diff --git a/MetaMorpheus/CMD/CMD.csproj b/MetaMorpheus/CMD/CMD.csproj
index 927a97c0d..18e7b5b8d 100644
--- a/MetaMorpheus/CMD/CMD.csproj
+++ b/MetaMorpheus/CMD/CMD.csproj
@@ -24,7 +24,7 @@
     <PackageReference Include="Microsoft.ML.CpuMath" Version="3.0.1" />
     <PackageReference Include="Microsoft.ML.FastTree" Version="3.0.1" />
     <PackageReference Include="Microsoft.NETCore.App" Version="2.2.8" />
-    <PackageReference Include="mzLib" Version="1.0.553" />
+    <PackageReference Include="mzLib" Version="1.0.555" />
     <PackageReference Include="Nett" Version="0.15.0" />
   </ItemGroup>
 
diff --git a/MetaMorpheus/EngineLayer/EngineLayer.csproj b/MetaMorpheus/EngineLayer/EngineLayer.csproj
index f937bdc7f..f230f35cd 100644
--- a/MetaMorpheus/EngineLayer/EngineLayer.csproj
+++ b/MetaMorpheus/EngineLayer/EngineLayer.csproj
@@ -21,7 +21,7 @@
     <PackageReference Include="Microsoft.ML.CpuMath" Version="3.0.1" />
     <PackageReference Include="Microsoft.ML.FastTree" Version="3.0.1" />
     <PackageReference Include="Microsoft.NETCore.App" Version="2.2.8" />
-    <PackageReference Include="mzLib" Version="1.0.553" />
+    <PackageReference Include="mzLib" Version="1.0.555" />
     <PackageReference Include="NETStandard.Library" Version="2.0.3" />
     <PackageReference Include="Nett" Version="0.15.0" />
     <PackageReference Include="Newtonsoft.Json" Version="13.0.3" />
diff --git a/MetaMorpheus/GUI/GUI.csproj b/MetaMorpheus/GUI/GUI.csproj
index 0db67590d..5dd1f6635 100644
--- a/MetaMorpheus/GUI/GUI.csproj
+++ b/MetaMorpheus/GUI/GUI.csproj
@@ -55,7 +55,7 @@
     <PackageReference Include="Microsoft.ML.CpuMath" Version="3.0.1" />
     <PackageReference Include="Microsoft.ML.FastTree" Version="3.0.1" />
     <PackageReference Include="Microsoft.NETCore.App" Version="2.2.8" />
-    <PackageReference Include="mzLib" Version="1.0.553" />
+    <PackageReference Include="mzLib" Version="1.0.555" />
     <PackageReference Include="Nett" Version="0.15.0" />
     <PackageReference Include="Newtonsoft.Json" Version="13.0.3" />
     <PackageReference Include="OxyPlot.Core" Version="2.0.0" />
diff --git a/MetaMorpheus/GuiFunctions/GuiFunctions.csproj b/MetaMorpheus/GuiFunctions/GuiFunctions.csproj
index e18966830..f753dbd52 100644
--- a/MetaMorpheus/GuiFunctions/GuiFunctions.csproj
+++ b/MetaMorpheus/GuiFunctions/GuiFunctions.csproj
@@ -16,7 +16,7 @@
   <ItemGroup>
     <PackageReference Include="itext7" Version="8.0.5" />
     <PackageReference Include="itext7.bouncy-castle-adapter" Version="8.0.5" />
-    <PackageReference Include="mzLib" Version="1.0.553" />
+    <PackageReference Include="mzLib" Version="1.0.555" />
     <PackageReference Include="OxyPlot.Wpf" Version="2.0.0" />
     <PackageReference Include="Svg" Version="3.4.7" />
   </ItemGroup>
diff --git a/MetaMorpheus/TaskLayer/TaskLayer.csproj b/MetaMorpheus/TaskLayer/TaskLayer.csproj
index 8a7446de9..48dedc05f 100644
--- a/MetaMorpheus/TaskLayer/TaskLayer.csproj
+++ b/MetaMorpheus/TaskLayer/TaskLayer.csproj
@@ -21,7 +21,7 @@
     <PackageReference Include="Microsoft.ML.CpuMath" Version="3.0.1" />
     <PackageReference Include="Microsoft.ML.FastTree" Version="3.0.1" />
     <PackageReference Include="Microsoft.NETCore.App" Version="2.2.8" />
-    <PackageReference Include="mzLib" Version="1.0.553" />
+    <PackageReference Include="mzLib" Version="1.0.555" />
     <PackageReference Include="NetSerializer" Version="4.1.2" />
     <PackageReference Include="Nett" Version="0.15.0" />
   </ItemGroup>
diff --git a/MetaMorpheus/Test/Test.csproj b/MetaMorpheus/Test/Test.csproj
index 3e111ba38..ff20a959e 100644
--- a/MetaMorpheus/Test/Test.csproj
+++ b/MetaMorpheus/Test/Test.csproj
@@ -24,7 +24,7 @@
     <PackageReference Include="Microsoft.ML" Version="3.0.1" />
     <PackageReference Include="Microsoft.ML.CpuMath" Version="3.0.1" />
     <PackageReference Include="Microsoft.ML.FastTree" Version="3.0.1" />
-    <PackageReference Include="mzLib" Version="1.0.553" />
+    <PackageReference Include="mzLib" Version="1.0.555" />
     <PackageReference Include="NUnit" Version="4.1.0" />
     <PackageReference Include="NUnit3TestAdapter" Version="4.6.0" />
     <PackageReference Include="Microsoft.NET.Test.Sdk" Version="17.10.0" />
@@ -217,9 +217,6 @@
     <None Update="SlicedSearchTaskConfig.toml">
       <CopyToOutputDirectory>Always</CopyToOutputDirectory>
     </None>
-    <None Update="TestData\bosTaurusEnamPruned.xml">
-      <CopyToOutputDirectory>Always</CopyToOutputDirectory>
-    </None>
     <None Update="TestData\customBCZ.toml">
       <CopyToOutputDirectory>Always</CopyToOutputDirectory>
     </None>
@@ -328,9 +325,6 @@
     <None Update="TestData\myPrositLib.msp">
       <CopyToOutputDirectory>Always</CopyToOutputDirectory>
     </None>
-    <None Update="TestData\NonSpecificSearchToml.toml">
-      <CopyToOutputDirectory>Always</CopyToOutputDirectory>
-    </None>
     <None Update="TestData\noSAreaderTest.psmtsv">
       <CopyToOutputDirectory>Always</CopyToOutputDirectory>
     </None>