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pymbar 4 update #155

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pymbar 4 update #155

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cwalker7
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@cwalker7 cwalker7 commented Dec 15, 2022

Description

Updates mbar functionality to work with pymbar version 4.0. A number of changes were made according to this guide:
https://pymbar.readthedocs.io/en/master/moving_from_pymbar3.html

MBAR solvers are now more reliable than version 3 - in all cases, I set the algorithm to 'robust' with maximum iterations of 1E6.

TODOS

  • Some new segfaults popping up with process_replica_exchange tests. Figure out if this is related to changes in the timeseries module

Status

  • Ready to go

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