cluster.yaml

__default__:
  #partition: chimera
  queue: premium
  cores: 1
  mem: 3750
  time: 144:00
  name: $(basename $(pwd)):{rule}:{wildcards}
  output: logs/{rule}:{wildcards}.stdout
  error: logs/{rule}:{wildcards}.stderr
annotateVCF:
    cores: 4
    mem: 3000
#    time: 600
liftOverVCFs:
    cores: 4
    mem: 3000
#    time: '360'
Biallelic_Combine_Indels_and_SNPs:
    cores: 16
    mem: 3750
#    time: '180'
recombineChunks:
    cores: 8
    mem: 3750
#    time: '180'
recombineChromosomes:
    cores: 16
    mem: 3750
setID:
    cores: 32
    mem: 50
Filter9_Sample_Missingness:
    cores: 1
    mem: 32000
KingRelatedness:
    cores: 1
    mem: 128000
#    time: '360'
convertPlinkToVCF:
    cores: 4
    mem: 3750
#    time: '360'
convertVCFtoPLINK:
    cores: 4
    mem: 3750
#    time: '360'
removeRelatedSamples:
    cores: 4
    mem: 3750
#    time: '360'
filterMAF:
    cores: 4
    mem: 3750
#    time: '360'