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IsoDec incorporation#2442

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nbollis merged 55 commits intosmith-chem-wisc:mastersmith-chem-wisc/MetaMorpheus:masterfrom nbollis:IsoDecIncorporationnbollis/MetaMorpheus:IsoDecIncorporationCopy head branch name to clipboardFeb 5, 2025

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Commits

Commits on May 21, 2024

• Updated to MzLib 1.0.548 and fixed custom ions in search tasks

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• reverted calibration task change

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Commits on May 30, 2024

• merged in master

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Commits on Jun 10, 2024

• merged in master bbbyy

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Commits on Jun 19, 2024

• Merge branch 'smith-chem-wisc:master' into master

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Commits on Jun 21, 2024

• merged in master

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Commits on Jul 3, 2024

• idkman

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Commits on Jul 16, 2024

• merged in master

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Commits on Jul 24, 2024

• Merge remote-tracking branch 'upstream/master'

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• Spectral Library from Command Line (smith-chem-wisc#2386)

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Commits on Aug 6, 2024

• merged in master

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• Merge branch 'master' of https://github.com/nbollis/MetaMorpheus

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Commits on Aug 7, 2024

• Merge branch 'master' of https://github.com/nbollis/MetaMorpheus

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Commits on Sep 4, 2024

• merged in master

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Commits on Sep 17, 2024

• merged in master

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Commits on Oct 3, 2024

• Merge remote-tracking branch 'upstream/master'

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Commits on Oct 10, 2024

• Merge remote-tracking branch 'upstream/master'

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Commits on Oct 18, 2024

• Merge remote-tracking branch 'upstream/master'

  

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Commits on Oct 21, 2024

• Merge remote-tracking branch 'upstream/master'

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• Merge branch 'master' of https://github.com/nbollis/MetaMorpheus

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Commits on Oct 26, 2024

• Build ClassicDeconv Params View Model

  

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• Built classic deconvolution control and the Deconvolution Host Control

  

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• Refactor deconvolution param management with ViewModel

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• Completed the first phase of the new structure. Parameters can now be set from the GUI with the new code structure

  

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Commits on Oct 27, 2024

• Refactor UI and add comprehensive unit tests

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• Expanded test coverage and cleaned up code

  

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• added control to GPTMD window

  

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• Expanded test coverage

  

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Commits on Oct 29, 2024

• Added control to the glyco and xl task windows

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Commits on Oct 31, 2024

• updated mzlib

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• Merge branch 'DeconRefactor' into IsoDecIncorporation

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• Adjusted IsotopicEnvelopeConstructors

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• Built IsoDecParamsViewModel

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• Add IsoDecDeconvolution support and new tests

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• added basic isodec control

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• Merge remote-tracking branch 'upstream/master' into IsoDecIncorporation

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• Add alignment properties and key handling to TextBoxControls

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• Add IsoDec deconvolution support and update mzLib version

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Commits on Nov 1, 2024

• Added in restrictions and help text from Johnny

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• Added ability to read and write decon params from toml

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• Styled the hell outta the controls

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Commits on Nov 21, 2024

• added isodec

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Commits on Dec 4, 2024

• Fixed Protease bug and removed many mono iso from decon options

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Commits on Jan 13, 2025

• Merged in Master

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Commits on Jan 14, 2025

• Refactor ViewModel classes and update unit tests

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• Expanded test coverage

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Commits on Jan 17, 2025

• Added default charge states for isodec

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Commits on Jan 23, 2025

• Merge branch 'master' into IsoDecIncorporation

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Commits on Jan 28, 2025

• Added decon choice to calibration

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• Merge branch 'IsoDecIncorporation' of https://github.com/nbollis/MetaMorpheus into IsoDecIncorporation

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Commits on Jan 30, 2025

• Merge branch 'master' into IsoDecIncorporation

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Commits on Feb 3, 2025

• Merge branch 'master' into IsoDecIncorporation

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• Update CalibrateTaskWindow.xaml.cs

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• Merge branch 'master' into IsoDecIncorporation

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Commits on Feb 4, 2025

• Merge branch 'master' into IsoDecIncorporation

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