diff --git a/MetaMorpheus/EngineLayer/FdrAnalysis/PEPAnalysisEngine.cs b/MetaMorpheus/EngineLayer/FdrAnalysis/PEPAnalysisEngine.cs index 1ecf39a0b..7b12ff9ce 100644 --- a/MetaMorpheus/EngineLayer/FdrAnalysis/PEPAnalysisEngine.cs +++ b/MetaMorpheus/EngineLayer/FdrAnalysis/PEPAnalysisEngine.cs @@ -34,14 +34,13 @@ public Microsoft.ML.Trainers.FastTree.FastTreeBinaryTrainer.Options GetFastTreeO NumberOfThreads = maxThreads, NumberOfTrees = 400, MinimumExampleCountPerLeaf = 10, - MaximumBinCountPerFeature = 255, + NumberOfLeaves = 20, LearningRate = 0.2, - Shrinkage = 0.1, LabelColumnName = "Label", FeatureColumnName = "Features", - UnbalancedSets = true, Seed = 42, - FeatureSelectionSeed = 42 + FeatureSelectionSeed = 42, + UnbalancedSets = false // You might think this should be set to true, but you'd be wrong }; }