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diff --git a/.nojekyll b/.nojekyll
@@ -1 +1 @@
-f4fd909e
+33742831
diff --git a/CODE_OF_CONDUCT.pdf b/CODE_OF_CONDUCT.pdf
diff --git a/CONTRIBUTING.pdf b/CONTRIBUTING.pdf
diff --git a/GOVERNANCE.pdf b/GOVERNANCE.pdf
diff --git a/LICENSE.pdf b/LICENSE.pdf
diff --git a/README.md b/README.md
@@ -55,8 +55,16 @@ The following folders contain:
 
 ## Installing and updating sources
 
-You'll need to install all the packages for this project with (while
-inside the R Project):
+If you install [justfile](https://just.systems/man/en/packages.html),
+you can build everything by opening up a Terminal (while having the
+working directory be the project) and running:
+
+``` bash
+just build
+```
+
+Alternatively, you can also do it in R. You'll need to install all the
+packages for this project with (while inside the R Project):
 
 ``` r
 # install.packages("renv")

diff --git a/ROADMAP.pdf b/ROADMAP.pdf
diff --git a/doc/appendices.pdf b/doc/appendices.pdf
diff --git a/doc/charting/Alessandroni-2022.pdf b/doc/charting/Alessandroni-2022.pdf
diff --git a/doc/charting/Bush-2022.pdf b/doc/charting/Bush-2022.pdf
diff --git a/doc/charting/Dora-2024.pdf b/doc/charting/Dora-2024.pdf
diff --git a/doc/charting/Grange-2023.pdf b/doc/charting/Grange-2023.pdf
diff --git a/doc/charting/Kohrs-2023.pdf b/doc/charting/Kohrs-2023.pdf
diff --git a/doc/charting/ManyPrimates-2019.pdf b/doc/charting/ManyPrimates-2019.pdf
diff --git a/doc/charting/ManyPrimates-2021.pdf b/doc/charting/ManyPrimates-2021.pdf
diff --git a/doc/charting/Niso-2022.pdf b/doc/charting/Niso-2022.pdf
diff --git a/doc/charting/Sholler-2019.pdf b/doc/charting/Sholler-2019.pdf
diff --git a/doc/charting/TorresEspin-2021.pdf b/doc/charting/TorresEspin-2021.pdf
diff --git a/doc/charting/Turoman-2022.pdf b/doc/charting/Turoman-2022.pdf
diff --git a/doc/charting/index.pdf b/doc/charting/index.pdf
diff --git a/doc/paper.html b/doc/paper.html
diff --git a/doc/paper.pdf b/doc/paper.pdf
diff --git a/doc/protocol.pdf b/doc/protocol.pdf
diff --git a/doc/reflections/daniel-ibsen.pdf b/doc/reflections/daniel-ibsen.pdf
diff --git a/doc/reflections/hannah-chatwin.pdf b/doc/reflections/hannah-chatwin.pdf
diff --git a/doc/reflections/index.pdf b/doc/reflections/index.pdf
diff --git a/doc/reflections/luke-johnston.html b/doc/reflections/luke-johnston.html
@@ -301,6 +301,7 @@ <h2 id="toc-title">On this page</h2>
   <li><a href="#section-2" id="toc-section-2" class="nav-link" data-scroll-target="#section-2">2022-08-05</a></li>
   <li><a href="#section-3" id="toc-section-3" class="nav-link" data-scroll-target="#section-3">2023-05-12</a></li>
   <li><a href="#section-4" id="toc-section-4" class="nav-link" data-scroll-target="#section-4">2024-06-06</a></li>
+  <li><a href="#section-5" id="toc-section-5" class="nav-link" data-scroll-target="#section-5">2025-01-08</a></li>
   </ul>
 <div class="quarto-alternate-formats"><h2>Other Formats</h2><ul><li><a href="luke-johnston.pdf"><i class="bi bi-file-pdf"></i>PDF</a></li></ul></div></nav>
     </div>
@@ -357,6 +358,14 @@ <h2 class="anchored" data-anchor-id="section-4">2024-06-06</h2>
 <ul>
 <li>Progress has been going great, the use of a targets pipeline has really helped, especially after coming back to work on this after a while. There are some areas that I wish could be more automated, but I think that it might not really be possible for now.</li>
 </ul>
+</section>
+<section id="section-5" class="level2">
+<h2 class="anchored" data-anchor-id="section-5">2025-01-08</h2>
+<ul>
+<li>Back at it for the new year and we’re moving along a lot more! Finished reading the documents, charted them, and now we’re in the paper writing phase! :tada:</li>
+<li>I took some time making a website to more easily showcase our work as well as to auto-generate the PDF when we upload it to Zenodo and potentially to a journal. Plus it looks nicer and makes it clearer how we’ll structure things, at least for me.</li>
+<li>It felt much smoother getting back into things this time. I think the structure we’ve set up has really helped with that.</li>
+</ul>
 
 
 </section>

diff --git a/doc/reflections/luke-johnston.pdf b/doc/reflections/luke-johnston.pdf
diff --git a/doc/reflections/mario-garcia.pdf b/doc/reflections/mario-garcia.pdf
diff --git a/doc/reviews/daniel.pdf b/doc/reviews/daniel.pdf
diff --git a/doc/reviews/index.pdf b/doc/reviews/index.pdf
diff --git a/doc/reviews/luke.pdf b/doc/reviews/luke.pdf
diff --git a/doc/reviews/mario.pdf b/doc/reviews/mario.pdf
diff --git a/doc/reviews/review-stages.pdf b/doc/reviews/review-stages.pdf
diff --git a/doc/reviews/themes.pdf b/doc/reviews/themes.pdf
diff --git a/index.pdf b/index.pdf
diff --git a/search.json b/search.json
diff --git a/sitemap.xml b/sitemap.xml
@@ -2,11 +2,11 @@
 <urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9">
   <url>
     <loc>https://science-collective.github.io/scoping-review/GOVERNANCE.html</loc>
-    <lastmod>2025-01-08T10:56:47.357Z</lastmod>
+    <lastmod>2025-01-08T14:20:53.604Z</lastmod>
   </url>
   <url>
     <loc>https://science-collective.github.io/scoping-review/index.html</loc>
-    <lastmod>2025-01-08T14:09:21.042Z</lastmod>
+    <lastmod>2025-01-08T14:20:53.616Z</lastmod>
   </url>
   <url>
     <loc>https://science-collective.github.io/scoping-review/doc/charting/Kohrs-2023.html</loc>
@@ -22,91 +22,91 @@
   </url>
   <url>
     <loc>https://science-collective.github.io/scoping-review/doc/charting/Grange-2023.html</loc>
-    <lastmod>2025-01-08T13:40:47.479Z</lastmod>
+    <lastmod>2025-01-08T14:20:53.606Z</lastmod>
   </url>
   <url>
     <loc>https://science-collective.github.io/scoping-review/doc/charting/Dora-2024.html</loc>
     <lastmod>2025-01-08T10:56:47.371Z</lastmod>
   </url>
   <url>
     <loc>https://science-collective.github.io/scoping-review/doc/charting/index.html</loc>
-    <lastmod>2025-01-08T10:56:47.371Z</lastmod>
+    <lastmod>2025-01-08T14:20:53.606Z</lastmod>
   </url>
   <url>
     <loc>https://science-collective.github.io/scoping-review/doc/presentations/steno-epi-meeting-240603/index.html</loc>
     <lastmod>2025-01-08T10:56:47.373Z</lastmod>
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     <loc>https://science-collective.github.io/scoping-review/doc/instructions/index.html</loc>
-    <lastmod>2025-01-08T13:56:58.658Z</lastmod>
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+    <lastmod>2025-01-08T14:20:53.615Z</lastmod>
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+    <lastmod>2025-01-08T14:20:53.615Z</lastmod>
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     <loc>https://science-collective.github.io/scoping-review/doc/reviews/daniel.html</loc>
-    <lastmod>2025-01-08T10:56:47.374Z</lastmod>
+    <lastmod>2025-01-08T14:20:53.615Z</lastmod>
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     <loc>https://science-collective.github.io/scoping-review/doc/appendices.html</loc>
-    <lastmod>2025-01-08T10:56:47.371Z</lastmod>
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   <url>
     <loc>https://science-collective.github.io/scoping-review/CONTRIBUTING.html</loc>
-    <lastmod>2025-01-08T13:44:14.697Z</lastmod>
+    <lastmod>2025-01-08T14:20:53.603Z</lastmod>
   </url>
   <url>
     <loc>https://science-collective.github.io/scoping-review/CODE_OF_CONDUCT.html</loc>
     <lastmod>2025-01-08T10:56:47.357Z</lastmod>
   </url>
   <url>
     <loc>https://science-collective.github.io/scoping-review/LICENSE.html</loc>
-    <lastmod>2025-01-08T13:50:51.240Z</lastmod>
+    <lastmod>2025-01-08T14:20:53.604Z</lastmod>
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     <loc>https://science-collective.github.io/scoping-review/doc/reviews/mario.html</loc>
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+    <lastmod>2025-01-08T14:20:53.616Z</lastmod>
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     <loc>https://science-collective.github.io/scoping-review/doc/reviews/luke.html</loc>
-    <lastmod>2025-01-08T10:56:47.375Z</lastmod>
+    <lastmod>2025-01-08T14:20:53.616Z</lastmod>
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   <url>
     <loc>https://science-collective.github.io/scoping-review/doc/reflections/index.html</loc>
-    <lastmod>2025-01-08T10:56:47.374Z</lastmod>
+    <lastmod>2025-01-08T14:20:53.615Z</lastmod>
   </url>
   <url>
     <loc>https://science-collective.github.io/scoping-review/doc/reflections/luke-johnston.html</loc>
-    <lastmod>2025-01-08T10:56:47.374Z</lastmod>
+    <lastmod>2025-01-08T14:31:48.365Z</lastmod>
   </url>
   <url>
     <loc>https://science-collective.github.io/scoping-review/doc/reflections/daniel-ibsen.html</loc>
-    <lastmod>2025-01-08T13:29:55.265Z</lastmod>
+    <lastmod>2025-01-08T14:20:53.615Z</lastmod>
   </url>
   <url>
     <loc>https://science-collective.github.io/scoping-review/doc/paper.html</loc>
-    <lastmod>2025-01-08T13:32:43.980Z</lastmod>
+    <lastmod>2025-01-08T16:49:49.888Z</lastmod>
   </url>
   <url>
     <loc>https://science-collective.github.io/scoping-review/doc/charting/Sholler-2019.html</loc>
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     <loc>https://science-collective.github.io/scoping-review/doc/charting/Niso-2022.html</loc>
@@ -118,22 +118,22 @@
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   <url>
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   <url>
     <loc>https://science-collective.github.io/scoping-review/doc/protocol.html</loc>
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   <url>
     <loc>https://science-collective.github.io/scoping-review/ROADMAP.html</loc>
-    <lastmod>2025-01-08T13:45:07.343Z</lastmod>
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   </url>
 </urlset>