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build wheels on CI#619

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Merged

rapids-bot[bot] merged 69 commits intorapidsai:branch-23.12rapidsai/cucim:branch-23.12from grlee77:grelee/build-wheel-on-cigrlee77/cucim:grelee/build-wheel-on-ciCopy head branch name to clipboardNov 6, 2023

+280-85

Commits

Commits on Oct 27, 2023

• add wheel building scripts and workflow entries

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• update pr-builder entries

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• make wheel build/test scripts executable

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• call pip directly

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• temporarily disable install step of cucim bindings build

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• apply the new patch

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• remove patches and install YASM and openslide dev libs via system package manager

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• add missing apt update call

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• update build_wheel.sh

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• restore previously commented line

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• fix copy command (don't add -r and use *.so so cmake subfolder isn't copied)

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• omit build of cuslide_benchmarks and cuslide_tests on arm64

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• omit building cucim_benchmarks, cucim_tests on arm64

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• fix patch

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• omit copying bin folder

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• update dependencies.yaml to remove non-pypi files from pyproject tests requirements

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• remove imagecodecs and openslide-python test dependencies

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• add missing fi in if/else statement

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• modify CuPy package name as needed based on the CUDA version

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• allow test suite to run even if imagecodecs was not installed

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• fix path for libopenslide on Ubuntu+aarch64

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• remove unused patch

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• install imagecodecs and openslide-python on x86_64 to enable more test cases

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Commits on Oct 28, 2023

• try installing libopenslide-dev during wheel tests as well

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• skip single test case requiring libopenslide

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Commits on Oct 29, 2023

• add additional requirements used by a small number of test cases

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• check if clara test cases are causing the segfault observed on CUDA 11.8 x86_64

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Commits on Oct 30, 2023

• revert unintentional workflow file change

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• make sure which is installed on rockylinux8

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• bumpy pybind11 version

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• Merge branch 'branch-23.12' into grelee/build-wheel-on-ci

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• which was added to the container, so can remove it from the build script

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Commits on Oct 31, 2023

• Merge remote-tracking branch 'upstream/branch-23.12' into grelee/build-wheel-on-ci

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• move existing apply_wheel_modifications.sh logic into build_wheel.sh

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• refactor VERSION management following example in rapidsai/rmm#1347

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• fix package_src_dir in build_wheel.sh

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• restore python/cucim/VERSION

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• change python/cucim/VERSION used by CMake back to prior method

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• revert to old version folder C++ VERSION files

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• temporarily use separate VERSION_CPP for CMake

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• version in python/cucim/VERSION also needs to be the C++ version without 'a'

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• reduce number of separate VERSION files being used by CMake (CMakeLists.txt now use top-level VERSION_CPP)

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• remove outdated debug commands

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• Merge remote-tracking branch 'upstream/branch-23.12' into grelee/build-wheel-on-ci

  grlee77

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• use same test cases across CUDA versions

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• fix linting issue

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• change matplotlib to matplotlib-base

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• don't install imagecodecs/openslide for wheel tests (check if skipping these few tests avoid segfault)

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• Update ci/build_wheel.sh

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• Merge branch 'grelee/build-wheel-on-ci' of github.com:grlee77/cucim into grelee/build-wheel-on-ci

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• Merge branch 'branch-23.12' into grelee/build-wheel-on-ci

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• remove outdated/broken test skips. CuPy<9.0 is no longer supported

  grlee77

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• fix bad importorskip checks

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• run rapids-dependency-file-generator

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• update comment

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• matplotlib-base on conda, matplotlib for requirements/pyproject

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Commits on Nov 1, 2023

• run rapids-dependency-file-generator

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• simplify the build_wheel.sh by using 'run build_local all'

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• skip openslide-based test if the package is not installed

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• update CONTRIBUTING.md

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• apply black globally

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• cleanup test_python section of dependencies.yaml

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• Update CONTRIBUTING.md

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Commits on Nov 3, 2023

• just use NEXT_FULL_TAG directly for VERSION_CPP

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• Update ci/build_wheel.sh

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  jakirkham

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  4ca9eff

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• remove unnecessary 'needs' condition

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Commits on Nov 6, 2023

• Merge branch 'branch-23.12' into grelee/build-wheel-on-ci

  jakirkham

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• minor cleanup to build_wheel.sh

  grlee77

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• handle stripping of alpha from VERSION string in CMake to simplify CI scripts

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