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144 followers · 86 following

Achievements

Achievement: Pair ExtraordinaireAchievement: Starstruckx2Achievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2

Achievements

Achievement: Pair ExtraordinaireAchievement: Starstruckx2Achievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2

Organizations

@mskcc @NYU-BFX @NYU-Molecular-Pathology

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  1. Bioinformatics Public

    Bioinformatics analysis scripts, workflows, general code examples

    Shell 53 15

  2. nextflow-demos Public

    Example Nextflow pipelines and programming techniques

    Nextflow 106 26

  3. NYU-Molecular-Pathology/NGS580-nf Public

    Target exome sequencing analysis for NYU NGS580 gene panel

    Nextflow 10 5

  4. IGV-snapshot-automator Public

    Script to automatically create and run IGV snapshot batchscripts

    Python 141 50

  5. NYU-Molecular-Pathology/IR-interpreter Public

    Web app for clinical interpretation of Ion Reporter variant results

    Python 4 2

  6. mskcc/pluto-cwl Public

    CWL workflows for helix filter scripts

    Python 1 6

87 contributions in the last year

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Activity overview

Contributed to stevekm/nextflow-demos, nextflow-io/nextflow, seqeralabs/seqera-kit and 26 other repositories
Loading A graph representing stevekm's contributions from April 21, 2024 to April 22, 2025. The contributions are 49% issues, 46% commits, 4% pull requests, 1% code review.

Contribution activity

April 2025

Created 3 repositories
Opened 2 pull requests in 2 repositories
  • Tmp
    This contribution was made on Apr 18

Created an issue in seqeralabs/seqera-kit that received 3 comments

'--cli=...' does not work with tw sub-command args

due to #212 I am trying to re-work my seqerakit YAML files so that I can remove args from the config that might not be present in all configs (sinc…

3 comments
Opened 3 other issues in 2 repositories
Started 1 discussion in 1 repository
community/community
4 contributions in private repositories Apr 18
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