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index.php
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<?php
include('header.php');
?>
<!-- ####################################################################################################### -->
<div class="wrapper">
<div id="featured_slide" class="clear">
<!-- ###### -->
<div class="overlay_left"></div>
<div id="featured_content">
<div class="featured_box" id="fc1"><img src="images/demo/slider/workflow1.png" alt="" />
</div>
<div class="featured_box" id="fc2"><img src="images/demo/slider/fig2.jpg" alt="" />
</div>
<div class="featured_box" id="fc3"><img src="images/demo/slider/fig3.jpg" alt="" />
</div>
<div class="featured_box" id="fc4"><img src="images/demo/slider/fig4.jpg" alt="" />
</div>
<div class="featured_box" id="fc5"><img src="images/demo/slider/fig5.jpg" alt="" />
</div>
</div>
<ul id="featured_tabs">
<li><a href="#fc1">eMED Analysis Workflow</a></li>
<li><a href="#fc2">Embryo Development Process</a></li>
<li><a href="#fc3">Cell fate regulation in early embryo</a></li>
<li><a href="#fc4">H3K4me3 in mouse early embryos</a></li>
<li class="last"><a href="#fc5">Dynamics landscape of histone modification</a></li>
</ul>
<div class="overlay_right"></div>
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<div class="wrapper row3">
<div class="rnd">
<div id="container" class="clear">
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<div id="content">
<div id="comments">
<h2>Video showing mammalian early embryogenesis</h2>
<ul class="commentlist">
<iframe width="600" height="520" src="https://www.youtube.com/embed/dAOWQC-OBv0" frameborder="0" allowfullscreen></iframe>
</ul>
<p class="readmore"><a href="https://www.youtube.com/results?search_query=Embryonic+Development"><b>More Videos »</b></a></p>
</div>
</div>
<div id="column">
<div class="holder">
<h2>Publication</h2>
<h2 class="title"><img src="images/demo/60x60.gif" alt="" / width="60" height="60">Volume 44, Issue D1<br>04 January 2016</h2>
<p><b>RBP-Var: a database of functional variants involved in regulation mediated by RNA-binding proteins</b></p>
<p class="imgholder"><img src="images/demo/240x90.gif" alt="" / width="240" height="48"></p>
<p>It has been revealed that single nucleotide variants (SNVs) that alter RNA structure, also known as RiboSNitches, exhibit 3-fold greater local structure changes than replicates of the same DNA sequence, demonstrated by the fact that depletion of RiboSNitches could result in the alteration of specific RNA shapes at thousands of sites, including 3' UTRs, binding sites of microRNAs and RBPs. However, the network between SNVs and post-transcriptional regulation remains unclear. Here, we developed RBP-Var, a database freely available at <a href= "http://www.rbp-var.biols.ac.cn/">http://www.rbp-var.biols.ac.cn/</a>, which provides annotation of functional variants involved in post-transcriptional interaction and regulation. </p>
<p class="readmore"><a href="https://academic.oup.com/nar/article/44/D1/D154/2503099/RBP-Var-a-database-of-functional-variants-involved?searchresult=1s">More Reading »</a></p>
</div>
</div>
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</div>
</div>
</div>
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<div class="wrapper row3">
<div class="rnd">
<div id="container" class="clear">
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<div id="homepage" class="clear">
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<div id="academiclinks" class="clear">
<h2>Epigenetic Data Browsers and Repositories</h2>
<div class="linkbox">
<ul>
<li><a href="http://bigd.big.ac.cn/methbank">» Methbank</a></li>
<li><a href="http://epigenomesportal.ca/ihec/">» IHEC Data Portal</a></li>
<li><a href="http://egg2.wustl.edu/roadmap/web_portal/">» ROADMAP Epigenomics</a></li>
<li><a href="http://www.epigenomes.ca/data-release/">» CEEHRC Platform</a></li>
<li><a href="http://deepblue.mpi-inf.mpg.de/">» DeepBlue</a></li>
<li><a href="http://www.epigenomebrowser.org/">» Epigenome Browser</a></li>
<li><a href="http://epigenomegateway.wustl.edu/browser/">» WashU Epigenome Browser</a></li>
<li><a href="http://uswest.ensembl.org/info/website/tutorials/encode.html">» Ensembl</a></li>
<li><a href="http://gralggen.lsi.upc.edu/recerca/genexp/">» GenExp</a></li>
<li><a href="http://www.genboree.org/epigenomeatlas/index.rhtml">» The Epigenome Atlas</a></li>
<li><a href="http://4dgenome.research.chop.edu">» 4DGenome</a></li>
<li><a href="http://3cdb.big.ac.cn">» 3CDB</a></li>
</ul>
</div>
<div class="linkbox">
<ul>
<li><a href="http://www.neuroepigenomics.org/methylomedb/" target="_blank" rel="noopener noreferrer">» MethylomeDB</a></li>
<li><a href="http://202.97.205.78/diseasemeth/" target="_blank" rel="noopener noreferrer">» DiseaseMeth</a></li>
<li><a href="http://bioinfo.life.hust.edu.cn/lncRNASNP/">» lncRNASNP</a></li>
<li><a href="http://zmf.umm.uni-heidelberg.de/apps/zmf/mirwalk2/">» miRWalk 2.0</a></li>
<li><a href="https://cm.jefferson.edu/rna22v2/">» RNA22v2</a></li>
<li><a href="http://www.mirbase.org/" target="_blank" rel="noopener noreferrer">» miRBase</a></li>
<li><a href="http://diana.imis.athena-innovation.gr/DianaTools/index.php">» DIANA Tools</a></li>
<li><a href="http://www.targetscan.org/">» TargetScan</a></li>
<li><a href="http://www.actrec.gov.in/histome/index.php" target="_blank" rel="noopener noreferrer">» Histome</a></li>
<li><a href="http://www.rbp-var.biols.ac.cn/">» RBP-Var</a></li>
<li><a href="http://POSTAR.ncrnalab.org">» POSTAR</a></li>
<li><a href="http://lulab.life.tsinghua.edu.cn/clipdb/">» CLIPdb</a></li>
</ul>
</div>
<div class="linkbox">
<ul>
<li><a href="http://bioconductor.org/packages/release/bioc/html/bsseq.html">» Bsseq</a></li>
<li><a href="https://github.com/thomasvangurp/epiGbs">» epiGbs</a></li>
<li><a href="http://liulab.dfci.harvard.edu/MACS/">» MACS</a></li>
<li><a href="http://home.gwu.edu/~wpeng/Software.htm">» SICER</a></li>
<li><a href="http://wanglab.ucsd.edu/star/epigram/">» Epigram:</a>
<li><a href="http://homer.salk.edu/homer/motif/">» Homer</a></li>
<li><a href="http://meme-suite.org" target="_blank" rel="noopener noreferrer">» The MEME Suite:</a></li>
<li><a href="http://dire.dcode.org/" target="_blank" rel="noopener noreferrer">» DiRE</a></li>
<li><a href="https://biowardrobe.com">» BioWardrobe</a></li>
<li><a href="http://galaxyproject.org/" target="_blank" rel="noopener noreferrer">» Galaxy</a></li>
<li><a href="http://przemol.github.io/seqplots/">» SeqPlots</a></li>
<li><a href="http://deeptools.readthedocs.io/en/latest/index.html">» deeptools</a></li>
</ul>
</div>
<div class="linkbox last">
<ul>
<li><a href="http://amp.pharm.mssm.edu/Enrichr/">» Enrichr</a></li>
<li><a href="http://cpdb.molgen.mpg.de/CPDB">» ConsensusPathwayDB</a></li>
<li><a href="http://bejerano.stanford.edu/great/public/html/">» GREAT</a></li>
<li><a href="http://labs.genetics.ucla.edu/horvath/CoexpressionNetwork/Rpackages/WGCNA/#abst">» WGCNA</a></li>
<li><a href="https://toppgene.cchmc.org">» ToppGene</a></li>
<li><a href="https://endeavour.esat.kuleuven.be/">» Endeavour</a></li>
<li><a href="http://www.webgestalt.org/option.php">» WebGestalt</a></li>
<li><a href="http://string-db.org">» STRING</a></li>
<li><a href="http://www.genemania.org">» GeneMANIA</a></li>
<li><a href="http://bisearch.enzim.hu/" target="_blank" rel="noopener noreferrer">» BiSearch</a></li>
<li><a href="http://www.urogene.org/methprimer" target="_blank" rel="noopener noreferrer">» MethPrimer</a></li>
<li><a href="http://www.zymoresearch.com/tools/bisulfite-primer-seeker">» Bisulfite Primer Seeker</a></li>
</ul>
</div>
</div>
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</div>
<p class="readmore"><a href="pages/gallery.html"><b>Click Here To View More Links »</b></a></p>
</div>
</div>
</div>
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<?php
include('footer.php');
?>