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* The 0.3 series of `vplot` introduces a breaking change for matrix formatting. Matrices are now returned such that large fragments are at the top. This can be reverted using the `-i` flag to invert the matrix to have small fragments at the top instead (pre-0.3 behavior). * `-o` flag for writing to a file path. * the `--multi` flag writes matrices for each region in the input bed file. An optional prefix or ouput directory can be added using the `-o` flag.
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