dxapp.json

{
  "outputSpec": [
    {
      "name": "fusions",
      "label": "Fusions File",
      "class": "file"
    }
  ],
  "inputSpec": [
    {
      "name": "BAM",
      "label": "RNASeq Bam file",
      "class": "file",
      "patterns": [
        "*.bam"
      ],
      "optional": false
    }
  ],
  "details": {
    "contactEmail": "clay.mcleod@stjude.org"
  },
  "version": "1.1.1",
  "dxapi": "1.0.0",
  "summary": "Fusion gene detection by comparison to known breakpoints",
  "openSource": true,
  "authorizedUsers": [
    "user-clmcleod",
    "user-snewman",
    "user-appdpdnanexus_stjude.org",
    "user-appdddnanexus_stjude.org",
    "org-stjude_cloud_app_runners",
    "org-stjude_cloud"
  ],
  "regionalOptions": {
    "azure:westus": {
      "systemRequirements": {
        "*": {
          "instanceType": "azure:mem2_ssd1_x4"
        }
      }
    },
    "aws:us-east-1": {
      "systemRequirements": {
        "*": {
          "instanceType": "mem2_ssd1_x4"
        }
      }
    }
  },
  "developers": [
    "user-clmcleod",
    "user-athrashe"
  ],
  "billTo": "org-stjude_cloud",
  "runSpec": {
    "execDepends": [
      {
        "name": "samtools"
      }
    ],
    "file": "src/code.sh",
    "release": "20.04",
    "version": "0",
    "interpreter": "bash",
    "distribution": "Ubuntu"
  },
  "name": "stjude_fuzzion",
  "title": "Fuzzion (St. Jude)"
}