Update documentation

03_model_habitat_linear.html

@@ -50,7 +50,7 @@
 <li class="toctree-l1 current"><a class="current reference internal" href="#">Linear spawning/rearing habitat model</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="#gradient">Gradient</a></li>
 <li class="toctree-l2"><a class="reference internal" href="#discharge-channel-width">Discharge / channel width</a></li>
-<li class="toctree-l2"><a class="reference internal" href="#feature-type-and-connectivity">Feature type and connectivity</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#feature-type-and-network-connectivity">Feature type and network connectivity</a></li>
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="04_model_habitat_lateral.html">Lateral habitat model (DRAFT)</a></li>
@@ -89,8 +89,8 @@
 <ul class="simple">
 <li><p>stream gradient</p></li>
 <li><p>channel width or discharge (depending on modelling requirments and/or data availability)</p></li>
-<li><p>connectivity (rearing streams must be connected to spawning streams)</p></li>
-<li><p>feature type (spawning or rearing occurs in stream / wetland / lake etc)</p></li>
+<li><p>network connectivity (rearing stream segments must have a specific type of connectivity to spawning stream segments)</p></li>
+<li><p>feature type (whether spawning/rearing occurs in stream / wetland / lake etc)</p></li>
 </ul>
 <p>Per species threshold values for stream gradient and discharge/channel width are noted (and can be adjusted) in the file <a class="reference external" href="https://github.com/smnorris/bcfishpass/blob/main/parameters/example_testing/parameters_habitat_thresholds.csv">parameters_habitat_thresholds.csv</a>.</p>
 <p>Sources for these values for Pacific salmon and steelhead are documented in Table 1 of <a class="reference external" href="https://cwf-fcf.org/en/resources/research-papers/BC_report_formatted_final.pdf">Rebelatto et al (2024)</a>. Gradient and discharge thresholds are derived from the literature and from analysis of known spawning stream characteristics. Channel width thresholds are designed to eliminate very small streams from consideration. Note that the models will tend to retain many streams that may be of marginal habitat; outputs should be used to assist prioritization for further assessment and fish passage work - not as a definitive habitat classification.</p>
@@ -127,8 +127,8 @@ <h2>Discharge / channel width<a class="headerlink" href="#discharge-channel-widt
 </li>
 </ol>
 </section>
-<section id="feature-type-and-connectivity">
-<h2>Feature type and connectivity<a class="headerlink" href="#feature-type-and-connectivity" title="Link to this heading"></a></h2>
+<section id="feature-type-and-network-connectivity">
+<h2>Feature type and network connectivity<a class="headerlink" href="#feature-type-and-network-connectivity" title="Link to this heading"></a></h2>
 <p>Before a segment can be modelled as spawning or rearing, segments with suitable gradient and discharge/channel width are further filtered by feature type and network connectivity. These criteria vary by species and life stage:</p>
 <table class="docutils align-default">
 <thead>

_sources/03_model_habitat_linear.md.txt

@@ -7,8 +7,8 @@ Linear spawning/rearing habitat modelling is currently based on species specific
 
 - stream gradient
 - channel width or discharge (depending on modelling requirments and/or data availability)
-- connectivity (rearing streams must be connected to spawning streams)
-- feature type (spawning or rearing occurs in stream / wetland / lake etc)
+- network connectivity (rearing stream segments must have a specific type of connectivity to spawning stream segments)
+- feature type (whether spawning/rearing occurs in stream / wetland / lake etc)
 
 Per species threshold values for stream gradient and discharge/channel width are noted (and can be adjusted) in the file [parameters_habitat_thresholds.csv](
 https://github.com/smnorris/bcfishpass/blob/main/parameters/example_testing/parameters_habitat_thresholds.csv).
@@ -52,7 +52,7 @@ Channel width is modelled for all of BC:
 
 
 
-## Feature type and connectivity
+## Feature type and network connectivity
 
 Before a segment can be modelled as spawning or rearing, segments with suitable gradient and discharge/channel width are further filtered by feature type and network connectivity. These criteria vary by species and life stage:
 

index.html

@@ -108,7 +108,7 @@ <h1>bcfishpass<a class="headerlink" href="#bcfishpass" title="Link to this headi
 <li class="toctree-l1"><a class="reference internal" href="03_model_habitat_linear.html">Linear spawning/rearing habitat model</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="03_model_habitat_linear.html#gradient">Gradient</a></li>
 <li class="toctree-l2"><a class="reference internal" href="03_model_habitat_linear.html#discharge-channel-width">Discharge / channel width</a></li>
-<li class="toctree-l2"><a class="reference internal" href="03_model_habitat_linear.html#feature-type-and-connectivity">Feature type and connectivity</a></li>
+<li class="toctree-l2"><a class="reference internal" href="03_model_habitat_linear.html#feature-type-and-network-connectivity">Feature type and network connectivity</a></li>
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="04_model_habitat_lateral.html">Lateral habitat model (DRAFT)</a><ul>