updated manual and documentation

saezlab · Feb 13, 2025 · bf5c928 · bf5c928
1 parent 16ed452
commit bf5c928
Show file tree

Hide file tree

Showing 4 changed files with 58 additions and 2 deletions.
diff --git a/NAMESPACE b/NAMESPACE
@@ -2,6 +2,7 @@
 
 export(ClusterORA)
 export(DMA)
+export(EquivalentIDs)
 export(LoadGaude)
 export(LoadHallmarks)
 export(LoadKEGG)
@@ -31,11 +32,14 @@ export(metaproviz_config_path)
 export(metaproviz_load_config)
 export(metaproviz_reset_config)
 export(metaproviz_save_config)
+importFrom(KEGGREST,keggGet)
+importFrom(KEGGREST,keggList)
 importFrom(OmnipathR,ambiguity)
 importFrom(OmnipathR,config_path)
 importFrom(OmnipathR,id_types)
 importFrom(OmnipathR,load_config)
 importFrom(OmnipathR,logfile)
+importFrom(OmnipathR,ramp_table)
 importFrom(OmnipathR,read_log)
 importFrom(OmnipathR,reset_config)
 importFrom(OmnipathR,save_config)
@@ -134,6 +138,7 @@ importFrom(purrr,map_int)
 importFrom(purrr,partial)
 importFrom(purrr,reduce)
 importFrom(qcc,mqcc)
+importFrom(rappdirs,user_cache_dir)
 importFrom(readr,cols)
 importFrom(readr,read_csv)
 importFrom(reshape2,melt)
@@ -154,6 +159,7 @@ importFrom(stats,lm)
 importFrom(stats,p.adjust)
 importFrom(stats,shapiro.test)
 importFrom(stringr,str_match)
+importFrom(stringr,str_remove)
 importFrom(stringr,str_sub)
 importFrom(stringr,str_to_lower)
 importFrom(stringr,str_trim)

diff --git a/man/EquivalentIDs.Rd b/man/EquivalentIDs.Rd
diff --git a/man/LoadRAMP.Rd b/man/LoadRAMP.Rd
diff --git a/man/ToyData.Rd b/man/ToyData.Rd