diff --git a/.github/workflows/mvnbuild.yml b/.github/workflows/mvnbuild.yml index 9ade782..4874a46 100644 --- a/.github/workflows/mvnbuild.yml +++ b/.github/workflows/mvnbuild.yml @@ -35,8 +35,8 @@ jobs: pip3 install cwlref-runner - name: Test CWL generation run: | - git clone https://github.com/Workflomics/domain-annotations - cd domain-annotations/WombatP_tools + git clone https://github.com/Workflomics/containers + cd domains/proteomics java -jar ../../target/APE-*-executable.jar ./config.json cd ./CWL cwltool --enable-dev --validate candidate_workflow_1.cwl diff --git a/src/main/java/nl/uu/cs/ape/domain/APEDomainSetup.java b/src/main/java/nl/uu/cs/ape/domain/APEDomainSetup.java index 8e813d8..431ea59 100644 --- a/src/main/java/nl/uu/cs/ape/domain/APEDomainSetup.java +++ b/src/main/java/nl/uu/cs/ape/domain/APEDomainSetup.java @@ -9,7 +9,6 @@ import org.json.JSONException; import org.json.JSONObject; -import lombok.Getter; import lombok.Setter; import lombok.extern.slf4j.Slf4j; import nl.uu.cs.ape.configuration.APECoreConfig; @@ -576,7 +575,7 @@ public void localCNF(File satInputFile, SATAtomMappings mappings) throws IOExcep String encoding = APEUtils.convertCNF2humanReadable(cnfStream, mappings); cnfStream.close(); - APEFiles.write2file(encoding, new File(writeLocalCNF), false); + APEFiles.write2file(encoding, new File(writeLocalCNF), false); } }