Plant Growth Promotion Genescan of Mucilage Isolate Genomes

R analysis of data output from hmmscans of Mucilage Isolate whole genome sequences using TIGRFAMs for known marker genes of direct Plant Growth Promotion traits.

R Session Info

R version 3.5.1 (2018-07-02)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS  10.15.3

Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] grid      stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
 [1] viridis_0.5.1         viridisLite_0.3.0     RColorBrewer_1.1-2    randomcoloR_1.1.0     dendextend_1.12.0     circlize_0.4.8
 [7] ape_5.3               forcats_0.4.0         stringr_1.4.0         dplyr_0.8.3           purrr_0.3.3           readr_1.3.1
[13] tidyr_1.0.0           tibble_2.1.3          ggplot2_3.2.1         tidyverse_1.2.1       ComplexHeatmap_1.20.0 ggnewscale_0.4.0
[19] ggtree_1.14.6         treeio_1.6.2

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.2          lubridate_1.7.4     lattice_0.20-38     assertthat_0.2.1    zeallot_0.1.0       V8_2.3              R6_2.4.0
 [8] cellranger_1.1.0    backports_1.1.5     httr_1.4.1          pillar_1.4.2        GlobalOptions_0.1.1 rlang_0.4.0         curl_4.2
[15] lazyeval_0.2.2      readxl_1.3.1        rstudioapi_0.10     GetoptLong_0.1.7    Rtsne_0.15          munsell_0.5.0       broom_0.5.2
[22] compiler_3.5.1      modelr_0.1.5        xfun_0.10           pkgconfig_2.0.3     shape_1.4.4         tidyselect_0.2.5    gridExtra_2.3
[29] crayon_1.3.4        withr_2.1.2         nlme_3.1-141        jsonlite_1.6        gtable_0.3.0        lifecycle_0.1.0     magrittr_1.5
[36] scales_1.0.0        tidytree_0.2.8      cli_1.1.0           stringi_1.4.3       xml2_1.2.2          rvcheck_0.1.5       generics_0.0.2
[43] vctrs_0.2.0         rjson_0.2.20        tools_3.5.1         glue_1.3.1          hms_0.5.1           parallel_3.5.1      yaml_2.2.0
[50] colorspace_1.4-1    cluster_2.1.0       BiocManager_1.30.8  rvest_0.3.4         knitr_1.25          haven_2.1.1