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Upon selecting certain proteases in the calibration/GPTMD/search tasks, a popup appears which recommends settings and asks if they should be applied
The classic search is a bit faster and more memory-efficient
Modern search is now considerably faster for open-mass searches
The crosslink search is faster and more accurate
Fixed several bugs in the command-line version of MetaMorpheus for Linux/OSX (file paths were not passed in properly, making the program difficult to run)
Fixed a bug in low-resolution CID/HCD searches that caused high memory usage