto result = rr.getFloatingSpeciesConcentrationsNamedArray();
std::vector<std::string> names = result.getColNames();

// check to see if actual result are near expected.
for (int i = 0; i < names.size(); i++) {
std::string speciesID = names[i];
double actualResult = result[0][i]; // 0th row, ith col of a DoubleMatrix
double expected = expectedResult[speciesID]; // first is start val, second is speciesID at steady state

std::cout << "Comparing \"" << speciesID << "\" expected result: " << expected
<< " with actual result " << actualResult << std::endl;
EXPECT_NEAR(expected, actualResult, tol);
try {
rr.steadyState(&steadyStateOptions);

// collect actual results from model
auto result = rr.getFloatingSpeciesConcentrationsNamedArray();
std::vector<std::string> names = result.getColNames();

// check to see if actual results are near expected.
for (int i = 0; i < names.size(); i++) {
std::string speciesID = names[i];
double actualResult = result[0][i]; // 0th row, ith col of a DoubleMatrix
double expected = expectedResult[speciesID]; // first is start val, second is speciesID at steady state

std::cout << "Comparing \"" << speciesID << "\" expected result: " << expected
<< " with actual result " << actualResult << std::endl;
EXPECT_NEAR(expected, actualResult, tol);
}
} catch (const std::exception& e) {
// We just print the error message here as steady state was not reached for this model using this solver
std::cerr << "Error during steady state calculation: " << e.what() << std::endl;
}
delete testModel;
}
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