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DEV: testing - slurm executor time

beardymcjohnfacepushed 1 commit to dev • d4dc21f…f678802 • 
yesterday

DEV: testing - slurm executor time

beardymcjohnfacepushed 1 commit to dev • afba53d…d4dc21f • 
yesterday

DEV: testing - slurm executor cpus

beardymcjohnfacepushed 1 commit to dev • 11c7c0b…afba53d • 
yesterday

DEV: testing - slurm executor cpus

beardymcjohnfacepushed 1 commit to dev • 5d778cb…11c7c0b • 
yesterday

DEV: testing - trimnami and koverage remove workflow profiles

beardymcjohnfacepushed 1 commit to dev • 3136eea…5d778cb • 
yesterday

DEV: testing - trimnami and koverage local jobs only

beardymcjohnfacepushed 1 commit to dev • 2f23e7a…3136eea • 
yesterday

DEV: testing using local containers

beardymcjohnfacepushed 1 commit to dev • 41b8257…2f23e7a • 
2 days ago

DEV: add singularity support

beardymcjohnfacepushed 2 commits to dev • 8eb8493…41b8257 • 
on Jan 16

Update README.md

beardymcjohnfacepushed 1 commit to main • 3cf350d…06ef767 • 
on Jan 15

BUG: longread fix

beardymcjohnfacepushed 1 commit to dev • e96ca0b…8eb8493 • 
on Dec 17, 2024

BUG: longread fix

beardymcjohnfacepushed 4 commits to dev • f823652…e96ca0b • 
on Dec 17, 2024

Merge pull request #119 from shandley/dev

Pull request merge
beardymcjohnfacepushed 6 commits to main • 434492c…3cf350d • 
on Dec 16, 2024

BUG: strict priority build fix

beardymcjohnfacepushed 1 commit to dev • 3d51643…f823652 • 
on Dec 16, 2024

MAINT: longread option

beardymcjohnfacepushed 9 commits to dev • 98cbb6e…3d51643 • 
on Dec 16, 2024

Merge pull request #109 from shandley/dev

Pull request merge
beardymcjohnfacepushed 6 commits to main • 04314cb…434492c • 
on Dec 5, 2024

BUG: pass conda-prefix to subsnake env build rule

beardymcjohnfacepushed 1 commit to dev • 6cf4292…98cbb6e • 
on Mar 26, 2024

BUG: pass conda-prefix to Trimnami and Koverage; should address #106

beardymcjohnfacepushed 1 commit to dev • edaa3b8…6cf4292 • 
on Mar 26, 2024

MAIN: simulate all trimmers in build tests

beardymcjohnfacepushed 2 commits to dev • ba161c8…edaa3b8 • 
on Mar 25, 2024

Update README.md

beardymcjohnfacepushed 1 commit to main • 19c1193…04314cb • 
on Mar 5, 2024

BUG: fix for longreads

beardymcjohnfacepushed 1 commit to dev • 17a846f…ba161c8 • 
on Feb 26, 2024

Merge pull request #105 from shandley/dev

Pull request merge
beardymcjohnfacepushed 18 commits to main • a2bf52a…19c1193 • 
on Feb 9, 2024

BUG: fix for bad contigAnnot file

beardymcjohnfacepushed 1 commit to dev • e379d47…17a846f • 
on Feb 8, 2024

BUG: fix for group jobs with different conda envs

beardymcjohnfacepushed 1 commit to dev • 16a2cc6…e379d47 • 
on Feb 8, 2024

MAINT: update dependencies

beardymcjohnfacepushed 1 commit to dev • ee46bf0…16a2cc6 • 
on Feb 8, 2024

DEV: use workflow profile instead of snakemake default; WIP but will …

beardymcjohnfacepushed 2 commits to dev • 072a527…ee46bf0 • 
on Feb 7, 2024

BUG: fix string formatting

beardymcjohnfacepushed 1 commit to dev • 9720090…072a527 • 
on Feb 7, 2024

BUG: fix string formatting

beardymcjohnfacepushed 1 commit to dev • 688be7e…9720090 • 
on Feb 7, 2024

BUG: fix unit test

beardymcjohnfacepushed 1 commit to dev • c28de23…688be7e • 
on Feb 7, 2024

BUG: fix and misc refactor

beardymcjohnfacepushed 1 commit to dev • 037e693…c28de23 • 
on Feb 7, 2024

BUG: testing fixes for broken config reformat string

beardymcjohnfacepushed 1 commit to dev • f0d586d…037e693 • 
on Feb 7, 2024