test action: install fgsea from github

saezlab · Dec 20, 2024 · 088eb36 · 088eb36
1 parent 018f597
commit 088eb36
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/.github/workflows/Test_Package-build.yml b/.github/workflows/Test_Package-build.yml
@@ -41,7 +41,9 @@ jobs:
           use-public-rspm: true
 
       - name: Install remotes
-        run: Rscript -e 'install.packages("remotes")'
+        run: |
+          Rscript -e 'install.packages("remotes")'
+          Rscript -e 'remotes::install_github("ctlab/fgsea")'  # see: https://github.com/ctlab/fgsea/issues/165
 
       - name: Install MetaProViz from git by pak
         run: Rscript -e 'remotes::install_github("saezlab/MetaProViz")' #we install from GitHub as if we are a random user