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Error in output of liana_wrap #183

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shiau123 opened this issue Dec 3, 2024 · 1 comment
Open

Error in output of liana_wrap #183

shiau123 opened this issue Dec 3, 2024 · 1 comment

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@shiau123
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shiau123 commented Dec 3, 2024

Hi, Liana team and liana users

I encountered an error in the first step of running liana as below:

liana_test <- liana_wrap(testdata2)
Expression from the RNA assay will be used
Running LIANA with seurat_annotations as labels!
Error in exec(output, ...) :
(converted from warning) 3465 genes and/or 0 cells were removed as they had no counts!

-> rlang::last_trace()
<error/rlang_error>
Error:
! Can't create layer without a stat.

Backtrace:

  1. └─ggplot2::layer(testdata)
  2. └─cli::cli_abort("Can't create layer without a stat.", call = call_env)
  3. └─rlang::abort(...)
    

Do you have any idea what is the issue?

Many thanks.

@shiau123
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shiau123 commented Dec 4, 2024

It turns out it is the rlang is too out of update.

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