APE 1.1.11 - DOI release

Fix needed to obtain the DOI

APE 1.1.9 - Export abstract and executable CWL

Export abstract and executable CWL
Improved synthesis execution flags

APE 1.1.8 - Improved Class structure and naming

Improved class structure and naming to support extensions with additional solving techniques. The new structure allows for easy extensions with other (non-SAT) solvers.

APE 1.1.7 - Adding synthesis execution flags

• Added synthesis execution flag (class SATsolutionsList)
• Improved SolutionWorkflow class by adding methods for PNG retrieval of the workflows (e.g., getDataflowGraphPNG(..))

APE 1.1.5 - Adding long predicate labels

• Added method PredicateLabel.getLongLabel()
• Improved ModuleNode.getNodeFullLabel() method and renamed to ModuleNode.getNodeLongLabel()

APE 1.1.4 - Improving SolutionWorkflowNode (updated)

• Introduced method SolutionWorkflowNode.getNodeFullLabel()
• Improved method descriptions

APE 1.1.3 - Improved synthesis run handling

Implemented:

Cleaning temp files used for synthesis encoding after each SAT run
Introduced "timeout(sec)" configuration field

APE 1.1.2 - Constraint parsing fix

Parsing of constraints got fixed. The error occurred in case of defining constraints over concrete operations that are not part of the ontology.

APE 1.1.1 - Strict taxonomy hiararchy

Improvements:

• Implemented stricter tool annotations and added the corresponding core configuration field (strict_tool_annotations)
• Removed message passing approach
• Improved APE API (added new methods and improved documentation)

APE 1.0.3 - Interface improvements

• Provided interface for building constraints from JSON objects
• Tested new functionalities
• Improved constraint descriptions (ConstraintTemplate in ConstraintFactory)
• Improved constraint printouts in debug mode