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Improve user interface#117

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vedran-kasalica merged 13 commits intomainsanctuuary/APE:mainfrom biotools-apisanctuuary/APE:biotools-apiCopy head branch name to clipboardOct 21, 2024

+1,504-1,913

Commits

Commits on Sep 23, 2024

• Improve APE documentation, bio.tools API and constraint templates

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  0aae09f

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Commits on Sep 25, 2024

• Refactor bio.tools API and add expose the feature at the CLI level

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  cf5bd23

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• Simplify PR and issue templates

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  ec70fa8

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• Update build to java 17

  vedran-kasalica

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  54e6c2e

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• Update the path to the test repo

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  7f8b7b9

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• Update logging, bio.tools API and cwl naming

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  783f359

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• Add JavaDocs

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  5aa1380

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Commits on Oct 1, 2024

• Remove the outdated paper submission, intended for JOSS publication that was canceled

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  06cf21e

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• Refactor BioToolsAPI and include tests + update the build job as the used repo was renamed

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  52e3e7c

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Commits on Oct 2, 2024

• Make documentation consistent

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  e43ee05

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• Updated CWL creation to support CWL tool description generation

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  3589f22

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Commits on Oct 19, 2024

• Simplify CLI log, add tests and improve pull-a-tool feature

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  ab275fe

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• Remove quotation from the issue-template label

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  6032f42

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