From 9231d044cbdb08453c18570bc99c252ce8bf19e4 Mon Sep 17 00:00:00 2001 From: Alexandru Foias Date: Tue, 11 Aug 2020 15:26:04 -0400 Subject: [PATCH] Add dataset fslAchieva & fslPrisma (#21) * fix defaced image * change permissions * add fslPrisma dataset * rename sapienza to fslAchieva * deface images * fix defacing dresden02_T2w * remove other defaced images * rename test * fix rename --- ...lAchieva01_T1w_RPI_r_labels-manual.nii.gz} | 0 ...lAchieva01_T2star_rms_gmseg-manual.nii.gz} | 0 ...slAchieva01_acq-T1w_MTS_seg-manual.nii.gz} | 0 ...ub-sapienza01_T2star_rms_gmseg-manual.json | 0 ...hieva01_dwi_moco_dwi_mean_seg-manual.json} | 0 ...eva01_dwi_moco_dwi_mean_seg-manual.nii.gz} | 0 ...slAchieva03_acq-T1w_MTS_seg-manual.nii.gz} | 0 ...slAchieva04_T2star_rms_gmseg-manual.nii.gz | 1 + ...slAchieva04_acq-T1w_MTS_seg-manual.nii.gz} | 0 ...slAchieva05_acq-T1w_MTS_seg-manual.nii.gz} | 0 ...slAchieva06_acq-T1w_MTS_seg-manual.nii.gz} | 0 .../anat/sub-fslAchieva01_T1w.json | 0 .../anat/sub-fslAchieva01_T1w.nii.gz | 0 .../anat/sub-fslAchieva01_T2star.json | 0 .../anat/sub-fslAchieva01_T2star.nii.gz | 0 .../anat/sub-fslAchieva01_T2w.json | 0 .../anat/sub-fslAchieva01_T2w.nii.gz | 0 .../anat/sub-fslAchieva01_acq-MToff_MTS.json | 0 .../sub-fslAchieva01_acq-MToff_MTS.nii.gz | 0 .../anat/sub-fslAchieva01_acq-MTon_MTS.json | 0 .../anat/sub-fslAchieva01_acq-MTon_MTS.nii.gz | 0 .../anat/sub-fslAchieva01_acq-T1w_MTS.json | 0 .../anat/sub-fslAchieva01_acq-T1w_MTS.nii.gz | 0 .../dwi/sub-fslAchieva01_dwi.bval | 0 .../dwi/sub-fslAchieva01_dwi.bvec | 0 .../dwi/sub-fslAchieva01_dwi.json | 0 .../dwi/sub-fslAchieva01_dwi.nii.gz | 0 .../anat/sub-fslAchieva02_T1w.json | 0 .../anat/sub-fslAchieva02_T1w.nii.gz | 0 .../anat/sub-fslAchieva02_T2star.json | 0 .../anat/sub-fslAchieva02_T2star.nii.gz | 0 .../anat/sub-fslAchieva02_T2w.json | 0 .../anat/sub-fslAchieva02_T2w.nii.gz | 0 .../anat/sub-fslAchieva02_acq-MToff_MTS.json | 0 .../sub-fslAchieva02_acq-MToff_MTS.nii.gz | 0 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.../dwi/sub-fslAchieva06_dwi.bval | 0 .../dwi/sub-fslAchieva06_dwi.bvec | 0 .../dwi/sub-fslAchieva06_dwi.json | 0 .../dwi/sub-fslAchieva06_dwi.nii.gz | 0 sub-fslPrisma01/anat/sub-fslPrisma01_T1w.json | 80 ++++++++++++++ .../anat/sub-fslPrisma01_T1w.nii.gz | 1 + .../anat/sub-fslPrisma01_T2star.json | 99 +++++++++++++++++ .../anat/sub-fslPrisma01_T2star.nii.gz | 1 + sub-fslPrisma01/anat/sub-fslPrisma01_T2w.json | 83 ++++++++++++++ .../anat/sub-fslPrisma01_T2w.nii.gz | 1 + .../anat/sub-fslPrisma01_acq-MToff_MTS.json | 77 +++++++++++++ .../anat/sub-fslPrisma01_acq-MToff_MTS.nii.gz | 1 + .../anat/sub-fslPrisma01_acq-MTon_MTS.json | 78 +++++++++++++ .../anat/sub-fslPrisma01_acq-MTon_MTS.nii.gz | 1 + .../anat/sub-fslPrisma01_acq-T1w_MTS.json | 77 +++++++++++++ .../anat/sub-fslPrisma01_acq-T1w_MTS.nii.gz | 1 + sub-fslPrisma01/dwi/sub-fslPrisma01_dwi.bval | 1 + sub-fslPrisma01/dwi/sub-fslPrisma01_dwi.bvec | 3 + sub-fslPrisma01/dwi/sub-fslPrisma01_dwi.json | 103 ++++++++++++++++++ .../dwi/sub-fslPrisma01_dwi.nii.gz | 1 + sub-fslPrisma02/anat/sub-fslPrisma02_T1w.json | 80 ++++++++++++++ .../anat/sub-fslPrisma02_T1w.nii.gz | 1 + .../anat/sub-fslPrisma02_T2star.json | 99 +++++++++++++++++ .../anat/sub-fslPrisma02_T2star.nii.gz | 1 + sub-fslPrisma02/anat/sub-fslPrisma02_T2w.json | 83 ++++++++++++++ .../anat/sub-fslPrisma02_T2w.nii.gz | 1 + .../anat/sub-fslPrisma02_acq-MToff_MTS.json | 77 +++++++++++++ .../anat/sub-fslPrisma02_acq-MToff_MTS.nii.gz | 1 + .../anat/sub-fslPrisma02_acq-MTon_MTS.json | 78 +++++++++++++ .../anat/sub-fslPrisma02_acq-MTon_MTS.nii.gz | 1 + .../anat/sub-fslPrisma02_acq-T1w_MTS.json | 77 +++++++++++++ .../anat/sub-fslPrisma02_acq-T1w_MTS.nii.gz | 1 + sub-fslPrisma02/dwi/sub-fslPrisma02_dwi.bval | 1 + sub-fslPrisma02/dwi/sub-fslPrisma02_dwi.bvec | 3 + sub-fslPrisma02/dwi/sub-fslPrisma02_dwi.json | 103 ++++++++++++++++++ .../dwi/sub-fslPrisma02_dwi.nii.gz | 1 + sub-fslPrisma03/anat/sub-fslPrisma03_T1w.json | 80 ++++++++++++++ .../anat/sub-fslPrisma03_T1w.nii.gz | 1 + .../anat/sub-fslPrisma03_T2star.json | 99 +++++++++++++++++ .../anat/sub-fslPrisma03_T2star.nii.gz | 1 + sub-fslPrisma03/anat/sub-fslPrisma03_T2w.json | 83 ++++++++++++++ .../anat/sub-fslPrisma03_T2w.nii.gz | 1 + .../anat/sub-fslPrisma03_acq-MToff_MTS.json | 77 +++++++++++++ .../anat/sub-fslPrisma03_acq-MToff_MTS.nii.gz | 1 + .../anat/sub-fslPrisma03_acq-MTon_MTS.json | 78 +++++++++++++ .../anat/sub-fslPrisma03_acq-MTon_MTS.nii.gz | 1 + .../anat/sub-fslPrisma03_acq-T1w_MTS.json | 77 +++++++++++++ .../anat/sub-fslPrisma03_acq-T1w_MTS.nii.gz | 1 + sub-fslPrisma03/dwi/sub-fslPrisma03_dwi.bval | 1 + sub-fslPrisma03/dwi/sub-fslPrisma03_dwi.bvec | 3 + sub-fslPrisma03/dwi/sub-fslPrisma03_dwi.json | 103 ++++++++++++++++++ .../dwi/sub-fslPrisma03_dwi.nii.gz | 1 + sub-fslPrisma04/anat/sub-fslPrisma04_T1w.json | 80 ++++++++++++++ .../anat/sub-fslPrisma04_T1w.nii.gz | 1 + .../anat/sub-fslPrisma04_T2star.json | 99 +++++++++++++++++ .../anat/sub-fslPrisma04_T2star.nii.gz | 1 + sub-fslPrisma04/anat/sub-fslPrisma04_T2w.json | 83 ++++++++++++++ .../anat/sub-fslPrisma04_T2w.nii.gz | 1 + .../anat/sub-fslPrisma04_acq-MToff_MTS.json | 77 +++++++++++++ .../anat/sub-fslPrisma04_acq-MToff_MTS.nii.gz | 1 + .../anat/sub-fslPrisma04_acq-MTon_MTS.json | 78 +++++++++++++ .../anat/sub-fslPrisma04_acq-MTon_MTS.nii.gz | 1 + .../anat/sub-fslPrisma04_acq-T1w_MTS.json | 77 +++++++++++++ .../anat/sub-fslPrisma04_acq-T1w_MTS.nii.gz | 1 + sub-fslPrisma04/dwi/sub-fslPrisma04_dwi.bval | 1 + sub-fslPrisma04/dwi/sub-fslPrisma04_dwi.bvec | 3 + sub-fslPrisma04/dwi/sub-fslPrisma04_dwi.json | 103 ++++++++++++++++++ .../dwi/sub-fslPrisma04_dwi.nii.gz | 1 + sub-fslPrisma05/anat/sub-fslPrisma05_T1w.json | 80 ++++++++++++++ .../anat/sub-fslPrisma05_T1w.nii.gz | 1 + .../anat/sub-fslPrisma05_T2star.json | 99 +++++++++++++++++ .../anat/sub-fslPrisma05_T2star.nii.gz | 1 + sub-fslPrisma05/anat/sub-fslPrisma05_T2w.json | 83 ++++++++++++++ .../anat/sub-fslPrisma05_T2w.nii.gz | 1 + .../anat/sub-fslPrisma05_acq-MToff_MTS.json | 77 +++++++++++++ .../anat/sub-fslPrisma05_acq-MToff_MTS.nii.gz | 1 + .../anat/sub-fslPrisma05_acq-MTon_MTS.json | 78 +++++++++++++ .../anat/sub-fslPrisma05_acq-MTon_MTS.nii.gz | 1 + .../anat/sub-fslPrisma05_acq-T1w_MTS.json | 77 +++++++++++++ .../anat/sub-fslPrisma05_acq-T1w_MTS.nii.gz | 1 + sub-fslPrisma05/dwi/sub-fslPrisma05_dwi.bval | 1 + sub-fslPrisma05/dwi/sub-fslPrisma05_dwi.bvec | 3 + sub-fslPrisma05/dwi/sub-fslPrisma05_dwi.json | 103 ++++++++++++++++++ .../dwi/sub-fslPrisma05_dwi.nii.gz | 1 + sub-fslPrisma06/anat/sub-fslPrisma06_T1w.json | 80 ++++++++++++++ .../anat/sub-fslPrisma06_T1w.nii.gz | 1 + .../anat/sub-fslPrisma06_T2star.json | 99 +++++++++++++++++ .../anat/sub-fslPrisma06_T2star.nii.gz | 1 + sub-fslPrisma06/anat/sub-fslPrisma06_T2w.json | 83 ++++++++++++++ .../anat/sub-fslPrisma06_T2w.nii.gz | 1 + .../anat/sub-fslPrisma06_acq-MToff_MTS.json | 77 +++++++++++++ .../anat/sub-fslPrisma06_acq-MToff_MTS.nii.gz | 1 + .../anat/sub-fslPrisma06_acq-MTon_MTS.json | 78 +++++++++++++ .../anat/sub-fslPrisma06_acq-MTon_MTS.nii.gz | 1 + .../anat/sub-fslPrisma06_acq-T1w_MTS.json | 77 +++++++++++++ .../anat/sub-fslPrisma06_acq-T1w_MTS.nii.gz | 1 + sub-fslPrisma06/dwi/sub-fslPrisma06_dwi.bval | 1 + sub-fslPrisma06/dwi/sub-fslPrisma06_dwi.bvec | 3 + sub-fslPrisma06/dwi/sub-fslPrisma06_dwi.json | 103 ++++++++++++++++++ .../dwi/sub-fslPrisma06_dwi.nii.gz | 1 + 203 files changed, 3649 insertions(+) rename derivatives/labels/{sub-sapienza01/anat/sub-sapienza01_T1w_RPI_r_labels-manual.nii.gz => sub-fslAchieva01/anat/sub-fslAchieva01_T1w_RPI_r_labels-manual.nii.gz} (100%) rename derivatives/labels/{sub-sapienza01/anat/sub-sapienza01_T2star_rms_gmseg-manual.nii.gz => sub-fslAchieva01/anat/sub-fslAchieva01_T2star_rms_gmseg-manual.nii.gz} (100%) rename derivatives/labels/{sub-sapienza01/anat/sub-sapienza01_acq-T1w_MTS_seg-manual.nii.gz => sub-fslAchieva01/anat/sub-fslAchieva01_acq-T1w_MTS_seg-manual.nii.gz} (100%) rename derivatives/labels/{sub-sapienza01 => sub-fslAchieva01}/anat/sub-sapienza01_T2star_rms_gmseg-manual.json (100%) rename derivatives/labels/{sub-sapienza01/dwi/sub-sapienza01_dwi_moco_dwi_mean_seg-manual.json => sub-fslAchieva01/dwi/sub-fslAchieva01_dwi_moco_dwi_mean_seg-manual.json} (100%) rename derivatives/labels/{sub-sapienza01/dwi/sub-sapienza01_dwi_moco_dwi_mean_seg-manual.nii.gz => sub-fslAchieva01/dwi/sub-fslAchieva01_dwi_moco_dwi_mean_seg-manual.nii.gz} (100%) rename derivatives/labels/{sub-sapienza03/anat/sub-sapienza03_acq-T1w_MTS_seg-manual.nii.gz => sub-fslAchieva03/anat/sub-fslAchieva03_acq-T1w_MTS_seg-manual.nii.gz} (100%) create mode 100755 derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2star_rms_gmseg-manual.nii.gz rename derivatives/labels/{sub-sapienza04/anat/sub-sapienza04_acq-T1w_MTS_seg-manual.nii.gz => sub-fslAchieva04/anat/sub-fslAchieva04_acq-T1w_MTS_seg-manual.nii.gz} (100%) rename derivatives/labels/{sub-sapienza05/anat/sub-sapienza05_acq-T1w_MTS_seg-manual.nii.gz => sub-fslAchieva05/anat/sub-fslAchieva05_acq-T1w_MTS_seg-manual.nii.gz} (100%) rename derivatives/labels/{sub-sapienza06/anat/sub-sapienza06_acq-T1w_MTS_seg-manual.nii.gz => sub-fslAchieva06/anat/sub-fslAchieva06_acq-T1w_MTS_seg-manual.nii.gz} (100%) rename sub-sapienza01/anat/sub-sapienza01_T1w.json => sub-fslAchieva01/anat/sub-fslAchieva01_T1w.json (100%) rename sub-sapienza01/anat/sub-sapienza01_T1w.nii.gz => sub-fslAchieva01/anat/sub-fslAchieva01_T1w.nii.gz (100%) rename sub-sapienza01/anat/sub-sapienza01_T2star.json => sub-fslAchieva01/anat/sub-fslAchieva01_T2star.json (100%) rename sub-sapienza01/anat/sub-sapienza01_T2star.nii.gz => sub-fslAchieva01/anat/sub-fslAchieva01_T2star.nii.gz (100%) rename sub-sapienza01/anat/sub-sapienza01_T2w.json => sub-fslAchieva01/anat/sub-fslAchieva01_T2w.json (100%) rename sub-sapienza01/anat/sub-sapienza01_T2w.nii.gz => sub-fslAchieva01/anat/sub-fslAchieva01_T2w.nii.gz (100%) rename sub-sapienza01/anat/sub-sapienza01_acq-MToff_MTS.json => sub-fslAchieva01/anat/sub-fslAchieva01_acq-MToff_MTS.json (100%) rename sub-sapienza01/anat/sub-sapienza01_acq-MToff_MTS.nii.gz => sub-fslAchieva01/anat/sub-fslAchieva01_acq-MToff_MTS.nii.gz (100%) rename sub-sapienza01/anat/sub-sapienza01_acq-MTon_MTS.json => sub-fslAchieva01/anat/sub-fslAchieva01_acq-MTon_MTS.json (100%) rename sub-sapienza01/anat/sub-sapienza01_acq-MTon_MTS.nii.gz => sub-fslAchieva01/anat/sub-fslAchieva01_acq-MTon_MTS.nii.gz (100%) rename sub-sapienza01/anat/sub-sapienza01_acq-T1w_MTS.json => sub-fslAchieva01/anat/sub-fslAchieva01_acq-T1w_MTS.json (100%) rename sub-sapienza01/anat/sub-sapienza01_acq-T1w_MTS.nii.gz => sub-fslAchieva01/anat/sub-fslAchieva01_acq-T1w_MTS.nii.gz (100%) rename sub-sapienza01/dwi/sub-sapienza01_dwi.bval => sub-fslAchieva01/dwi/sub-fslAchieva01_dwi.bval (100%) rename sub-sapienza01/dwi/sub-sapienza01_dwi.bvec => sub-fslAchieva01/dwi/sub-fslAchieva01_dwi.bvec (100%) rename sub-sapienza01/dwi/sub-sapienza01_dwi.json => sub-fslAchieva01/dwi/sub-fslAchieva01_dwi.json (100%) rename sub-sapienza01/dwi/sub-sapienza01_dwi.nii.gz => sub-fslAchieva01/dwi/sub-fslAchieva01_dwi.nii.gz (100%) rename sub-sapienza02/anat/sub-sapienza02_T1w.json => sub-fslAchieva02/anat/sub-fslAchieva02_T1w.json (100%) rename sub-sapienza02/anat/sub-sapienza02_T1w.nii.gz => sub-fslAchieva02/anat/sub-fslAchieva02_T1w.nii.gz (100%) rename sub-sapienza02/anat/sub-sapienza02_T2star.json => sub-fslAchieva02/anat/sub-fslAchieva02_T2star.json (100%) rename sub-sapienza02/anat/sub-sapienza02_T2star.nii.gz => sub-fslAchieva02/anat/sub-fslAchieva02_T2star.nii.gz (100%) rename sub-sapienza02/anat/sub-sapienza02_T2w.json => sub-fslAchieva02/anat/sub-fslAchieva02_T2w.json (100%) rename sub-sapienza02/anat/sub-sapienza02_T2w.nii.gz => sub-fslAchieva02/anat/sub-fslAchieva02_T2w.nii.gz (100%) rename 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sub-sapienza06/dwi/sub-sapienza06_dwi.nii.gz rename to sub-fslAchieva06/dwi/sub-fslAchieva06_dwi.nii.gz diff --git a/sub-fslPrisma01/anat/sub-fslPrisma01_T1w.json b/sub-fslPrisma01/anat/sub-fslPrisma01_T1w.json new file mode 100644 index 00000000..afb377e5 --- /dev/null +++ b/sub-fslPrisma01/anat/sub-fslPrisma01_T1w.json @@ -0,0 +1,80 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "ImagingFrequency": 123.258, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Prisma", + "InstitutionName": "Fondazione_Santa_Lucia", + "InstitutionalDepartmentName": "Neuroimmagini", + "InstitutionAddress": "_Via_Ardeatina_306_Roma_RM_IT_00179", + "DeviceSerialNumber": "166157", + "StationName": "AWP166157", + "BodyPartExamined": "HEADNECK", + "PatientPosition": "HFS", + "ProcedureStepDescription": "GIOVE", + "SoftwareVersions": "syngo_MR_E11", + "MRAcquisitionType": "3D", + "SeriesDescription": "T1w", + "ProtocolName": "T1w", + "ScanningSequence": "GR_IR", + "SequenceVariant": "SK_SP_MP", + "ScanOptions": "IR", + "SequenceName": "_tfl3d1_16", + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "NORM", + "DIS3D", + "DIS2D" + ], + "SeriesNumber": 2, + "AcquisitionTime": "11:17:15.750000", + "AcquisitionNumber": 1, + "SliceThickness": 1, + "SAR": 0.057859, + "EchoTime": 0.00372, + "RepetitionTime": 2, + "InversionTime": 1, + "FlipAngle": 9, + "PartialFourier": 1, + "BaseResolution": 320, + "ShimSetting": [ + -245, + 4551, + -2056, + 22, + 45, + -313, + 109, + 74 + ], + "TxRefAmp": 260.558, + "PhaseResolution": 1, + "ReceiveCoilName": "HeadNeck_64", + "ReceiveCoilActiveElements": "HC1-7;NC1,2", + "CoilString": "HC1-7;NC1_2", + "PulseSequenceDetails": "%SiemensSeq%_tfl", + "RefLinesPE": 24, + "ConsistencyInfo": "N4_VE11E_LATEST_20181129", + "PercentPhaseFOV": 81.25, + "PercentSampling": 100, + "PhaseEncodingSteps": 259, + "AcquisitionMatrixPE": 260, + "ReconMatrixPE": 260, + "ParallelReductionFactorInPlane": 2, + "PixelBandwidth": 150, + "DwellTime": 1.04e-05, + "ImageOrientationPatientDICOM": [ + 0, + 1, + 0, + -0.0104717, + 0, + -0.999945 + ], + "InPlanePhaseEncodingDirectionDICOM": "ROW", + "ConversionSoftware": "dcm2niix", + "ConversionSoftwareVersion": "v1.0.20200331", + "Dcm2bidsVersion": "2.1.4" +} \ No newline at end of file diff --git a/sub-fslPrisma01/anat/sub-fslPrisma01_T1w.nii.gz b/sub-fslPrisma01/anat/sub-fslPrisma01_T1w.nii.gz new file mode 100644 index 00000000..b6bbc7f3 --- /dev/null +++ b/sub-fslPrisma01/anat/sub-fslPrisma01_T1w.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14750211--61d8ddb7177098bddbe4367edec41ae181961a90117b654ce1a806d9124506bf.nii.gz diff --git a/sub-fslPrisma01/anat/sub-fslPrisma01_T2star.json b/sub-fslPrisma01/anat/sub-fslPrisma01_T2star.json new file mode 100644 index 00000000..f67bc7a3 --- /dev/null +++ b/sub-fslPrisma01/anat/sub-fslPrisma01_T2star.json @@ -0,0 +1,99 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "ImagingFrequency": 123.258, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Prisma", + "InstitutionName": "Fondazione_Santa_Lucia", + "InstitutionalDepartmentName": "Neuroimmagini", + "InstitutionAddress": "_Via_Ardeatina_306_Roma_RM_IT_00179", + "DeviceSerialNumber": "166157", + "StationName": "AWP166157", + "BodyPartExamined": "CSPINE", + "PatientPosition": "HFS", + "ProcedureStepDescription": "GIOVE", + "SoftwareVersions": "syngo_MR_E11", + "MRAcquisitionType": "2D", + "SeriesDescription": "GRE-ME", + "ProtocolName": "GRE-ME", + "ScanningSequence": "GR", + "SequenceVariant": "SP", + "ScanOptions": "SAT1", + "SequenceName": "_me2d1r3", + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "NORM", + "DIS2D" + ], + "SeriesNumber": 8, + "AcquisitionTime": "11:37:41.022500", + "AcquisitionNumber": 1, + "SliceThickness": 5, + "SpacingBetweenSlices": 5, + "SAR": 0.229204, + "NumberOfAverages": 2, + "EchoTime": 0.014, + "RepetitionTime": 0.6, + "FlipAngle": 30, + "PartialFourier": 1, + "BaseResolution": 448, + "ShimSetting": [ + -240, + 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"v1.0.20200331", + "Dcm2bidsVersion": "2.1.4" +} \ No newline at end of file diff --git a/sub-fslPrisma01/anat/sub-fslPrisma01_T2star.nii.gz b/sub-fslPrisma01/anat/sub-fslPrisma01_T2star.nii.gz new file mode 100644 index 00000000..7a5d8b09 --- /dev/null +++ b/sub-fslPrisma01/anat/sub-fslPrisma01_T2star.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2441206--07e986b7de454bc29605ff4890ed1bcbf6dd5fb4f732b8c8669db7241308071f.nii.gz diff --git a/sub-fslPrisma01/anat/sub-fslPrisma01_T2w.json b/sub-fslPrisma01/anat/sub-fslPrisma01_T2w.json new file mode 100644 index 00000000..b3d4908a --- /dev/null +++ b/sub-fslPrisma01/anat/sub-fslPrisma01_T2w.json @@ -0,0 +1,83 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "ImagingFrequency": 123.258, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Prisma", + "InstitutionName": "Fondazione_Santa_Lucia", + "InstitutionalDepartmentName": "Neuroimmagini", + "InstitutionAddress": "_Via_Ardeatina_306_Roma_RM_IT_00179", + "DeviceSerialNumber": "166157", + "StationName": "AWP166157", + "BodyPartExamined": "HEADNECK", + "PatientPosition": "HFS", + "ProcedureStepDescription": "GIOVE", + "SoftwareVersions": "syngo_MR_E11", + "MRAcquisitionType": "3D", + "SeriesDescription": "T2w", + "ProtocolName": "T2w", + "ScanningSequence": "SE", + "SequenceVariant": "SK_SP_OSP", + "ScanOptions": "PFP", + "SequenceName": "_spcR_100", + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "NORM", + "DIS3D", + "DIS2D" + ], + "SeriesNumber": 3, + "AcquisitionTime": "11:22:56.690000", + "AcquisitionNumber": 1, + "SliceThickness": 0.8, + "SAR": 0.539274, + "NumberOfAverages": 2, + "EchoTime": 0.12, + "RepetitionTime": 1.5, + "FlipAngle": 120, + "PartialFourier": 1, + "BaseResolution": 320, + "ShimSetting": [ + -182, + 4534, + -2159, + -283, + 156, + -280, + 803, + 107 + ], + "TxRefAmp": 283.957, + "PhaseResolution": 1, + "PhaseOversampling": 0.8, + "ReceiveCoilName": "Spine_32", + "ReceiveCoilActiveElements": "HC5-7;NC1,2;SP1", + "CoilString": "HC5-7;NC1_2;SP1", + "PulseSequenceDetails": "%SiemensSeq%_tse_vfl", + "RefLinesPE": 32, + "ConsistencyInfo": "N4_VE11E_LATEST_20181129", + "PercentPhaseFOV": 100, + "PercentSampling": 100, + "EchoTrainLength": 76, + "PhaseEncodingSteps": 422, + "AcquisitionMatrixPE": 320, + "ReconMatrixPE": 320, + "ParallelReductionFactorInPlane": 3, + "PixelBandwidth": 625, + "DwellTime": 2.5e-06, + "PhaseEncodingDirection": "j-", + "ImageOrientationPatientDICOM": [ + 2.39e-13, + 1, + 4.891e-12, + -0.0488498, + 4.897e-12, + -0.998806 + ], + "InPlanePhaseEncodingDirectionDICOM": "COL", + "ConversionSoftware": "dcm2niix", + "ConversionSoftwareVersion": "v1.0.20200331", + "Dcm2bidsVersion": "2.1.4" +} \ No newline at end of file diff --git a/sub-fslPrisma01/anat/sub-fslPrisma01_T2w.nii.gz b/sub-fslPrisma01/anat/sub-fslPrisma01_T2w.nii.gz new file mode 100644 index 00000000..aadb352c --- /dev/null +++ b/sub-fslPrisma01/anat/sub-fslPrisma01_T2w.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8019657--3da018515ed8e0e4995e80fe9a4d5bcb01084f630e1821e8fb146b3e5fb45b3b.nii.gz diff --git a/sub-fslPrisma01/anat/sub-fslPrisma01_acq-MToff_MTS.json b/sub-fslPrisma01/anat/sub-fslPrisma01_acq-MToff_MTS.json new file mode 100644 index 00000000..bf04cabd --- /dev/null +++ b/sub-fslPrisma01/anat/sub-fslPrisma01_acq-MToff_MTS.json @@ -0,0 +1,77 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "ImagingFrequency": 123.258, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Prisma", + "InstitutionName": "Fondazione_Santa_Lucia", + "InstitutionalDepartmentName": "Neuroimmagini", + "InstitutionAddress": "_Via_Ardeatina_306_Roma_RM_IT_00179", + "DeviceSerialNumber": "166157", + "StationName": "AWP166157", + "BodyPartExamined": "CSPINE", + "PatientPosition": "HFS", + "ProcedureStepDescription": "GIOVE", + "SoftwareVersions": "syngo_MR_E11", + "MRAcquisitionType": "3D", + "SeriesDescription": "GRE-MT0", + "ProtocolName": "GRE-MT0", + "ScanningSequence": "GR", + "SequenceVariant": "SP", + "SequenceName": "_fl3d1", + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "NORM", + "DIS2D" + ], + "SeriesNumber": 6, + "AcquisitionTime": "11:34:24.937500", + "AcquisitionNumber": 1, + "SliceThickness": 5, + "SAR": 0.00541715, + "EchoTime": 0.00313, + "RepetitionTime": 0.035, + "FlipAngle": 9, + "PartialFourier": 1, + "BaseResolution": 256, + "ShimSetting": [ + -225, + 4445, + -2195, + -1557, + -73, + 1538, + -681, + -47 + ], + "TxRefAmp": 283.957, + "PhaseResolution": 1, + "ReceiveCoilName": "HeadNeck_64", + "ReceiveCoilActiveElements": "HC6,7;NC1,2;SP1", + "CoilString": "HC6_7;NC1_2;SP1", + "PulseSequenceDetails": "%SiemensSeq%_gre", + "RefLinesPE": 32, + "ConsistencyInfo": "N4_VE11E_LATEST_20181129", + "PercentPhaseFOV": 100, + "PercentSampling": 100, + "PhaseEncodingSteps": 255, + "AcquisitionMatrixPE": 256, + "ReconMatrixPE": 256, + "ParallelReductionFactorInPlane": 2, + "PixelBandwidth": 260, + "DwellTime": 7.5e-06, + "ImageOrientationPatientDICOM": [ + 0.996637, + 0, + -0.0819385, + 0, + 1, + 0 + ], + "InPlanePhaseEncodingDirectionDICOM": "COL", + "ConversionSoftware": "dcm2niix", + "ConversionSoftwareVersion": "v1.0.20200331", + "Dcm2bidsVersion": "2.1.4" +} \ No newline at end of file diff --git a/sub-fslPrisma01/anat/sub-fslPrisma01_acq-MToff_MTS.nii.gz b/sub-fslPrisma01/anat/sub-fslPrisma01_acq-MToff_MTS.nii.gz new file mode 100644 index 00000000..1706ec4b --- /dev/null +++ b/sub-fslPrisma01/anat/sub-fslPrisma01_acq-MToff_MTS.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1607325--4cb75666cf9f5ffe34ce3d1eb59063da7e3a5c1af87c5c2f2148abb7107228cb.nii.gz diff --git a/sub-fslPrisma01/anat/sub-fslPrisma01_acq-MTon_MTS.json b/sub-fslPrisma01/anat/sub-fslPrisma01_acq-MTon_MTS.json new file mode 100644 index 00000000..9745bf03 --- /dev/null +++ b/sub-fslPrisma01/anat/sub-fslPrisma01_acq-MTon_MTS.json @@ -0,0 +1,78 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "ImagingFrequency": 123.258, + 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--- /dev/null +++ b/sub-fslPrisma01/anat/sub-fslPrisma01_acq-MTon_MTS.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1543184--d14687063b32c64b351c70aaa3118ad58f47270e17509799a5c13d878d461622.nii.gz diff --git a/sub-fslPrisma01/anat/sub-fslPrisma01_acq-T1w_MTS.json b/sub-fslPrisma01/anat/sub-fslPrisma01_acq-T1w_MTS.json new file mode 100644 index 00000000..093fb405 --- /dev/null +++ b/sub-fslPrisma01/anat/sub-fslPrisma01_acq-T1w_MTS.json @@ -0,0 +1,77 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "ImagingFrequency": 123.258, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Prisma", + "InstitutionName": "Fondazione_Santa_Lucia", + "InstitutionalDepartmentName": "Neuroimmagini", + "InstitutionAddress": "_Via_Ardeatina_306_Roma_RM_IT_00179", + "DeviceSerialNumber": "166157", + "StationName": "AWP166157", + "BodyPartExamined": "CSPINE", + "PatientPosition": "HFS", + "ProcedureStepDescription": "GIOVE", + "SoftwareVersions": "syngo_MR_E11", + "MRAcquisitionType": "3D", + 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b/sub-fslPrisma02/anat/sub-fslPrisma02_T2w.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8218892--b0719d83e1c8c6329773aadfa297e182537b707213662d6a498f3abd7933f8dd.nii.gz diff --git a/sub-fslPrisma02/anat/sub-fslPrisma02_acq-MToff_MTS.json b/sub-fslPrisma02/anat/sub-fslPrisma02_acq-MToff_MTS.json new file mode 100644 index 00000000..f4a799ed --- /dev/null +++ b/sub-fslPrisma02/anat/sub-fslPrisma02_acq-MToff_MTS.json @@ -0,0 +1,77 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "ImagingFrequency": 123.258, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Prisma", + "InstitutionName": "Fondazione_Santa_Lucia", + "InstitutionalDepartmentName": "Neuroimmagini", + "InstitutionAddress": "_Via_Ardeatina_306_Roma_RM_IT_00179", + "DeviceSerialNumber": "166157", + "StationName": "AWP166157", + "BodyPartExamined": "BRAIN", + "PatientPosition": "HFS", + "ProcedureStepDescription": "RM_encefalo_(senza_contrasto)", + "SoftwareVersions": "syngo_MR_E11", + "MRAcquisitionType": "3D", 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index 00000000..4f6ebdb4 --- /dev/null +++ b/sub-fslPrisma04/anat/sub-fslPrisma04_acq-MToff_MTS.json @@ -0,0 +1,77 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "ImagingFrequency": 123.259, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Prisma", + "InstitutionName": "Fondazione_Santa_Lucia", + "InstitutionalDepartmentName": "Neuroimmagini", + "InstitutionAddress": "_Via_Ardeatina_306_Roma_RM_IT_00179", + "DeviceSerialNumber": "166157", + "StationName": "AWP166157", + "BodyPartExamined": "BRAIN", + "PatientPosition": "HFS", + "ProcedureStepDescription": "RM_encefalo_(senza_contrasto)", + "SoftwareVersions": "syngo_MR_E11", + "MRAcquisitionType": "3D", + "SeriesDescription": "GRE-MT0", + "ProtocolName": "GRE-MT0", + "ScanningSequence": "GR", + "SequenceVariant": "SP", + "SequenceName": "_fl3d1", + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "NORM", + "DIS2D" + ], + "SeriesNumber": 24, + "AcquisitionTime": "19:21:32.952500", + "AcquisitionNumber": 1, + 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b/sub-fslPrisma06/anat/sub-fslPrisma06_T2w.nii.gz new file mode 100644 index 00000000..d88d036c --- /dev/null +++ b/sub-fslPrisma06/anat/sub-fslPrisma06_T2w.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8480637--704ac027cab1342681baa0b1cab05116a2eab8f27fb691d5dc263628a270fe5e.nii.gz diff --git a/sub-fslPrisma06/anat/sub-fslPrisma06_acq-MToff_MTS.json b/sub-fslPrisma06/anat/sub-fslPrisma06_acq-MToff_MTS.json new file mode 100644 index 00000000..4e6ca4d2 --- /dev/null +++ b/sub-fslPrisma06/anat/sub-fslPrisma06_acq-MToff_MTS.json @@ -0,0 +1,77 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "ImagingFrequency": 123.258, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Prisma", + "InstitutionName": "Fondazione_Santa_Lucia", + "InstitutionalDepartmentName": "Neuroimmagini", + "InstitutionAddress": "_Via_Ardeatina_306_Roma_RM_IT_00179", + "DeviceSerialNumber": "166157", + "StationName": "AWP166157", + "BodyPartExamined": "CSPINE", + "PatientPosition": "HFS", + 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b/sub-fslPrisma06/anat/sub-fslPrisma06_acq-MTon_MTS.json new file mode 100644 index 00000000..6ea73d13 --- /dev/null +++ b/sub-fslPrisma06/anat/sub-fslPrisma06_acq-MTon_MTS.json @@ -0,0 +1,78 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "ImagingFrequency": 123.258, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Prisma", + "InstitutionName": "Fondazione_Santa_Lucia", + "InstitutionalDepartmentName": "Neuroimmagini", + "InstitutionAddress": "_Via_Ardeatina_306_Roma_RM_IT_00179", + "DeviceSerialNumber": "166157", + "StationName": "AWP166157", + "BodyPartExamined": "CSPINE", + "PatientPosition": "HFS", + "ProcedureStepDescription": "RM_encefalo_(senza_contrasto)", + "SoftwareVersions": "syngo_MR_E11", + "MRAcquisitionType": "3D", + "SeriesDescription": "GRE-MT1", + "ProtocolName": "GRE-MT1", + "ScanningSequence": "GR", + "SequenceVariant": "MTC_SP", + "ScanOptions": "MT", + "SequenceName": "_fl3d1", + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "NORM", + 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