Making Protein Design accessible to all via Google Colab!

Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/content/10.1101/2020.11.29.402743v1.abstract

Protein hallucination and inpainting with RoseTTAFold

🧬 ManyFold: An efficient and flexible library for training and validating protein folding models

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

Open source code for AlphaFold 2.

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

Code for the ProteinMPNN paper

Code for running RFdiffusion

alphafold FAPE loss