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WIP: Rv restructure #1

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WIP: Rv restructure #1

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@RivkadeVries
createConstraints() restructured, n added to stop argument in tests
2a086f8
@RivkadeVries
stop_test() renamed and restructured
bf30ba1
@RivkadeVries
File name test_must_stop adapted
f9a9af6
@RivkadeVries
prob restructured and renamed into probabilities_and_likelihoods
d4f6231
@RivkadeVries
get_ll_in_nlm_format() removed
fb85c16
@RivkadeVries
get_fisher_information restructured
0da37a5
@RivkadeVries
Some bugs fixed
5b132e4
@RivkadeVries
Bugs fixed
7841373
@RivkadeVries
estimate_latent_trait restructured
d49b6d8
@RivkadeVries
test_must_stop simplified
5d78600
@RivkadeVries
get_item_index_max_information restructured
f942610
@RivkadeVries
get_item_index_max_information_constrained(), get_item_information(),…
2d2317d 
… and get_posterior_expected_kl_information() restructured
@RivkadeVries
test_must_stop() simplified
1eba517
@RivkadeVries
get_best_item(), get_next_item(), ShadowCAT(), and simulate_answer() …
2d495f9 
…restructured
@RivkadeVries
Documentation ShadowCAT adapted, initial estimate and variance in tes…
7eab1c5 
…t function as arguments
@RivkadeVries
Prior <- NULL removed from probabilities_and_likelihoods()
ab8dd73
@RivkadeVries
Prior, eta, guessing arguments moved to different place
d5c4b63
@RivkadeVries
Documentation: prior does not need to be defined anymore when not req…
d696fd3 
…uired for computations
@RivkadeVries
Some documentation changed, initTest() and initPerson() removed, outp…
b29d6ca 
…ut constraints_correct_format simplified
@RivkadeVries
file constraints_correct_format renamed into constraints_lp_format
86e4aff
@RivkadeVries
subset.ShadowCAT.items removed, file names ShadowCAT in lowercase
e1f7a6c
@RivkadeVries
simulate functions moved to testthat folder
d19e646
@RivkadeVries
Documentation and wording improved in simulate functions
ce766a2
@RivkadeVries
simulate_answer() simplified
a095656
@RivkadeVries
Uppercase X into lowercase x
6ee5ca0
@RivkadeVries
In test probabilities_and_likelihoods changed theta values in non zer…
f45f3a1 
…o values
@RivkadeVries
In tests get_fisher_information changed theta values into nonzero values
a41185f
@RivkadeVries
Unused test files removed
ad6089c
@RivkadeVries
Test functions in estimate_latend_trait() with EAP estimate un-commented
1b7e922
@RivkadeVries
Tests with EAP uncommented for get_posterior_expected_l_information a…
8b8fc62 
…nd get_item_information
@RivkadeVries
continue_test element added to shadowcat output
b8ee710
@RivkadeVries
Documentation item_information improved
9d22c1b
@RivkadeVries
Name change: get_item_information changed into get_summarized_informa…
002c1b0 
…tion
@RivkadeVries
number grid points also defined for > 5 dimensions
405f892
@RivkadeVries
Validate checks added
d6484c7
@RivkadeVries
get_eap_estimate_riemannsum() added
734e552
@RivkadeVries
Shadow cat now allows choice between gauss hermite quadrature and rie…
1d1a85b 
…mannsum as integration method for the eap estimate. Need to incorporate this in PEKL function yet
@RivkadeVries
get_eap_estimate_riemannsum() now allows choice between riemannsum or…
57d0901 
… gaussian hermit quadrature. get_eap_estimate_riemannsum() now allows adapt = NULL for uniform prior
@RivkadeVries
Small change in documentation for get_eap_estimate_riemannsum()
2c3068e
@RivkadeVries
responses changed into answers
45edffa
@RivkadeVries RivkadeVries reopened this Apr 11, 2016
@RivkadeVries
In PEKL likelihood_or_post_density_theta estimator should be EAP
a45a477
@RivkadeVries
My name added to authors
6fc748d
@RivkadeVries
Bug cutoffs fixed
39abc91
@RivkadeVries
Test for test_must_stop slightly changed
dd4425d
@RivkadeVries
Shadow cat can now handle uniform prior, and the mean of the normal p…
c8ce42f 
…rior can be any value
@RivkadeVries
Tests added for uniform prior and non zero prior mean, safe_maximum r…
62e391a 
…eplaced by safe_ml, nearPD added to trans(),
@RivkadeVries
MAP should be maximum a posteriori in documentation
0687fda
@RivkadeVries
Comment added in estimate_latent_trait example
65ae263
@RivkadeVries
get_item_index_max_information() takes finished dimensions into account
9144e2d
@RivkadeVries
Simulations rerun for one repetition per condition
8219930
@RivkadeVries
Simulations added for uniform prior one dimension
312c317
@RivkadeVries
Safer grid point transformation with uniform prior, simulations added…
23c7df0 
… for 3 dims uniform prior maximum aposteriori estimation
@RivkadeVries
Simulations added 3 dim EAP estimator uniform prior; better definitio…
79831f7 
…n of grid points in PEKL function
@RivkadeVries
Better tests characteristics and constraints added
2d5a067
@RivkadeVries
Checks NA patterns beta and eta added; indeces corrected as indices
d8ce30d
@RivkadeVries
init.quad with forcePD
66b901d
@Hampei Hampei changed the title Rv restructure WIP: Rv restructure May 27, 2024
@marten marten marked this pull request as draft May 29, 2024 08:12
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@RivkadeVries