diff --git a/.cz.toml b/.cz.toml deleted file mode 100644 index 5de657e..0000000 --- a/.cz.toml +++ /dev/null @@ -1,7 +0,0 @@ -[tool.commitizen] -bump_message = "build(version): :bookmark: update version from $current_version to $new_version [skip ci]" -update_changelog_on_bump = true -version_provider = "poetry" -version_files = [ - "pyproject.toml" -] diff --git a/.github/_project-dependabot.yml b/.github/_project-dependabot.yml deleted file mode 100644 index 6ed6e57..0000000 --- a/.github/_project-dependabot.yml +++ /dev/null @@ -1,12 +0,0 @@ -version: 2 -updates: - - package-ecosystem: pip - directory: / - schedule: - interval: monthly - versioning-strategy: increase-if-necessary - commit-message: - prefix: build - include: scope - assignees: - - "lwjohnst86" diff --git a/.github/dependabot.yml b/.github/dependabot.yml deleted file mode 100644 index 1310301..0000000 --- a/.github/dependabot.yml +++ /dev/null @@ -1,11 +0,0 @@ -version: 2 -updates: - - package-ecosystem: github-actions - directory: / - schedule: - interval: monthly - commit-message: - prefix: ci - include: scope - assignees: - - "lwjohnst86" diff --git a/.github/pull_request_template.md b/.github/pull_request_template.md index aae8dd8..cca7022 100644 --- a/.github/pull_request_template.md +++ b/.github/pull_request_template.md @@ -1,6 +1,6 @@ -## Description +# Description -This PR DESCRIBE CHANGES. +This PR will [DESCRIBE CHANGES]. Closes # @@ -9,6 +9,6 @@ This PR needs a quick/an in-depth review. ## Checklist -- [ ] Added or updated tests -- [ ] Updated documentation -- [ ] Ran `just run-all` +- [ ] Read through for typos, added new words to the dictionary +- [ ] Checked that the README is up to date +- [ ] Resolved any Ruff errors / formatted in Markdown diff --git a/.github/workflows/build-package.yml b/.github/workflows/build-package.yml deleted file mode 100644 index 3777628..0000000 --- a/.github/workflows/build-package.yml +++ /dev/null @@ -1,32 +0,0 @@ -name: Build package - -on: - pull_request: - branches: - - main - paths-ignore: - # Config files - - ".github/**" - - ".vscode/**" - - ".gitignore" - # Documentation - - "docs/**" - - "*.md" - - "*.qmd" - - "justfile" - # Website files - - _quarto.yml - - index.qmd - - _publish.yml - - _extensions/** - push: - branches: - - main - -jobs: - lint: - uses: seedcase-project/.github/.github/workflows/reusable-lint-python.yml@main - - test: - uses: seedcase-project/.github/.github/workflows/reusable-test-python.yml@main - needs: lint diff --git a/.github/workflows/build-website.yml b/.github/workflows/build-website.yml deleted file mode 100644 index f6f4e9c..0000000 --- a/.github/workflows/build-website.yml +++ /dev/null @@ -1,18 +0,0 @@ -name: Build website of documentation - -on: - push: - branches: - - main - paths: - - docs/** - - _quarto.yml - - index.qmd - - _publish.yml - - _extensions/** - -jobs: - build-website: - uses: seedcase-project/.github/.github/workflows/reusable-build-docs-with-python.yml@main - secrets: - netlify-token: ${{ secrets.NETLIFY_AUTH_TOKEN }} diff --git a/.github/workflows/sync-files.yml b/.github/workflows/sync-files.yml deleted file mode 100644 index 10c1d20..0000000 --- a/.github/workflows/sync-files.yml +++ /dev/null @@ -1,25 +0,0 @@ -name: Sync files across repos -on: - push: - branches: - - main - workflow_dispatch: - -jobs: - sync: - runs-on: ubuntu-latest - steps: - - name: Checkout Repository - uses: actions/checkout@main - - - name: Run GitHub File Sync - uses: BetaHuhn/repo-file-sync-action@v1 - with: - GH_PAT: ${{ secrets.SYNC_PAT }} - ASSIGNEES: lwjohnst86 - IS_FINE_GRAINED: true - GIT_USERNAME: lwjohnst86 - GIT_EMAIL: lwjohnst@gmail.com - COMMIT_PREFIX: "chore(sync): :hammer: " - BRANCH_PREFIX: chore - TEAM_REVIEWERS: admin diff --git a/.github/workflows/update-version.yml b/.github/workflows/update-version.yml deleted file mode 100644 index 2125e27..0000000 --- a/.github/workflows/update-version.yml +++ /dev/null @@ -1,12 +0,0 @@ -name: Update version - -on: - push: - branches: - - main - -jobs: - update-version: - uses: seedcase-project/.github/.github/workflows/reusable-update-python-project-version.yml@main - secrets: - update-version-gh-token: ${{ secrets.UPDATE_VERSION_TOKEN }} diff --git a/.vscode/settings.json b/.vscode/settings.json index 491bd60..62d8da5 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -36,6 +36,4 @@ "quarto": true }, "cSpell.language": "en,en-GB", - "python.testing.pytestEnabled": true, - "python.testing.pytestPath": "${workspaceFolder}/.venv/bin/pytest", } diff --git a/README.md b/README.md index 448872f..fd109e6 100644 --- a/README.md +++ b/README.md @@ -1,10 +1,10 @@ # Template for Seedcase Python packages -This repository contains a template for setting up new Python package projects in Seedcase. The first step is to create a new repository using this template. This can easily be done by clicking the "Use this template" button on the repository page or by using the GitHub CLI: +This repository contains a template for setting up new data example repos in Seedcase. The first step is to create a new repository using this template. This can easily be done by clicking the "Use this template" button on the repository page or by using the GitHub CLI: ``` bash # NAME is the name to give the new repository -gh repo create NAME --template seedcase-project/template-python-project +gh repo create NAME --template seedcase-project/template-example-repo ``` ## Setting things up after cloning diff --git a/_extensions/seedcase-project/seedcase-theme/_extension.yml b/_extensions/seedcase-project/seedcase-theme/_extension.yml deleted file mode 100644 index a8cfb04..0000000 --- a/_extensions/seedcase-project/seedcase-theme/_extension.yml +++ /dev/null @@ -1,47 +0,0 @@ -title: seedcase-theme -author: Luke W. Johnston -version: 1.0.0 -quarto-required: ">=1.2.0" -contributes: - formats: - html: - from: markdown+emoji - theme: - - cosmo - - theme.scss - toc: true - toc-location: right - toc-depth: 3 - - project: - project: - type: website - execute-dir: project - - website: - page-navigation: true - favicon: favicon/favicon.ico - repo-branch: main - repo-actions: [edit, issue, source] - search: - location: navbar - type: overlay - navbar: - background: light - logo: logos/navbar-logo-seedcase-project.svg - logo-alt: "Seedcase Project logo: Main page" - page-footer: - border: true - center: - - text: "License: CC-BY 4.0" - href: https://seedcase-project.org/license - - text: "Code of Conduct" - href: "https://github.com/seedcase-project/.github/blob/main/CODE_OF_CONDUCT.md" - - text: "Contributing" - href: "https://community.seedcase-project.org/guides/" - - text: "Funded by the Novo Nordisk Foundation" - href: https://seedcase-project.org/#acknowledgements - - csl: vancouver.csl - - format: seedcase-theme-html diff --git a/_extensions/seedcase-project/seedcase-theme/favicon/android-chrome-192x192.png b/_extensions/seedcase-project/seedcase-theme/favicon/android-chrome-192x192.png deleted file mode 100644 index 5ae7983..0000000 Binary files a/_extensions/seedcase-project/seedcase-theme/favicon/android-chrome-192x192.png and /dev/null differ diff --git a/_extensions/seedcase-project/seedcase-theme/favicon/android-chrome-512x512.png b/_extensions/seedcase-project/seedcase-theme/favicon/android-chrome-512x512.png deleted file mode 100644 index 9340bcc..0000000 Binary files a/_extensions/seedcase-project/seedcase-theme/favicon/android-chrome-512x512.png and /dev/null differ diff --git a/_extensions/seedcase-project/seedcase-theme/favicon/apple-touch-icon.png b/_extensions/seedcase-project/seedcase-theme/favicon/apple-touch-icon.png deleted file mode 100644 index a5ffd2a..0000000 Binary files a/_extensions/seedcase-project/seedcase-theme/favicon/apple-touch-icon.png and /dev/null differ diff --git a/_extensions/seedcase-project/seedcase-theme/favicon/favicon-16x16.png b/_extensions/seedcase-project/seedcase-theme/favicon/favicon-16x16.png deleted file mode 100644 index 7090200..0000000 Binary files a/_extensions/seedcase-project/seedcase-theme/favicon/favicon-16x16.png and /dev/null differ diff --git a/_extensions/seedcase-project/seedcase-theme/favicon/favicon-32x32.png b/_extensions/seedcase-project/seedcase-theme/favicon/favicon-32x32.png deleted file mode 100644 index 3a75b2c..0000000 Binary files a/_extensions/seedcase-project/seedcase-theme/favicon/favicon-32x32.png and /dev/null differ diff --git a/_extensions/seedcase-project/seedcase-theme/favicon/favicon.ico b/_extensions/seedcase-project/seedcase-theme/favicon/favicon.ico deleted file mode 100644 index bf7fbfa..0000000 Binary files a/_extensions/seedcase-project/seedcase-theme/favicon/favicon.ico and /dev/null differ diff --git a/_extensions/seedcase-project/seedcase-theme/favicon/site.webmanifest b/_extensions/seedcase-project/seedcase-theme/favicon/site.webmanifest deleted file mode 100644 index 1dd9112..0000000 --- a/_extensions/seedcase-project/seedcase-theme/favicon/site.webmanifest +++ /dev/null @@ -1 +0,0 @@ -{"name":"","short_name":"","icons":[{"src":"/android-chrome-192x192.png","sizes":"192x192","type":"image/png"},{"src":"/android-chrome-512x512.png","sizes":"512x512","type":"image/png"}],"theme_color":"#ffffff","background_color":"#ffffff","display":"standalone"} diff --git a/_extensions/seedcase-project/seedcase-theme/logos/au-logo.png b/_extensions/seedcase-project/seedcase-theme/logos/au-logo.png deleted file mode 100644 index 4c6625e..0000000 Binary files a/_extensions/seedcase-project/seedcase-theme/logos/au-logo.png and /dev/null differ diff --git a/_extensions/seedcase-project/seedcase-theme/logos/flower-logo.svg b/_extensions/seedcase-project/seedcase-theme/logos/flower-logo.svg deleted file mode 100644 index 94be68d..0000000 --- a/_extensions/seedcase-project/seedcase-theme/logos/flower-logo.svg +++ /dev/null @@ -1,6 +0,0 @@ - - - - - - diff --git a/_extensions/seedcase-project/seedcase-theme/logos/garden-logo.svg b/_extensions/seedcase-project/seedcase-theme/logos/garden-logo.svg deleted file mode 100644 index 6632d17..0000000 --- a/_extensions/seedcase-project/seedcase-theme/logos/garden-logo.svg +++ /dev/null @@ -1,12 +0,0 @@ - - - - - - - - - - - - diff --git a/_extensions/seedcase-project/seedcase-theme/logos/mjoelner-logo.svg b/_extensions/seedcase-project/seedcase-theme/logos/mjoelner-logo.svg deleted file mode 100644 index 994d034..0000000 --- a/_extensions/seedcase-project/seedcase-theme/logos/mjoelner-logo.svg +++ /dev/null @@ -1,10 +0,0 @@ - - - - - - - - diff --git a/_extensions/seedcase-project/seedcase-theme/logos/navbar-logo-seedcase-community.svg b/_extensions/seedcase-project/seedcase-theme/logos/navbar-logo-seedcase-community.svg deleted file mode 100644 index 5ecfdac..0000000 --- a/_extensions/seedcase-project/seedcase-theme/logos/navbar-logo-seedcase-community.svg +++ /dev/null @@ -1,18 +0,0 @@ - - - - - - - - - - - - - - - - - - diff --git a/_extensions/seedcase-project/seedcase-theme/logos/navbar-logo-seedcase-decisions.svg b/_extensions/seedcase-project/seedcase-theme/logos/navbar-logo-seedcase-decisions.svg deleted file mode 100644 index 563fc6f..0000000 --- a/_extensions/seedcase-project/seedcase-theme/logos/navbar-logo-seedcase-decisions.svg +++ /dev/null @@ -1,17 +0,0 @@ - - - - - - - - - - - - - - - - - diff --git a/_extensions/seedcase-project/seedcase-theme/logos/navbar-logo-seedcase-design.svg b/_extensions/seedcase-project/seedcase-theme/logos/navbar-logo-seedcase-design.svg deleted file mode 100644 index fd2456a..0000000 --- a/_extensions/seedcase-project/seedcase-theme/logos/navbar-logo-seedcase-design.svg +++ /dev/null @@ -1,14 +0,0 @@ - - - - - - - - - - - - - - diff --git a/_extensions/seedcase-project/seedcase-theme/logos/navbar-logo-seedcase-flower.svg b/_extensions/seedcase-project/seedcase-theme/logos/navbar-logo-seedcase-flower.svg deleted file mode 100644 index 2edb75b..0000000 --- a/_extensions/seedcase-project/seedcase-theme/logos/navbar-logo-seedcase-flower.svg +++ /dev/null @@ -1,17 +0,0 @@ - - - - - - - - - - - - - - - - - diff --git a/_extensions/seedcase-project/seedcase-theme/logos/navbar-logo-seedcase-garden.svg b/_extensions/seedcase-project/seedcase-theme/logos/navbar-logo-seedcase-garden.svg deleted file mode 100644 index dbbbd60..0000000 --- a/_extensions/seedcase-project/seedcase-theme/logos/navbar-logo-seedcase-garden.svg +++ /dev/null @@ -1,20 +0,0 @@ - - - - - - - - - - - - - - - - - - - - diff --git a/_extensions/seedcase-project/seedcase-theme/logos/navbar-logo-seedcase-learn.svg b/_extensions/seedcase-project/seedcase-theme/logos/navbar-logo-seedcase-learn.svg deleted file mode 100644 index 3f0023d..0000000 --- a/_extensions/seedcase-project/seedcase-theme/logos/navbar-logo-seedcase-learn.svg +++ /dev/null @@ -1,13 +0,0 @@ - - - - - - - - - - - - - diff --git a/_extensions/seedcase-project/seedcase-theme/logos/navbar-logo-seedcase-project.svg b/_extensions/seedcase-project/seedcase-theme/logos/navbar-logo-seedcase-project.svg deleted file mode 100644 index d3b407c..0000000 --- a/_extensions/seedcase-project/seedcase-theme/logos/navbar-logo-seedcase-project.svg +++ /dev/null @@ -1,8 +0,0 @@ - - - - - - - - diff --git a/_extensions/seedcase-project/seedcase-theme/logos/navbar-logo-seedcase-propagate.svg b/_extensions/seedcase-project/seedcase-theme/logos/navbar-logo-seedcase-propagate.svg deleted file mode 100644 index eab9dc5..0000000 --- a/_extensions/seedcase-project/seedcase-theme/logos/navbar-logo-seedcase-propagate.svg +++ /dev/null @@ -1,21 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - diff --git a/_extensions/seedcase-project/seedcase-theme/logos/navbar-logo-seedcase-sprout.svg b/_extensions/seedcase-project/seedcase-theme/logos/navbar-logo-seedcase-sprout.svg deleted file mode 100644 index 610198c..0000000 --- a/_extensions/seedcase-project/seedcase-theme/logos/navbar-logo-seedcase-sprout.svg +++ /dev/null @@ -1,17 +0,0 @@ - - - - - - - - - - - - - - - - - diff --git a/_extensions/seedcase-project/seedcase-theme/logos/navbar-logo-seedcase-team.svg b/_extensions/seedcase-project/seedcase-theme/logos/navbar-logo-seedcase-team.svg deleted file mode 100644 index b0c234c..0000000 --- a/_extensions/seedcase-project/seedcase-theme/logos/navbar-logo-seedcase-team.svg +++ /dev/null @@ -1,10 +0,0 @@ - - - - - - - - - - diff --git a/_extensions/seedcase-project/seedcase-theme/logos/nnf-logo.png b/_extensions/seedcase-project/seedcase-theme/logos/nnf-logo.png deleted file mode 100644 index 5ef703e..0000000 Binary files a/_extensions/seedcase-project/seedcase-theme/logos/nnf-logo.png and /dev/null differ diff --git a/_extensions/seedcase-project/seedcase-theme/logos/propagate-logo.svg b/_extensions/seedcase-project/seedcase-theme/logos/propagate-logo.svg deleted file mode 100644 index b30bf88..0000000 --- a/_extensions/seedcase-project/seedcase-theme/logos/propagate-logo.svg +++ /dev/null @@ -1,6 +0,0 @@ - - - - - - diff --git a/_extensions/seedcase-project/seedcase-theme/logos/rm-logo.svg b/_extensions/seedcase-project/seedcase-theme/logos/rm-logo.svg deleted file mode 100644 index b97372c..0000000 --- a/_extensions/seedcase-project/seedcase-theme/logos/rm-logo.svg +++ /dev/null @@ -1,25 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/_extensions/seedcase-project/seedcase-theme/logos/sdca-logo.png b/_extensions/seedcase-project/seedcase-theme/logos/sdca-logo.png deleted file mode 100644 index adb5bae..0000000 Binary files a/_extensions/seedcase-project/seedcase-theme/logos/sdca-logo.png and /dev/null differ diff --git a/_extensions/seedcase-project/seedcase-theme/logos/seedcase-logo.svg b/_extensions/seedcase-project/seedcase-theme/logos/seedcase-logo.svg deleted file mode 100644 index fa02c65..0000000 --- a/_extensions/seedcase-project/seedcase-theme/logos/seedcase-logo.svg +++ /dev/null @@ -1,6 +0,0 @@ - - - - - - diff --git a/_extensions/seedcase-project/seedcase-theme/logos/software-product-logos.svg b/_extensions/seedcase-project/seedcase-theme/logos/software-product-logos.svg deleted file mode 100644 index 9bae326..0000000 --- a/_extensions/seedcase-project/seedcase-theme/logos/software-product-logos.svg +++ /dev/null @@ -1,28 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/_extensions/seedcase-project/seedcase-theme/logos/sprout-logo.svg b/_extensions/seedcase-project/seedcase-theme/logos/sprout-logo.svg deleted file mode 100644 index fe5edf2..0000000 --- a/_extensions/seedcase-project/seedcase-theme/logos/sprout-logo.svg +++ /dev/null @@ -1,6 +0,0 @@ - - - - - - diff --git a/_extensions/seedcase-project/seedcase-theme/theme.scss b/_extensions/seedcase-project/seedcase-theme/theme.scss deleted file mode 100644 index 5cd36f6..0000000 --- a/_extensions/seedcase-project/seedcase-theme/theme.scss +++ /dev/null @@ -1,88 +0,0 @@ -/*-- scss:defaults --*/ - -@import url('https://fonts.googleapis.com/css2?family=Noto Sans'); -@import url('https://fonts.googleapis.com/css2?family=Fira+Code'); -@import url('https://fonts.googleapis.com/css2?family=Maven+Pro'); - -$font-family-sans-serif: "Maven Pro", sans-serif; -$font-family-monospace: "Fira Code", monospace; -$headings-font-family: "Noto Sans", sans-serif; - -/* brand colour #003224 - the one below is a slightly lighter version of the brand colour */ -/* using rgb to be able to use rgba, i.e., opacity */ -$primary: rgb(25, 100, 64); // #196440 -$secondary: rgb(198, 240, 211); // #c6f0d3 -$tertiary: rgb(72, 220, 118); // #48dc76 -$toc-active-border: rgb(139, 139, 139); // #8b8b8b; - -$navbar-padding-y: .2rem; - -/*-- scss:rules --*/ -.navbar { - border-bottom: rgba($toc-active-border, 0.3) 1px solid; -} - -svg { - display: block; - max-width: 100%; - margin: 0 auto; - height: auto !important; - width: auto !important; -} - -li { - margin: 5px 0; -} - -figcaption { - text-align: center; -} - -.about-link { - background-color: $secondary !important; - border: 1px solid $tertiary !important; - border-radius: 50px !important; - color: $primary !important; -} - -.about-link:hover { - background-color: rgba($secondary, 0.3) !important; -} - -.about-links { - justify-content: left !important; - padding: 10px 0px 0px 0px !important; -} - -/* TODO: take inspiration from Quarto-web to make this cleaner */ -.landing-page-banner { - background-color: rgba($secondary, 0.3); - padding: 10px; - position: relative; - left: 50%; - right: 50%; - width: 100vw; - margin-left: -50vw; - margin-right: -50vw; -} - -.landing-page-banner-content { - max-width: 800px; - margin: 0 auto; - box-sizing: border-box; - margin-bottom: 40px; -} - -.landing-page-card { - border-radius: 12px; - box-shadow: 0px 2px 4px rgba(0, 0, 0, 0.15); - background-color: rgba($secondary, 0.3); - border: none; - padding: 5px 20px 10px 20px; - margin-bottom: 40px; - justify-content: start !important; -} - -.navbar-logo { - max-height: 38px; -} diff --git a/_extensions/seedcase-project/seedcase-theme/vancouver.csl b/_extensions/seedcase-project/seedcase-theme/vancouver.csl deleted file mode 100644 index edbb69b..0000000 --- a/_extensions/seedcase-project/seedcase-theme/vancouver.csl +++ /dev/null @@ -1,351 +0,0 @@ - - diff --git a/_publish.yml b/_publish.yml deleted file mode 100644 index 1974aab..0000000 --- a/_publish.yml +++ /dev/null @@ -1,5 +0,0 @@ -- source: project - netlify: - # TODO: Include correct ID - - id: "" - url: "https://NAME-seedcase-project.netlify.app" diff --git a/_quarto.yml b/_quarto.yml deleted file mode 100644 index d543684..0000000 --- a/_quarto.yml +++ /dev/null @@ -1,50 +0,0 @@ -project: - type: seedcase-theme - render: - - "docs/*" - - "index.qmd" - -website: - title: "Seedcase NAME" - site-url: "https://NAME.seedcase-project.org/" - repo-url: "https://github.com/seedcase-project/REPO" - page-navigation: true - navbar: - pinned: true - title: false - logo: "_extensions/seedcase-project/seedcase-theme/logos/navbar-logo-seedcase-NAME.svg" - logo-alt: "Seedcase NAME logo: Main page" - left: - - text: "Guide" - href: docs/guide/index.qmd - - text: "Design" - href: docs/design/index.qmd - tools: - - icon: github - href: "https://github.com/seedcase-project/REPO" - aria-label: "GitHub icon: Source code" - - icon: house - href: https://seedcase-project.org - aria-label: "House icon: Seedcase Project home page" - sidebar: - - id: design - pinned: true - style: "floating" - contents: - - text: "Design" - href: docs/design/index.qmd - - id: guide - contents: - - section: "Guide" - href: docs/guide/index.qmd - -# format: -# seedcase-theme-html: - # include-before-body: - # - "includes/site-counter.html" - # - "includes/contribute.html" - -editor: - markdown: - wrap: 72 - canonical: true diff --git a/data-raw/.gitignore b/data-raw/.gitignore new file mode 100644 index 0000000..2c2d5e0 --- /dev/null +++ b/data-raw/.gitignore @@ -0,0 +1,3 @@ +* +!.gitignore +!downloaded/ diff --git a/data-raw/downloaded/.gitignore b/data-raw/downloaded/.gitignore new file mode 100644 index 0000000..d6b7ef3 --- /dev/null +++ b/data-raw/downloaded/.gitignore @@ -0,0 +1,2 @@ +* +!.gitignore diff --git a/docs/LICENSE.md b/docs/LICENSE.md deleted file mode 100644 index 2824c92..0000000 --- a/docs/LICENSE.md +++ /dev/null @@ -1,394 +0,0 @@ -Attribution 4.0 International - 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For -the avoidance of doubt, this paragraph does not form part of the -public licenses. - -Creative Commons may be contacted at creativecommons.org. diff --git a/docs/design/index.qmd b/docs/design/index.qmd deleted file mode 100644 index e69de29..0000000 diff --git a/docs/guide/index.qmd b/docs/guide/index.qmd deleted file mode 100644 index e69de29..0000000 diff --git a/docs/includes/_wip.qmd b/docs/includes/_wip.qmd deleted file mode 100644 index 0e40629..0000000 --- a/docs/includes/_wip.qmd +++ /dev/null @@ -1,4 +0,0 @@ -::: {.callout-warning appearance="default" icon="true"} -🚧 This section is still in active development and is subject to changes -🚧 -::: diff --git a/index.qmd b/index.qmd deleted file mode 100644 index 3d0f710..0000000 --- a/index.qmd +++ /dev/null @@ -1,5 +0,0 @@ ---- -title: "Welcome to NAME!" ---- - -{{< include /docs/includes/_wip.qmd >}} diff --git a/justfile b/justfile index e297400..cf5ff37 100644 --- a/justfile +++ b/justfile @@ -2,16 +2,12 @@ just --list --unsorted # Run all build-related recipes in the justfile -run-all: install-deps format-python check-python test-python check-commits build-website +run-all: install-deps format-python check-python check-commits # Install Python package dependencies install-deps: poetry install -# Run the Python tests -test-python: - poetry run pytest - # Check Python code with the linter for any errors that need manual attention check-python: poetry run ruff check . @@ -21,13 +17,6 @@ format-python: poetry run ruff check --fix . poetry run ruff format . -# Build the documentation website using Quarto -build-website: - # To let Quarto know where python is. - export QUARTO_PYTHON=.venv/bin/python3 - poetry run quartodoc build - poetry run quarto render --execute - # Run checks on commits with non-main branches check-commits: #!/bin/zsh diff --git a/poetry.lock b/poetry.lock new file mode 100644 index 0000000..7578301 --- /dev/null +++ b/poetry.lock @@ -0,0 +1,2047 @@ +# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. + +[[package]] +name = "annotated-types" +version = "0.7.0" +description = "Reusable constraint types to use with typing.Annotated" +optional = false +python-versions = ">=3.8" +files = [ + {file = "annotated_types-0.7.0-py3-none-any.whl", hash = "sha256:1f02e8b43a8fbbc3f3e0d4f0f4bfc8131bcb4eebe8849b8e5c773f3a1c582a53"}, + {file = "annotated_types-0.7.0.tar.gz", hash = "sha256:aff07c09a53a08bc8cfccb9c85b05f1aa9a2a6f23728d790723543408344ce89"}, +] + +[[package]] +name = "attrs" +version = "25.1.0" +description = "Classes Without Boilerplate" +optional = false +python-versions = ">=3.8" +files = [ + {file = "attrs-25.1.0-py3-none-any.whl", hash = "sha256:c75a69e28a550a7e93789579c22aa26b0f5b83b75dc4e08fe092980051e1090a"}, + {file = "attrs-25.1.0.tar.gz", hash = "sha256:1c97078a80c814273a76b2a298a932eb681c87415c11dee0a6921de7f1b02c3e"}, +] + +[package.extras] +benchmark = ["cloudpickle", "hypothesis", "mypy (>=1.11.1)", "pympler", "pytest (>=4.3.0)", "pytest-codspeed", "pytest-mypy-plugins", "pytest-xdist[psutil]"] +cov = ["cloudpickle", "coverage[toml] (>=5.3)", "hypothesis", "mypy (>=1.11.1)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"] +dev = ["cloudpickle", "hypothesis", "mypy (>=1.11.1)", "pre-commit-uv", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"] +docs = ["cogapp", "furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier (<24.7)"] +tests = ["cloudpickle", "hypothesis", "mypy (>=1.11.1)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"] +tests-mypy = ["mypy (>=1.11.1)", "pytest-mypy-plugins"] + +[[package]] +name = "certifi" +version = "2025.1.31" +description = "Python package for providing Mozilla's CA Bundle." +optional = false +python-versions = ">=3.6" +files = [ + {file = "certifi-2025.1.31-py3-none-any.whl", hash = "sha256:ca78db4565a652026a4db2bcdf68f2fb589ea80d0be70e03929ed730746b84fe"}, + {file = "certifi-2025.1.31.tar.gz", hash = "sha256:3d5da6925056f6f18f119200434a4780a94263f10d1c21d032a6f6b2baa20651"}, +] + +[[package]] +name = "chardet" +version = "5.2.0" +description = "Universal encoding detector for Python 3" +optional = false +python-versions = ">=3.7" +files = [ + {file = "chardet-5.2.0-py3-none-any.whl", hash = "sha256:e1cf59446890a00105fe7b7912492ea04b6e6f06d4b742b2c788469e34c82970"}, + {file = "chardet-5.2.0.tar.gz", hash = "sha256:1b3b6ff479a8c414bc3fa2c0852995695c4a026dcd6d0633b2dd092ca39c1cf7"}, +] + +[[package]] +name = "charset-normalizer" +version = "3.4.1" +description = "The Real First Universal Charset Detector. 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Johnston ", "Kristiane Beicher ", - "Signe Kirk Brødbæk ", - "Marton Vago ", ] maintainers = [ "Luke W. Johnston ", "Kristiane Beicher ", - "Signe Kirk Brødbæk ", - "Marton Vago ", ] readme = "README.md" -homepage = "https://NAME.seedcase-project.org" -repository = "https://github.com/seedcase-project/REPO" +repository = "https://github.com/seedcase-project/template-example-repo" license = "MIT" [tool.poetry.urls] -"Bug Tracker" = "https://github.com/seedcase-project/REPO/issues" +"Bug Tracker" = "https://github.com/seedcase-project/template-example-repo/issues" [tool.poetry.dependencies] python = "^3.12" +polars = "^1.24.0" +pyjanitor = "^0.30.0" +seedcase-sprout = {git = "https://github.com/seedcase-project/seedcase-sprout.git"} [tool.poetry.group.test.dependencies] pytest = "^8.3.2" @@ -35,10 +33,3 @@ ruff = "^0.6.2" requires = ["poetry-core"] build-backend = "poetry.core.masonry.api" -[tool.pytest.ini_options] -addopts = [ - # A short traceback mode to make it easier to view - "--tb=short", - # Use the package in `src/` - "--import-mode=importlib", -] diff --git a/src/PACKAGE-NAME/__init__.py b/src/PACKAGE-NAME/__init__.py deleted file mode 100644 index e69de29..0000000 diff --git a/tests/__init__.py b/tests/__init__.py deleted file mode 100644 index 8e07441..0000000 --- a/tests/__init__.py +++ /dev/null @@ -1 +0,0 @@ -"""Module containing all tests."""