pkgdown action: install fgsea before other dependencies

saezlab · Dec 20, 2024 · eef64bc · eef64bc
1 parent 6967aea
commit eef64bc
Showing 1 changed file with 5 additions and 0 deletions.
diff --git a/.github/workflows/Build_gh-pages.yml b/.github/workflows/Build_gh-pages.yml
@@ -20,6 +20,11 @@ jobs:
         with:
           use-public-rspm: true
 
+      - name: Install fgsea
+        run: |
+          Rscript -e 'install.packages("remotes")'
+          Rscript -e 'remotes::install_github("ctlab/fgsea")'  # see: https://github.com/ctlab/fgsea/issues/165
+
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
           extra-packages: any::pkgdown, local::.