From 3157b71b3a137ff7f8546a03ea304e22a7fac62e Mon Sep 17 00:00:00 2001
From: Alessandro Candido <candido.ale@gmail.com>
Date: Fri, 12 Jan 2024 16:25:00 +0100
Subject: [PATCH 01/22] Drop pulse.serial

---
 src/qibolab/instruments/qblox/cluster_qrm_rf.py | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/src/qibolab/instruments/qblox/cluster_qrm_rf.py b/src/qibolab/instruments/qblox/cluster_qrm_rf.py
index 9d582e8598..d09905eeb6 100644
--- a/src/qibolab/instruments/qblox/cluster_qrm_rf.py
+++ b/src/qibolab/instruments/qblox/cluster_qrm_rf.py
@@ -993,9 +993,9 @@ def acquire(self):
                     if len(sequencer.pulses.ro_pulses) == 1:
                         pulse = sequencer.pulses.ro_pulses[0]
                         frequency = self.get_if(pulse)
-                        acquisitions[pulse.qubit] = acquisitions[pulse.id] = (
-                            AveragedAcquisition(scope, duration, frequency)
-                        )
+                        acquisitions[pulse.qubit] = acquisitions[
+                            pulse.id
+                        ] = AveragedAcquisition(scope, duration, frequency)
                     else:
                         raise RuntimeError(
                             "Software Demodulation only supports one acquisition per channel. "
@@ -1005,9 +1005,9 @@ def acquire(self):
                     results = self.device.get_acquisitions(sequencer.number)
                     for pulse in sequencer.pulses.ro_pulses:
                         bins = results[pulse.id]["acquisition"]["bins"]
-                        acquisitions[pulse.qubit] = acquisitions[pulse.id] = (
-                            DemodulatedAcquisition(scope, bins, duration)
-                        )
+                        acquisitions[pulse.qubit] = acquisitions[
+                            pulse.id
+                        ] = DemodulatedAcquisition(scope, bins, duration)
 
         # TODO: to be updated once the functionality of ExecutionResults is extended
         return {key: acquisition for key, acquisition in acquisitions.items()}

From 71983e130eda052e15af65316413a22cca831b7d Mon Sep 17 00:00:00 2001
From: Alessandro Candido <candido.ale@gmail.com>
Date: Wed, 17 Jan 2024 19:17:35 +0100
Subject: [PATCH 02/22] Fix QM issues by stringifying pulses ID

QM requires some keys to be strings, because of the way they are later
processed. And before they were (by accident, since we were using the
serial as an identifier).
---
 tests/test_instruments_qm.py | 21 +++++++++++++++++++++
 1 file changed, 21 insertions(+)

diff --git a/tests/test_instruments_qm.py b/tests/test_instruments_qm.py
index 62b3ef994b..c81c627da0 100644
--- a/tests/test_instruments_qm.py
+++ b/tests/test_instruments_qm.py
@@ -346,8 +346,21 @@ def test_qm_register_pulse(qmplatform, pulse_type, qubit):
             },
         }
 
+<<<<<<< HEAD
     controller.config.register_element(
         platform.qubits[qubit], pulse, controller.time_of_flight, controller.smearing
+=======
+    opx.config.register_element(
+        platform.qubits[qubit], pulse, opx.time_of_flight, opx.smearing
+    )
+    opx.config.register_pulse(platform.qubits[qubit], pulse)
+    assert opx.config.pulses[str(pulse.id)] == target_pulse
+    assert target_pulse["waveforms"]["I"] in opx.config.waveforms
+    assert target_pulse["waveforms"]["Q"] in opx.config.waveforms
+    assert (
+        opx.config.elements[f"{pulse_type}{qubit}"]["operations"][str(pulse.id)]
+        == pulse.id
+>>>>>>> 5f1fb614 (Fix QM issues by stringifying pulses ID)
     )
     qmpulse = QMPulse(pulse)
     controller.config.register_pulse(platform.qubits[qubit], qmpulse)
@@ -373,11 +386,19 @@ def test_qm_register_flux_pulse(qmplatform):
         "length": pulse.duration,
         "waveforms": {"single": "constant_wf0.005"},
     }
+<<<<<<< HEAD
     qmpulse = QMPulse(pulse)
     controller.config.register_element(platform.qubits[qubit], pulse)
     controller.config.register_pulse(platform.qubits[qubit], qmpulse)
     assert controller.config.pulses[qmpulse.operation] == target_pulse
     assert target_pulse["waveforms"]["single"] in controller.config.waveforms
+=======
+    opx.config.register_element(platform.qubits[qubit], pulse)
+    opx.config.register_pulse(platform.qubits[qubit], pulse)
+    assert opx.config.pulses[str(pulse.id)] == target_pulse
+    assert target_pulse["waveforms"]["single"] in opx.config.waveforms
+    assert opx.config.elements[f"flux{qubit}"]["operations"][str(pulse.id)] == pulse.id
+>>>>>>> 5f1fb614 (Fix QM issues by stringifying pulses ID)
 
 
 def test_qm_register_pulses_with_different_frequencies(qmplatform):

From ab9f25af43626616936a1f43842b24e4aeb53e97 Mon Sep 17 00:00:00 2001
From: Alessandro Candido <candido.ale@gmail.com>
Date: Mon, 29 Jan 2024 10:28:14 +0100
Subject: [PATCH 03/22] feat(nix): Export convenience env var

---
 flake.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/flake.nix b/flake.nix
index 9b2c037a89..478c524c95 100644
--- a/flake.nix
+++ b/flake.nix
@@ -49,7 +49,7 @@
               config,
               ...
             }: {
-              packages = with pkgs; [pre-commit poethepoet jupyter zlib];
+              packages = with pkgs; [pre-commit poethepoet jupyter stdenv.cc.cc.lib zlib];
 
               env = {
                 QIBOLAB_PLATFORMS = (dirOf config.env.DEVENV_ROOT) + "/qibolab_platforms_qrc";

From 8482181f028a298e1c484d8cda79d22daaf2bcbf Mon Sep 17 00:00:00 2001
From: Stavros Efthymiou <35475381+stavros11@users.noreply.github.com>
Date: Thu, 21 Mar 2024 13:15:26 +0400
Subject: [PATCH 04/22] fix: tests after merging (compiler tests still failing)

---
 tests/test_compilers_default.py | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/tests/test_compilers_default.py b/tests/test_compilers_default.py
index 945f098c87..ff674a5462 100644
--- a/tests/test_compilers_default.py
+++ b/tests/test_compilers_default.py
@@ -37,7 +37,7 @@ def compile_circuit(circuit, platform):
 
 
 @pytest.mark.parametrize(
-    "gateargs,sequence_len",
+    "gateargs",
     [
         ((gates.I,), 1),
         ((gates.Z,), 2),
@@ -47,11 +47,11 @@ def compile_circuit(circuit, platform):
         ((gates.U3, 0.1, 0.2, 0.3), 10),
     ],
 )
-def test_compile(platform, gateargs, sequence_len):
+def test_compile(platform, gateargs):
     nqubits = platform.nqubits
     circuit = generate_circuit_with_gate(nqubits, *gateargs)
     sequence = compile_circuit(circuit, platform)
-    assert len(sequence) == nqubits * sequence_len
+    assert len(sequence) == nqubits * nseq
 
 
 def test_compile_two_gates(platform):

From 2c542d72e6dc5ea1f9f8a898550c90f72b0d52b9 Mon Sep 17 00:00:00 2001
From: Alessandro Candido <candido.ale@gmail.com>
Date: Fri, 15 Mar 2024 18:10:32 +0100
Subject: [PATCH 05/22] test: Fix remaining pytests collection errors

---
 src/qibolab/instruments/qm/config.py | 4 +++-
 tests/test_instruments_qm.py         | 4 +++-
 tests/test_instruments_rfsoc.py      | 6 +++++-
 tests/test_sweeper.py                | 4 +++-
 4 files changed, 14 insertions(+), 4 deletions(-)

diff --git a/src/qibolab/instruments/qm/config.py b/src/qibolab/instruments/qm/config.py
index cc934fb202..e6ceeca78f 100644
--- a/src/qibolab/instruments/qm/config.py
+++ b/src/qibolab/instruments/qm/config.py
@@ -4,10 +4,12 @@
 import numpy as np
 from qibo.config import raise_error
 
-from qibolab.pulses import PulseType, Rectangular
+from qibolab.pulses import Envelopes, PulseType
 
 from .ports import OPXIQ, OctaveInput, OctaveOutput, OPXOutput
 
+Rectangular = Envelopes.RECTANGULAR.value
+
 SAMPLING_RATE = 1
 """Sampling rate of Quantum Machines OPX in GSps."""
 
diff --git a/tests/test_instruments_qm.py b/tests/test_instruments_qm.py
index c81c627da0..6ec5fc455e 100644
--- a/tests/test_instruments_qm.py
+++ b/tests/test_instruments_qm.py
@@ -9,12 +9,14 @@
 from qibolab.instruments.qm.acquisition import Acquisition, declare_acquisitions
 from qibolab.instruments.qm.controller import controllers_config
 from qibolab.instruments.qm.sequence import BakedPulse, QMPulse, Sequence
-from qibolab.pulses import Pulse, PulseSequence, PulseType, Rectangular
+from qibolab.pulses import Envelopes, Pulse, PulseSequence, PulseType
 from qibolab.qubits import Qubit
 from qibolab.sweeper import Parameter, Sweeper
 
 from .conftest import set_platform_profile
 
+Rectangular = Envelopes.RECTANGULAR.value
+
 
 def test_qmpulse():
     pulse = Pulse(0, 40, 0.05, int(3e9), 0.0, Rectangular(), "ch0", qubit=0)
diff --git a/tests/test_instruments_rfsoc.py b/tests/test_instruments_rfsoc.py
index 2399ba489b..1e099e4070 100644
--- a/tests/test_instruments_rfsoc.py
+++ b/tests/test_instruments_rfsoc.py
@@ -14,7 +14,7 @@
     convert_units_sweeper,
     replace_pulse_shape,
 )
-from qibolab.pulses import Drag, Gaussian, Pulse, PulseSequence, PulseType, Rectangular
+from qibolab.pulses import Envelopes, Pulse, PulseSequence, PulseType
 from qibolab.qubits import Qubit
 from qibolab.result import (
     AveragedIntegratedResults,
@@ -25,6 +25,10 @@
 
 from .conftest import get_instrument
 
+Rectangular = Envelopes.RECTANGULAR.value
+Gaussian = Envelopes.GAUSSIAN.value
+Drag = Envelopes.DRAG.value
+
 
 def test_convert_default(dummy_qrc):
     """Test convert function raises errors when parameter have wrong types."""
diff --git a/tests/test_sweeper.py b/tests/test_sweeper.py
index b4b660f996..2b0f7908c7 100644
--- a/tests/test_sweeper.py
+++ b/tests/test_sweeper.py
@@ -1,10 +1,12 @@
 import numpy as np
 import pytest
 
-from qibolab.pulses import Pulse, Rectangular
+from qibolab.pulses import Envelopes, Pulse
 from qibolab.qubits import Qubit
 from qibolab.sweeper import Parameter, QubitParameter, Sweeper
 
+Rectangular = Envelopes.RECTANGULAR.value
+
 
 @pytest.mark.parametrize("parameter", Parameter)
 def test_sweeper_pulses(parameter):

From 604abf1703f588bcced72acc24a6a0cde5be63ad Mon Sep 17 00:00:00 2001
From: Alessandro Candido <candido.ale@gmail.com>
Date: Thu, 21 Mar 2024 15:50:10 +0400
Subject: [PATCH 06/22] fix: Propagate Pydantic models to Pulse

---
 src/qibolab/instruments/qm/config.py | 4 +---
 1 file changed, 1 insertion(+), 3 deletions(-)

diff --git a/src/qibolab/instruments/qm/config.py b/src/qibolab/instruments/qm/config.py
index e6ceeca78f..cc934fb202 100644
--- a/src/qibolab/instruments/qm/config.py
+++ b/src/qibolab/instruments/qm/config.py
@@ -4,12 +4,10 @@
 import numpy as np
 from qibo.config import raise_error
 
-from qibolab.pulses import Envelopes, PulseType
+from qibolab.pulses import PulseType, Rectangular
 
 from .ports import OPXIQ, OctaveInput, OctaveOutput, OPXOutput
 
-Rectangular = Envelopes.RECTANGULAR.value
-
 SAMPLING_RATE = 1
 """Sampling rate of Quantum Machines OPX in GSps."""
 

From c9a8ce57ad9dbb9fb432d9cf2fd7d7a47a68fce8 Mon Sep 17 00:00:00 2001
From: Alessandro Candido <candido.ale@gmail.com>
Date: Thu, 21 Mar 2024 19:06:20 +0400
Subject: [PATCH 07/22] fix: Solve import-related issues in tests

---
 tests/test_instruments_qm.py    | 4 +---
 tests/test_instruments_rfsoc.py | 6 +-----
 tests/test_sweeper.py           | 4 +---
 3 files changed, 3 insertions(+), 11 deletions(-)

diff --git a/tests/test_instruments_qm.py b/tests/test_instruments_qm.py
index 6ec5fc455e..c81c627da0 100644
--- a/tests/test_instruments_qm.py
+++ b/tests/test_instruments_qm.py
@@ -9,14 +9,12 @@
 from qibolab.instruments.qm.acquisition import Acquisition, declare_acquisitions
 from qibolab.instruments.qm.controller import controllers_config
 from qibolab.instruments.qm.sequence import BakedPulse, QMPulse, Sequence
-from qibolab.pulses import Envelopes, Pulse, PulseSequence, PulseType
+from qibolab.pulses import Pulse, PulseSequence, PulseType, Rectangular
 from qibolab.qubits import Qubit
 from qibolab.sweeper import Parameter, Sweeper
 
 from .conftest import set_platform_profile
 
-Rectangular = Envelopes.RECTANGULAR.value
-
 
 def test_qmpulse():
     pulse = Pulse(0, 40, 0.05, int(3e9), 0.0, Rectangular(), "ch0", qubit=0)
diff --git a/tests/test_instruments_rfsoc.py b/tests/test_instruments_rfsoc.py
index 1e099e4070..2399ba489b 100644
--- a/tests/test_instruments_rfsoc.py
+++ b/tests/test_instruments_rfsoc.py
@@ -14,7 +14,7 @@
     convert_units_sweeper,
     replace_pulse_shape,
 )
-from qibolab.pulses import Envelopes, Pulse, PulseSequence, PulseType
+from qibolab.pulses import Drag, Gaussian, Pulse, PulseSequence, PulseType, Rectangular
 from qibolab.qubits import Qubit
 from qibolab.result import (
     AveragedIntegratedResults,
@@ -25,10 +25,6 @@
 
 from .conftest import get_instrument
 
-Rectangular = Envelopes.RECTANGULAR.value
-Gaussian = Envelopes.GAUSSIAN.value
-Drag = Envelopes.DRAG.value
-
 
 def test_convert_default(dummy_qrc):
     """Test convert function raises errors when parameter have wrong types."""
diff --git a/tests/test_sweeper.py b/tests/test_sweeper.py
index 2b0f7908c7..b4b660f996 100644
--- a/tests/test_sweeper.py
+++ b/tests/test_sweeper.py
@@ -1,12 +1,10 @@
 import numpy as np
 import pytest
 
-from qibolab.pulses import Envelopes, Pulse
+from qibolab.pulses import Pulse, Rectangular
 from qibolab.qubits import Qubit
 from qibolab.sweeper import Parameter, QubitParameter, Sweeper
 
-Rectangular = Envelopes.RECTANGULAR.value
-
 
 @pytest.mark.parametrize("parameter", Parameter)
 def test_sweeper_pulses(parameter):

From 697d3a0c598ffe7119c002e2715c6ca6c791438e Mon Sep 17 00:00:00 2001
From: Alessandro Candido <candido.ale@gmail.com>
Date: Mon, 8 Apr 2024 12:32:18 +0200
Subject: [PATCH 08/22] fix: Use pydantic to parse pulses, instead of relying
 on manual identification through marker fields

---
 src/qibolab/pulses/pulse.py |  5 ++++-
 src/qibolab/serialize.py    | 26 +++++++++++++++++++-------
 2 files changed, 23 insertions(+), 8 deletions(-)

diff --git a/src/qibolab/pulses/pulse.py b/src/qibolab/pulses/pulse.py
index efd4c7b85c..3c2c59b55e 100644
--- a/src/qibolab/pulses/pulse.py
+++ b/src/qibolab/pulses/pulse.py
@@ -2,7 +2,7 @@
 
 from dataclasses import fields
 from enum import Enum
-from typing import Optional
+from typing import Optional, Union
 
 import numpy as np
 
@@ -146,3 +146,6 @@ class VirtualZ(Model):
     def duration(self):
         """Duration of the virtual gate should always be zero."""
         return 0
+
+
+PulseLike = Union[Pulse, Delay, VirtualZ]
diff --git a/src/qibolab/serialize.py b/src/qibolab/serialize.py
index c9ede67312..e95d029f08 100644
--- a/src/qibolab/serialize.py
+++ b/src/qibolab/serialize.py
@@ -10,6 +10,8 @@
 from pathlib import Path
 from typing import Tuple
 
+from pydantic import ConfigDict, TypeAdapter
+
 from qibolab.couplers import Coupler
 from qibolab.kernels import Kernels
 from qibolab.native import SingleQubitNatives, TwoQubitNatives
@@ -22,6 +24,7 @@
     Settings,
 )
 from qibolab.pulses import Delay, Pulse, PulseSequence, PulseType, VirtualZ
+from qibolab.pulses.pulse import PulseLike
 from qibolab.qubits import Qubit, QubitPair
 
 RUNCARD = "parameters.json"
@@ -88,17 +91,26 @@ def load_qubits(
     return qubits, couplers, pairs
 
 
-def _load_pulse(pulse_kwargs, qubit):
+_PulseLike = TypeAdapter(PulseLike, config=ConfigDict(extra="ignore"))
+"""Parse a pulse-like object.
+
+.. note::
+
+    Extra arguments are ignored, in order to standardize the qubit handling, since the
+    :cls:`Delay` object has no `qubit` field.
+    This will be removed once there won't be any need for dedicated couplers handling.
+"""
+
+
+def _load_pulse(pulse_kwargs: dict, qubit: Qubit):
     coupler = "coupler" in pulse_kwargs
-    q = pulse_kwargs.pop("coupler" if coupler else "qubit", qubit.name)
+    pulse_kwargs["qubit"] = pulse_kwargs.pop(
+        "coupler" if coupler else "qubit", qubit.name
+    )
 
-    if "phase" in pulse_kwargs:
-        return VirtualZ(**pulse_kwargs, qubit=q)
-    if "amplitude" not in pulse_kwargs:
-        return Delay(**pulse_kwargs)
     if "frequency" not in pulse_kwargs:
         return Pulse.flux(**pulse_kwargs, qubit=q)
-    return Pulse(**pulse_kwargs, qubit=q)
+    return _PulseLike.validate_python(pulse_kwargs)
 
 
 def _load_single_qubit_natives(qubit, gates) -> SingleQubitNatives:

From 6b9b8c6d0b46a51a1a3eaf0deeb982320df945db Mon Sep 17 00:00:00 2001
From: Alessandro Candido <candido.ale@gmail.com>
Date: Mon, 8 Apr 2024 12:35:47 +0200
Subject: [PATCH 09/22] fix: Subclass pulse for automated flux recognition

---
 src/qibolab/pulses/pulse.py | 8 +++++++-
 src/qibolab/serialize.py    | 2 --
 2 files changed, 7 insertions(+), 3 deletions(-)

diff --git a/src/qibolab/pulses/pulse.py b/src/qibolab/pulses/pulse.py
index 3c2c59b55e..cf93156e96 100644
--- a/src/qibolab/pulses/pulse.py
+++ b/src/qibolab/pulses/pulse.py
@@ -119,6 +119,12 @@ def __hash__(self):
         )
 
 
+class FluxPulse(Pulse):
+    frequency: float = 0.0
+    relative_phase: float = 0.0
+    type: PulseType = PulseType.FLUX
+
+
 class Delay(Model):
     """A wait instruction during which we are not sending any pulses to the
     QPU."""
@@ -148,4 +154,4 @@ def duration(self):
         return 0
 
 
-PulseLike = Union[Pulse, Delay, VirtualZ]
+PulseLike = Union[Pulse, FluxPulse, Delay, VirtualZ]
diff --git a/src/qibolab/serialize.py b/src/qibolab/serialize.py
index e95d029f08..652689c205 100644
--- a/src/qibolab/serialize.py
+++ b/src/qibolab/serialize.py
@@ -108,8 +108,6 @@ def _load_pulse(pulse_kwargs: dict, qubit: Qubit):
         "coupler" if coupler else "qubit", qubit.name
     )
 
-    if "frequency" not in pulse_kwargs:
-        return Pulse.flux(**pulse_kwargs, qubit=q)
     return _PulseLike.validate_python(pulse_kwargs)
 
 

From 80f7f7f46aa266da8c30f545853190738e116cc5 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 8 Apr 2024 10:38:47 +0000
Subject: [PATCH 10/22] [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
---
 src/qibolab/serialize.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/qibolab/serialize.py b/src/qibolab/serialize.py
index 652689c205..84b3175963 100644
--- a/src/qibolab/serialize.py
+++ b/src/qibolab/serialize.py
@@ -23,7 +23,7 @@
     QubitPairMap,
     Settings,
 )
-from qibolab.pulses import Delay, Pulse, PulseSequence, PulseType, VirtualZ
+from qibolab.pulses import Pulse, PulseSequence, PulseType
 from qibolab.pulses.pulse import PulseLike
 from qibolab.qubits import Qubit, QubitPair
 

From d614660bdeecfba74430131704603d08cdb92d0c Mon Sep 17 00:00:00 2001
From: Alessandro Candido <candido.ale@gmail.com>
Date: Tue, 25 Jun 2024 18:59:01 +0200
Subject: [PATCH 11/22] fix: Rebase leftover

Sorry, it seems like I made some mess...
---
 flake.nix                                     |  2 +-
 .../instruments/qblox/cluster_qrm_rf.py       | 12 +++++------
 tests/test_compilers_default.py               |  6 +++---
 tests/test_instruments_qm.py                  | 21 -------------------
 4 files changed, 10 insertions(+), 31 deletions(-)

diff --git a/flake.nix b/flake.nix
index 478c524c95..9b2c037a89 100644
--- a/flake.nix
+++ b/flake.nix
@@ -49,7 +49,7 @@
               config,
               ...
             }: {
-              packages = with pkgs; [pre-commit poethepoet jupyter stdenv.cc.cc.lib zlib];
+              packages = with pkgs; [pre-commit poethepoet jupyter zlib];
 
               env = {
                 QIBOLAB_PLATFORMS = (dirOf config.env.DEVENV_ROOT) + "/qibolab_platforms_qrc";
diff --git a/src/qibolab/instruments/qblox/cluster_qrm_rf.py b/src/qibolab/instruments/qblox/cluster_qrm_rf.py
index d09905eeb6..9d582e8598 100644
--- a/src/qibolab/instruments/qblox/cluster_qrm_rf.py
+++ b/src/qibolab/instruments/qblox/cluster_qrm_rf.py
@@ -993,9 +993,9 @@ def acquire(self):
                     if len(sequencer.pulses.ro_pulses) == 1:
                         pulse = sequencer.pulses.ro_pulses[0]
                         frequency = self.get_if(pulse)
-                        acquisitions[pulse.qubit] = acquisitions[
-                            pulse.id
-                        ] = AveragedAcquisition(scope, duration, frequency)
+                        acquisitions[pulse.qubit] = acquisitions[pulse.id] = (
+                            AveragedAcquisition(scope, duration, frequency)
+                        )
                     else:
                         raise RuntimeError(
                             "Software Demodulation only supports one acquisition per channel. "
@@ -1005,9 +1005,9 @@ def acquire(self):
                     results = self.device.get_acquisitions(sequencer.number)
                     for pulse in sequencer.pulses.ro_pulses:
                         bins = results[pulse.id]["acquisition"]["bins"]
-                        acquisitions[pulse.qubit] = acquisitions[
-                            pulse.id
-                        ] = DemodulatedAcquisition(scope, bins, duration)
+                        acquisitions[pulse.qubit] = acquisitions[pulse.id] = (
+                            DemodulatedAcquisition(scope, bins, duration)
+                        )
 
         # TODO: to be updated once the functionality of ExecutionResults is extended
         return {key: acquisition for key, acquisition in acquisitions.items()}
diff --git a/tests/test_compilers_default.py b/tests/test_compilers_default.py
index ff674a5462..945f098c87 100644
--- a/tests/test_compilers_default.py
+++ b/tests/test_compilers_default.py
@@ -37,7 +37,7 @@ def compile_circuit(circuit, platform):
 
 
 @pytest.mark.parametrize(
-    "gateargs",
+    "gateargs,sequence_len",
     [
         ((gates.I,), 1),
         ((gates.Z,), 2),
@@ -47,11 +47,11 @@ def compile_circuit(circuit, platform):
         ((gates.U3, 0.1, 0.2, 0.3), 10),
     ],
 )
-def test_compile(platform, gateargs):
+def test_compile(platform, gateargs, sequence_len):
     nqubits = platform.nqubits
     circuit = generate_circuit_with_gate(nqubits, *gateargs)
     sequence = compile_circuit(circuit, platform)
-    assert len(sequence) == nqubits * nseq
+    assert len(sequence) == nqubits * sequence_len
 
 
 def test_compile_two_gates(platform):
diff --git a/tests/test_instruments_qm.py b/tests/test_instruments_qm.py
index c81c627da0..62b3ef994b 100644
--- a/tests/test_instruments_qm.py
+++ b/tests/test_instruments_qm.py
@@ -346,21 +346,8 @@ def test_qm_register_pulse(qmplatform, pulse_type, qubit):
             },
         }
 
-<<<<<<< HEAD
     controller.config.register_element(
         platform.qubits[qubit], pulse, controller.time_of_flight, controller.smearing
-=======
-    opx.config.register_element(
-        platform.qubits[qubit], pulse, opx.time_of_flight, opx.smearing
-    )
-    opx.config.register_pulse(platform.qubits[qubit], pulse)
-    assert opx.config.pulses[str(pulse.id)] == target_pulse
-    assert target_pulse["waveforms"]["I"] in opx.config.waveforms
-    assert target_pulse["waveforms"]["Q"] in opx.config.waveforms
-    assert (
-        opx.config.elements[f"{pulse_type}{qubit}"]["operations"][str(pulse.id)]
-        == pulse.id
->>>>>>> 5f1fb614 (Fix QM issues by stringifying pulses ID)
     )
     qmpulse = QMPulse(pulse)
     controller.config.register_pulse(platform.qubits[qubit], qmpulse)
@@ -386,19 +373,11 @@ def test_qm_register_flux_pulse(qmplatform):
         "length": pulse.duration,
         "waveforms": {"single": "constant_wf0.005"},
     }
-<<<<<<< HEAD
     qmpulse = QMPulse(pulse)
     controller.config.register_element(platform.qubits[qubit], pulse)
     controller.config.register_pulse(platform.qubits[qubit], qmpulse)
     assert controller.config.pulses[qmpulse.operation] == target_pulse
     assert target_pulse["waveforms"]["single"] in controller.config.waveforms
-=======
-    opx.config.register_element(platform.qubits[qubit], pulse)
-    opx.config.register_pulse(platform.qubits[qubit], pulse)
-    assert opx.config.pulses[str(pulse.id)] == target_pulse
-    assert target_pulse["waveforms"]["single"] in opx.config.waveforms
-    assert opx.config.elements[f"flux{qubit}"]["operations"][str(pulse.id)] == pulse.id
->>>>>>> 5f1fb614 (Fix QM issues by stringifying pulses ID)
 
 
 def test_qm_register_pulses_with_different_frequencies(qmplatform):

From af9bb1801ee5e1590fe2a757fca3bd3bfe33cc82 Mon Sep 17 00:00:00 2001
From: Alessandro Candido <candido.ale@gmail.com>
Date: Tue, 25 Jun 2024 19:02:09 +0200
Subject: [PATCH 12/22] chore: Poetry lock

---
 poetry.lock | 1037 ++++++++++++++++++++++++++-------------------------
 1 file changed, 520 insertions(+), 517 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index 44aadec062..d98e36153e 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,4 +1,4 @@
-# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand.
+# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand.
 
 [[package]]
 name = "alabaster"
@@ -13,13 +13,13 @@ files = [
 
 [[package]]
 name = "annotated-types"
-version = "0.6.0"
+version = "0.7.0"
 description = "Reusable constraint types to use with typing.Annotated"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "annotated_types-0.6.0-py3-none-any.whl", hash = "sha256:0641064de18ba7a25dee8f96403ebc39113d0cb953a01429249d5c7564666a43"},
-    {file = "annotated_types-0.6.0.tar.gz", hash = "sha256:563339e807e53ffd9c267e99fc6d9ea23eb8443c08f112651963e24e22f84a5d"},
+    {file = "annotated_types-0.7.0-py3-none-any.whl", hash = "sha256:1f02e8b43a8fbbc3f3e0d4f0f4bfc8131bcb4eebe8849b8e5c773f3a1c582a53"},
+    {file = "annotated_types-0.7.0.tar.gz", hash = "sha256:aff07c09a53a08bc8cfccb9c85b05f1aa9a2a6f23728d790723543408344ce89"},
 ]
 
 [[package]]
@@ -35,13 +35,13 @@ files = [
 
 [[package]]
 name = "anyio"
-version = "4.3.0"
+version = "4.4.0"
 description = "High level compatibility layer for multiple asynchronous event loop implementations"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "anyio-4.3.0-py3-none-any.whl", hash = "sha256:048e05d0f6caeed70d731f3db756d35dcc1f35747c8c403364a8332c630441b8"},
-    {file = "anyio-4.3.0.tar.gz", hash = "sha256:f75253795a87df48568485fd18cdd2a3fa5c4f7c5be8e5e36637733fce06fed6"},
+    {file = "anyio-4.4.0-py3-none-any.whl", hash = "sha256:c1b2d8f46a8a812513012e1107cb0e68c17159a7a594208005a57dc776e1bdc7"},
+    {file = "anyio-4.4.0.tar.gz", hash = "sha256:5aadc6a1bbb7cdb0bede386cac5e2940f5e2ff3aa20277e991cf028e0585ce94"},
 ]
 
 [package.dependencies]
@@ -122,13 +122,13 @@ tests-no-zope = ["attrs[tests-mypy]", "cloudpickle", "hypothesis", "pympler", "p
 
 [[package]]
 name = "azure-core"
-version = "1.30.1"
+version = "1.30.2"
 description = "Microsoft Azure Core Library for Python"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "azure-core-1.30.1.tar.gz", hash = "sha256:26273a254131f84269e8ea4464f3560c731f29c0c1f69ac99010845f239c1a8f"},
-    {file = "azure_core-1.30.1-py3-none-any.whl", hash = "sha256:7c5ee397e48f281ec4dd773d67a0a47a0962ed6fa833036057f9ea067f688e74"},
+    {file = "azure-core-1.30.2.tar.gz", hash = "sha256:a14dc210efcd608821aa472d9fb8e8d035d29b68993819147bc290a8ac224472"},
+    {file = "azure_core-1.30.2-py3-none-any.whl", hash = "sha256:cf019c1ca832e96274ae85abd3d9f752397194d9fea3b41487290562ac8abe4a"},
 ]
 
 [package.dependencies]
@@ -141,13 +141,13 @@ aio = ["aiohttp (>=3.0)"]
 
 [[package]]
 name = "azure-identity"
-version = "1.16.0"
+version = "1.17.1"
 description = "Microsoft Azure Identity Library for Python"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "azure-identity-1.16.0.tar.gz", hash = "sha256:6ff1d667cdcd81da1ceab42f80a0be63ca846629f518a922f7317a7e3c844e1b"},
-    {file = "azure_identity-1.16.0-py3-none-any.whl", hash = "sha256:722fdb60b8fdd55fa44dc378b8072f4b419b56a5e54c0de391f644949f3a826f"},
+    {file = "azure-identity-1.17.1.tar.gz", hash = "sha256:32ecc67cc73f4bd0595e4f64b1ca65cd05186f4fe6f98ed2ae9f1aa32646efea"},
+    {file = "azure_identity-1.17.1-py3-none-any.whl", hash = "sha256:db8d59c183b680e763722bfe8ebc45930e6c57df510620985939f7f3191e0382"},
 ]
 
 [package.dependencies]
@@ -155,6 +155,7 @@ azure-core = ">=1.23.0"
 cryptography = ">=2.5"
 msal = ">=1.24.0"
 msal-extensions = ">=0.3.0"
+typing-extensions = ">=4.0.0"
 
 [[package]]
 name = "babel"
@@ -290,13 +291,13 @@ files = [
 
 [[package]]
 name = "certifi"
-version = "2024.2.2"
+version = "2024.6.2"
 description = "Python package for providing Mozilla's CA Bundle."
 optional = false
 python-versions = ">=3.6"
 files = [
-    {file = "certifi-2024.2.2-py3-none-any.whl", hash = "sha256:dc383c07b76109f368f6106eee2b593b04a011ea4d55f652c6ca24a754d1cdd1"},
-    {file = "certifi-2024.2.2.tar.gz", hash = "sha256:0569859f95fc761b18b45ef421b1290a0f65f147e92a1e5eb3e635f9a5e4e66f"},
+    {file = "certifi-2024.6.2-py3-none-any.whl", hash = "sha256:ddc6c8ce995e6987e7faf5e3f1b02b302836a0e5d98ece18392cb1a36c72ad56"},
+    {file = "certifi-2024.6.2.tar.gz", hash = "sha256:3cd43f1c6fa7dedc5899d69d3ad0398fd018ad1a17fba83ddaf78aa46c747516"},
 ]
 
 [[package]]
@@ -612,63 +613,63 @@ test-no-images = ["pytest", "pytest-cov", "pytest-xdist", "wurlitzer"]
 
 [[package]]
 name = "coverage"
-version = "7.5.1"
+version = "7.5.4"
 description = "Code coverage measurement for Python"
 optional = false
 python-versions = ">=3.8"
 files = [
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-    {file = "coverage-7.5.1-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:39afcd3d4339329c5f58de48a52f6e4e50f6578dd6099961cf22228feb25f38f"},
-    {file = "coverage-7.5.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:4a7b0ceee8147444347da6a66be737c9d78f3353b0681715b668b72e79203e4a"},
-    {file = "coverage-7.5.1-cp310-cp310-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:4a9ca3f2fae0088c3c71d743d85404cec8df9be818a005ea065495bedc33da35"},
-    {file = "coverage-7.5.1-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:5fd215c0c7d7aab005221608a3c2b46f58c0285a819565887ee0b718c052aa4e"},
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 [package.dependencies]
@@ -679,43 +680,43 @@ toml = ["tomli"]
 
 [[package]]
 name = "cryptography"
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 description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers."
 optional = false
 python-versions = ">=3.7"
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@@ -748,13 +749,13 @@ tests = ["pytest", "pytest-cov", "pytest-xdist"]
 
 [[package]]
 name = "dash"
-version = "2.17.0"
+version = "2.17.1"
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 python-versions = ">=3.8"
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 [package.dependencies]
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 [package.extras]
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 [[package]]
 name = "dash-bootstrap-components"
@@ -855,13 +856,13 @@ files = [
 
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+version = "2.25.0"
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 optional = false
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 [[package]]
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 python-versions = "*"
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@@ -1211,20 +1212,20 @@ files = [
 
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+version = "2.19.1"
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@@ -1234,13 +1235,13 @@ grpcio-gcp = ["grpcio-gcp (>=0.2.2,<1.0.dev0)"]
 
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 [package.extras]
-protobuf = ["grpcio-tools (>=1.63.0)"]
+protobuf = ["grpcio-tools (>=1.64.1)"]
 
 [[package]]
 name = "grpclib"
@@ -1553,22 +1554,22 @@ files = [
 
 [[package]]
 name = "importlib-metadata"
-version = "7.1.0"
+version = "7.2.1"
 description = "Read metadata from Python packages"
 optional = false
 python-versions = ">=3.8"
 files = [
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 [package.dependencies]
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 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
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 perf = ["ipython"]
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 [[package]]
 name = "importlib-resources"
@@ -1651,21 +1652,21 @@ test-extra = ["curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.22)", "pa
 
 [[package]]
 name = "ipywidgets"
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 description = "Jupyter interactive widgets"
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 [package.dependencies]
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 ipython = ">=6.1.0"
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 traitlets = ">=4.3.1"
-widgetsnbextension = ">=4.0.10,<4.1.0"
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 [package.extras]
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@@ -1790,13 +1791,13 @@ referencing = ">=0.31.0"
 
 [[package]]
 name = "jupyter-client"
-version = "8.6.1"
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 description = "Jupyter protocol implementation and client libraries"
 optional = false
 python-versions = ">=3.8"
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 [package.dependencies]
@@ -1809,7 +1810,7 @@ traitlets = ">=5.3"
 
 [package.extras]
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 [[package]]
 name = "jupyter-core"
@@ -1844,13 +1845,13 @@ files = [
 
 [[package]]
 name = "jupyterlab-widgets"
-version = "3.0.10"
+version = "3.0.11"
 description = "Jupyter interactive widgets for JupyterLab"
 optional = false
 python-versions = ">=3.7"
 files = [
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 ]
 
 [[package]]
@@ -2357,41 +2358,37 @@ tests = ["pytest (>=4.6)"]
 
 [[package]]
 name = "msal"
-version = "1.28.0"
+version = "1.29.0"
 description = "The Microsoft Authentication Library (MSAL) for Python library enables your app to access the Microsoft Cloud by supporting authentication of users with Microsoft Azure Active Directory accounts (AAD) and Microsoft Accounts (MSA) using industry standard OAuth2 and OpenID Connect."
 optional = false
 python-versions = ">=3.7"
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 ]
 
 [package.dependencies]
-cryptography = ">=0.6,<45"
+cryptography = ">=2.5,<45"
 PyJWT = {version = ">=1.0.0,<3", extras = ["crypto"]}
 requests = ">=2.0.0,<3"
 
 [package.extras]
-broker = ["pymsalruntime (>=0.13.2,<0.15)"]
+broker = ["pymsalruntime (>=0.13.2,<0.17)"]
 
 [[package]]
 name = "msal-extensions"
-version = "1.1.0"
+version = "1.2.0"
 description = "Microsoft Authentication Library extensions (MSAL EX) provides a persistence API that can save your data on disk, encrypted on Windows, macOS and Linux. Concurrent data access will be coordinated by a file lock mechanism."
 optional = false
 python-versions = ">=3.7"
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-    {version = ">=1.6,<3", markers = "platform_system == \"Windows\""},
-]
+msal = ">=1.29,<2"
+portalocker = ">=1.4,<3"
 
 [[package]]
 name = "multidict"
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 ]
 
 [[package]]
 name = "packaging"
-version = "24.0"
+version = "24.1"
 description = "Core utilities for Python packages"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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 [[package]]
@@ -2825,6 +2822,7 @@ optional = false
 python-versions = ">=3.9"
 files = [
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@@ -2838,12 +2836,14 @@ files = [
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@@ -3080,13 +3080,13 @@ testing = ["pytest", "pytest-benchmark"]
 
 [[package]]
 name = "portalocker"
-version = "2.8.2"
+version = "2.10.0"
 description = "Wraps the portalocker recipe for easy usage"
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [package.dependencies]
@@ -3099,13 +3099,13 @@ tests = ["pytest (>=5.4.1)", "pytest-cov (>=2.8.1)", "pytest-mypy (>=0.8.0)", "p
 
 [[package]]
 name = "prompt-toolkit"
-version = "3.0.43"
+version = "3.0.47"
 description = "Library for building powerful interactive command lines in Python"
 optional = false
 python-versions = ">=3.7.0"
 files = [
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 ]
 
 [package.dependencies]
@@ -3113,20 +3113,20 @@ wcwidth = "*"
 
 [[package]]
 name = "proto-plus"
-version = "1.23.0"
+version = "1.24.0"
 description = "Beautiful, Pythonic protocol buffers."
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 files = [
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 ]
 
 [package.dependencies]
-protobuf = ">=3.19.0,<5.0.0dev"
+protobuf = ">=3.19.0,<6.0.0dev"
 
 [package.extras]
-testing = ["google-api-core[grpc] (>=1.31.5)"]
+testing = ["google-api-core (>=1.31.5)"]
 
 [[package]]
 name = "protobuf"
@@ -3181,27 +3181,28 @@ files = [
 
 [[package]]
 name = "psutil"
-version = "5.9.8"
+version = "6.0.0"
 description = "Cross-platform lib for process and system monitoring in Python."
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
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 ]
 
 [package.extras]
@@ -3525,18 +3526,18 @@ files = [
 
 [[package]]
 name = "pydantic"
-version = "2.7.1"
+version = "2.7.4"
 description = "Data validation using Python type hints"
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [package.dependencies]
 annotated-types = ">=0.4.0"
-pydantic-core = "2.18.2"
+pydantic-core = "2.18.4"
 typing-extensions = ">=4.6.1"
 
 [package.extras]
@@ -3544,90 +3545,90 @@ email = ["email-validator (>=2.0.0)"]
 
 [[package]]
 name = "pydantic-core"
-version = "2.18.2"
+version = "2.18.4"
 description = "Core functionality for Pydantic validation and serialization"
 optional = false
 python-versions = ">=3.8"
 files = [
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 [package.extras]
@@ -4486,13 +4490,13 @@ rpds-py = ">=0.7.0"
 
 [[package]]
 name = "requests"
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+version = "2.32.3"
 description = "Python HTTP for Humans."
 optional = false
-python-versions = ">=3.7"
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 [package.dependencies]
@@ -4766,45 +4770,48 @@ files = [
 
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 [package.dependencies]
 joblib = ">=1.2.0"
 numpy = ">=1.19.5"
 scipy = ">=1.6.0"
-threadpoolctl = ">=2.0.0"
+threadpoolctl = ">=3.1.0"
 
 [package.extras]
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 [[package]]
 name = "scipy"
@@ -4850,19 +4857,18 @@ test = ["asv", "gmpy2", "hypothesis", "mpmath", "pooch", "pytest", "pytest-cov",
 
 [[package]]
 name = "setuptools"
-version = "69.5.1"
+version = "70.1.1"
 description = "Easily download, build, install, upgrade, and uninstall Python packages"
 optional = false
 python-versions = ">=3.8"
 files = [
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 [package.extras]
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 [[package]]
 name = "six"
@@ -5175,17 +5181,17 @@ tests = ["cython", "littleutils", "pygments", "pytest", "typeguard"]
 
 [[package]]
 name = "sympy"
-version = "1.12"
+version = "1.12.1"
 description = "Computer algebra system (CAS) in Python"
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [package.dependencies]
-mpmath = ">=0.19"
+mpmath = ">=1.1.0,<1.4.0"
 
 [[package]]
 name = "tabulate"
@@ -5203,13 +5209,13 @@ widechars = ["wcwidth"]
 
 [[package]]
 name = "tenacity"
-version = "8.3.0"
+version = "8.4.2"
 description = "Retry code until it succeeds"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "tenacity-8.3.0-py3-none-any.whl", hash = "sha256:3649f6443dbc0d9b01b9d8020a9c4ec7a1ff5f6f3c6c8a036ef371f573fe9185"},
-    {file = "tenacity-8.3.0.tar.gz", hash = "sha256:953d4e6ad24357bceffbc9707bc74349aca9d245f68eb65419cf0c249a1949a2"},
+    {file = "tenacity-8.4.2-py3-none-any.whl", hash = "sha256:9e6f7cf7da729125c7437222f8a522279751cdfbe6b67bfe64f75d3a348661b2"},
+    {file = "tenacity-8.4.2.tar.gz", hash = "sha256:cd80a53a79336edba8489e767f729e4f391c896956b57140b5d7511a64bbd3ef"},
 ]
 
 [package.extras]
@@ -5280,22 +5286,22 @@ files = [
 
 [[package]]
 name = "tornado"
-version = "6.4"
+version = "6.4.1"
 description = "Tornado is a Python web framework and asynchronous networking library, originally developed at FriendFeed."
 optional = false
-python-versions = ">= 3.8"
+python-versions = ">=3.8"
 files = [
-    {file = "tornado-6.4-cp38-abi3-macosx_10_9_universal2.whl", hash = "sha256:02ccefc7d8211e5a7f9e8bc3f9e5b0ad6262ba2fbb683a6443ecc804e5224ce0"},
-    {file = "tornado-6.4-cp38-abi3-macosx_10_9_x86_64.whl", hash = "sha256:27787de946a9cffd63ce5814c33f734c627a87072ec7eed71f7fc4417bb16263"},
-    {file = "tornado-6.4-cp38-abi3-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:f7894c581ecdcf91666a0912f18ce5e757213999e183ebfc2c3fdbf4d5bd764e"},
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-    {file = "tornado-6.4-cp38-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:f0251554cdd50b4b44362f73ad5ba7126fc5b2c2895cc62b14a1c2d7ea32f212"},
-    {file = "tornado-6.4-cp38-abi3-musllinux_1_1_aarch64.whl", hash = "sha256:fd03192e287fbd0899dd8f81c6fb9cbbc69194d2074b38f384cb6fa72b80e9c2"},
-    {file = "tornado-6.4-cp38-abi3-musllinux_1_1_i686.whl", hash = "sha256:88b84956273fbd73420e6d4b8d5ccbe913c65d31351b4c004ae362eba06e1f78"},
-    {file = "tornado-6.4-cp38-abi3-musllinux_1_1_x86_64.whl", hash = "sha256:71ddfc23a0e03ef2df1c1397d859868d158c8276a0603b96cf86892bff58149f"},
-    {file = "tornado-6.4-cp38-abi3-win32.whl", hash = "sha256:6f8a6c77900f5ae93d8b4ae1196472d0ccc2775cc1dfdc9e7727889145c45052"},
-    {file = "tornado-6.4-cp38-abi3-win_amd64.whl", hash = "sha256:10aeaa8006333433da48dec9fe417877f8bcc21f48dda8d661ae79da357b2a63"},
-    {file = "tornado-6.4.tar.gz", hash = "sha256:72291fa6e6bc84e626589f1c29d90a5a6d593ef5ae68052ee2ef000dfd273dee"},
+    {file = "tornado-6.4.1-cp38-abi3-macosx_10_9_universal2.whl", hash = "sha256:163b0aafc8e23d8cdc3c9dfb24c5368af84a81e3364745ccb4427669bf84aec8"},
+    {file = "tornado-6.4.1-cp38-abi3-macosx_10_9_x86_64.whl", hash = "sha256:6d5ce3437e18a2b66fbadb183c1d3364fb03f2be71299e7d10dbeeb69f4b2a14"},
+    {file = "tornado-6.4.1-cp38-abi3-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:e2e20b9113cd7293f164dc46fffb13535266e713cdb87bd2d15ddb336e96cfc4"},
+    {file = "tornado-6.4.1-cp38-abi3-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:8ae50a504a740365267b2a8d1a90c9fbc86b780a39170feca9bcc1787ff80842"},
+    {file = "tornado-6.4.1-cp38-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:613bf4ddf5c7a95509218b149b555621497a6cc0d46ac341b30bd9ec19eac7f3"},
+    {file = "tornado-6.4.1-cp38-abi3-musllinux_1_2_aarch64.whl", hash = "sha256:25486eb223babe3eed4b8aecbac33b37e3dd6d776bc730ca14e1bf93888b979f"},
+    {file = "tornado-6.4.1-cp38-abi3-musllinux_1_2_i686.whl", hash = "sha256:454db8a7ecfcf2ff6042dde58404164d969b6f5d58b926da15e6b23817950fc4"},
+    {file = "tornado-6.4.1-cp38-abi3-musllinux_1_2_x86_64.whl", hash = "sha256:a02a08cc7a9314b006f653ce40483b9b3c12cda222d6a46d4ac63bb6c9057698"},
+    {file = "tornado-6.4.1-cp38-abi3-win32.whl", hash = "sha256:d9a566c40b89757c9aa8e6f032bcdb8ca8795d7c1a9762910c722b1635c9de4d"},
+    {file = "tornado-6.4.1-cp38-abi3-win_amd64.whl", hash = "sha256:b24b8982ed444378d7f21d563f4180a2de31ced9d8d84443907a0a64da2072e7"},
+    {file = "tornado-6.4.1.tar.gz", hash = "sha256:92d3ab53183d8c50f8204a51e6f91d18a15d5ef261e84d452800d4ff6fc504e9"},
 ]
 
 [[package]]
@@ -5335,13 +5341,13 @@ test = ["argcomplete (>=3.0.3)", "mypy (>=1.7.0)", "pre-commit", "pytest (>=7.0,
 
 [[package]]
 name = "typing-extensions"
-version = "4.11.0"
+version = "4.12.2"
 description = "Backported and Experimental Type Hints for Python 3.8+"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "typing_extensions-4.11.0-py3-none-any.whl", hash = "sha256:c1f94d72897edaf4ce775bb7558d5b79d8126906a14ea5ed1635921406c0387a"},
-    {file = "typing_extensions-4.11.0.tar.gz", hash = "sha256:83f085bd5ca59c80295fc2a82ab5dac679cbe02b9f33f7d83af68e241bea51b0"},
+    {file = "typing_extensions-4.12.2-py3-none-any.whl", hash = "sha256:04e5ca0351e0f3f85c6853954072df659d0d13fac324d0072316b67d7794700d"},
+    {file = "typing_extensions-4.12.2.tar.gz", hash = "sha256:1a7ead55c7e559dd4dee8856e3a88b41225abfe1ce8df57b7c13915fe121ffb8"},
 ]
 
 [[package]]
@@ -5357,23 +5363,20 @@ files = [
 
 [[package]]
 name = "uncertainties"
-version = "3.1.7"
-description = "Transparent calculations with uncertainties on the quantities involved (aka error propagation); fast calculation of derivatives"
+version = "3.2.1"
+description = "calculations with values with uncertainties, error propagation"
 optional = false
-python-versions = "*"
+python-versions = ">=3.8"
 files = [
-    {file = "uncertainties-3.1.7-py2.py3-none-any.whl", hash = "sha256:4040ec64d298215531922a68fa1506dc6b1cb86cd7cca8eca848fcfe0f987151"},
-    {file = "uncertainties-3.1.7.tar.gz", hash = "sha256:80111e0839f239c5b233cb4772017b483a0b7a1573a581b92ab7746a35e6faab"},
+    {file = "uncertainties-3.2.1-py3-none-any.whl", hash = "sha256:80dea7f0c2fe37c9de6893b2352311b5f332be60060cbd6387f88050f7ec345d"},
+    {file = "uncertainties-3.2.1.tar.gz", hash = "sha256:b05417b58bdef236c20e711fb2fee18e4db7348a92edcec01318b32aab34925e"},
 ]
 
-[package.dependencies]
-future = "*"
-
 [package.extras]
-all = ["nose", "numpy", "sphinx"]
-docs = ["sphinx"]
-optional = ["numpy"]
-tests = ["nose", "numpy"]
+all = ["uncertainties[arrays,doc,test]"]
+arrays = ["numpy"]
+doc = ["python-docs-theme", "sphinx", "sphinx-copybutton"]
+test = ["pytest", "pytest-cov"]
 
 [[package]]
 name = "unsync"
@@ -5387,13 +5390,13 @@ files = [
 
 [[package]]
 name = "urllib3"
-version = "2.2.1"
+version = "2.2.2"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "urllib3-2.2.1-py3-none-any.whl", hash = "sha256:450b20ec296a467077128bff42b73080516e71b56ff59a60a02bef2232c4fa9d"},
-    {file = "urllib3-2.2.1.tar.gz", hash = "sha256:d0570876c61ab9e520d776c38acbbb5b05a776d3f9ff98a5c8fd5162a444cf19"},
+    {file = "urllib3-2.2.2-py3-none-any.whl", hash = "sha256:a448b2f64d686155468037e1ace9f2d2199776e17f0a46610480d311f73e3472"},
+    {file = "urllib3-2.2.2.tar.gz", hash = "sha256:dd505485549a7a552833da5e6063639d0d177c04f23bc3864e41e5dc5f612168"},
 ]
 
 [package.extras]
@@ -5555,13 +5558,13 @@ watchdog = ["watchdog (>=2.3)"]
 
 [[package]]
 name = "widgetsnbextension"
-version = "4.0.10"
+version = "4.0.11"
 description = "Jupyter interactive widgets for Jupyter Notebook"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "widgetsnbextension-4.0.10-py3-none-any.whl", hash = "sha256:d37c3724ec32d8c48400a435ecfa7d3e259995201fbefa37163124a9fcb393cc"},
-    {file = "widgetsnbextension-4.0.10.tar.gz", hash = "sha256:64196c5ff3b9a9183a8e699a4227fb0b7002f252c814098e66c4d1cd0644688f"},
+    {file = "widgetsnbextension-4.0.11-py3-none-any.whl", hash = "sha256:55d4d6949d100e0d08b94948a42efc3ed6dfdc0e9468b2c4b128c9a2ce3a7a36"},
+    {file = "widgetsnbextension-4.0.11.tar.gz", hash = "sha256:8b22a8f1910bfd188e596fe7fc05dcbd87e810c8a4ba010bdb3da86637398474"},
 ]
 
 [[package]]
@@ -5662,13 +5665,13 @@ files = [
 
 [[package]]
 name = "xarray"
-version = "2024.5.0"
+version = "2024.6.0"
 description = "N-D labeled arrays and datasets in Python"
 optional = false
 python-versions = ">=3.9"
 files = [
-    {file = "xarray-2024.5.0-py3-none-any.whl", hash = "sha256:7ddedfe2294a0ab00f02d0fbdcb9c6300ec589f3cf436a9c7b7b577a12cd9bcf"},
-    {file = "xarray-2024.5.0.tar.gz", hash = "sha256:e0eb1cb265f265126795f388ed9591f3c752f2aca491f6c0576711fd15b708f2"},
+    {file = "xarray-2024.6.0-py3-none-any.whl", hash = "sha256:721a7394e8ec3d592b2d8ebe21eed074ac077dc1bb1bd777ce00e41700b4866c"},
+    {file = "xarray-2024.6.0.tar.gz", hash = "sha256:0b91e0bc4dc0296947947640fe31ec6e867ce258d2f7cbc10bedf4a6d68340c7"},
 ]
 
 [package.dependencies]
@@ -5774,18 +5777,18 @@ zhinst-timing-models = "*"
 
 [[package]]
 name = "zipp"
-version = "3.18.2"
+version = "3.19.2"
 description = "Backport of pathlib-compatible object wrapper for zip files"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "zipp-3.18.2-py3-none-any.whl", hash = "sha256:dce197b859eb796242b0622af1b8beb0a722d52aa2f57133ead08edd5bf5374e"},
-    {file = "zipp-3.18.2.tar.gz", hash = "sha256:6278d9ddbcfb1f1089a88fde84481528b07b0e10474e09dcfe53dad4069fa059"},
+    {file = "zipp-3.19.2-py3-none-any.whl", hash = "sha256:f091755f667055f2d02b32c53771a7a6c8b47e1fdbc4b72a8b9072b3eef8015c"},
+    {file = "zipp-3.19.2.tar.gz", hash = "sha256:bf1dcf6450f873a13e952a29504887c89e6de7506209e5b1bcc3460135d4de19"},
 ]
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
-testing = ["big-O", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more-itertools", "pytest (>=6,!=8.1.*)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"]
+doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+test = ["big-O", "importlib-resources", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more-itertools", "pytest (>=6,!=8.1.*)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"]
 
 [extras]
 emulator = ["qutip", "scipy"]
@@ -5798,4 +5801,4 @@ zh = ["laboneq"]
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.9,<3.12"
-content-hash = "2e9555b32f971566f63c0505cb15a651f0dabd88ce630a265e96bc27cf250f6e"
+content-hash = "e5a3a7b24638f1fbd6098e6003bc7e2e73b163013a6495578a2967740a8ed3c1"

From ed4bdcdfa071132ed3c80654ec6efba77c91eaa0 Mon Sep 17 00:00:00 2001
From: Stavros Efthymiou <35475381+stavros11@users.noreply.github.com>
Date: Thu, 2 May 2024 23:19:55 +0400
Subject: [PATCH 13/22] chore: remove FluxPulse object and add frequency: 0 to
 flux pulses in runcards

---
 src/qibolab/dummy/parameters.json         | 20 ++++++++++++++++++++
 src/qibolab/pulses/pulse.py               |  8 +-------
 src/qibolab/serialize.py                  |  2 --
 tests/dummy_qrc/qblox/parameters.json     |  3 +++
 tests/dummy_qrc/qm/parameters.json        |  2 ++
 tests/dummy_qrc/qm_octave/parameters.json |  2 ++
 tests/dummy_qrc/zurich/parameters.json    |  5 +++++
 7 files changed, 33 insertions(+), 9 deletions(-)

diff --git a/src/qibolab/dummy/parameters.json b/src/qibolab/dummy/parameters.json
index c1c666a66a..3a5f5846e2 100644
--- a/src/qibolab/dummy/parameters.json
+++ b/src/qibolab/dummy/parameters.json
@@ -173,6 +173,7 @@
             "rel_sigma": 5,
             "width": 0.75
           },
+          "frequency": 0,
           "type": "cf"
         }
       },
@@ -185,6 +186,7 @@
             "rel_sigma": 5,
             "width": 0.75
           },
+          "frequency": 0,
           "type": "cf"
         }
       },
@@ -197,6 +199,7 @@
             "rel_sigma": 5,
             "width": 0.75
           },
+          "frequency": 0,
           "type": "cf"
         }
       },
@@ -209,6 +212,7 @@
             "rel_sigma": 5,
             "width": 0.75
           },
+          "frequency": 0,
           "type": "cf"
         }
       }
@@ -225,6 +229,7 @@
               "width": 0.75
             },
             "qubit": 2,
+            "frequency": 0,
             "type": "qf"
           },
           {
@@ -246,6 +251,7 @@
               "width": 0.75
             },
             "coupler": 0,
+            "frequency": 0,
             "type": "cf"
           }
         ],
@@ -259,6 +265,7 @@
               "width": 0.75
             },
             "qubit": 2,
+            "frequency": 0,
             "type": "qf"
           },
           {
@@ -280,6 +287,7 @@
               "width": 0.75
             },
             "coupler": 0,
+            "frequency": 0,
             "type": "cf"
           }
         ]
@@ -295,6 +303,7 @@
               "width": 0.75
             },
             "qubit": 2,
+            "frequency": 0,
             "type": "qf"
           },
           {
@@ -316,6 +325,7 @@
               "width": 0.75
             },
             "coupler": 1,
+            "frequency": 0,
             "type": "cf"
           }
         ],
@@ -329,6 +339,7 @@
               "width": 0.75
             },
             "qubit": 2,
+            "frequency": 0,
             "type": "qf"
           },
           {
@@ -350,6 +361,7 @@
               "width": 0.75
             },
             "coupler": 1,
+            "frequency": 0,
             "type": "cf"
           }
         ]
@@ -365,6 +377,7 @@
               "width": 0.75
             },
             "qubit": 2,
+            "frequency": 0,
             "type": "qf"
           },
           {
@@ -386,6 +399,7 @@
               "width": 0.75
             },
             "coupler": 3,
+            "frequency": 0,
             "type": "cf"
           }
         ],
@@ -399,6 +413,7 @@
               "width": 0.75
             },
             "qubit": 2,
+            "frequency": 0,
             "type": "qf"
           },
           {
@@ -420,6 +435,7 @@
               "width": 0.75
             },
             "coupler": 3,
+            "frequency": 0,
             "type": "cf"
           }
         ],
@@ -455,6 +471,7 @@
               "width": 0.75
             },
             "qubit": 2,
+            "frequency": 0,
             "type": "qf"
           },
           {
@@ -476,6 +493,7 @@
               "width": 0.75
             },
             "coupler": 4,
+            "frequency": 0,
             "type": "cf"
           }
         ],
@@ -489,6 +507,7 @@
               "width": 0.75
             },
             "qubit": 2,
+            "frequency": 0,
             "type": "qf"
           },
           {
@@ -510,6 +529,7 @@
               "width": 0.75
             },
             "coupler": 4,
+            "frequency": 0,
             "type": "cf"
           }
         ]
diff --git a/src/qibolab/pulses/pulse.py b/src/qibolab/pulses/pulse.py
index cf93156e96..3c2c59b55e 100644
--- a/src/qibolab/pulses/pulse.py
+++ b/src/qibolab/pulses/pulse.py
@@ -119,12 +119,6 @@ def __hash__(self):
         )
 
 
-class FluxPulse(Pulse):
-    frequency: float = 0.0
-    relative_phase: float = 0.0
-    type: PulseType = PulseType.FLUX
-
-
 class Delay(Model):
     """A wait instruction during which we are not sending any pulses to the
     QPU."""
@@ -154,4 +148,4 @@ def duration(self):
         return 0
 
 
-PulseLike = Union[Pulse, FluxPulse, Delay, VirtualZ]
+PulseLike = Union[Pulse, Delay, VirtualZ]
diff --git a/src/qibolab/serialize.py b/src/qibolab/serialize.py
index 84b3175963..9051f98b22 100644
--- a/src/qibolab/serialize.py
+++ b/src/qibolab/serialize.py
@@ -186,8 +186,6 @@ def load_instrument_settings(
 
 def _dump_pulse(pulse: Pulse):
     data = pulse.model_dump()
-    if pulse.type in (PulseType.FLUX, PulseType.COUPLERFLUX):
-        del data["frequency"]
     data["type"] = data["type"].value
     if "channel" in data:
         del data["channel"]
diff --git a/tests/dummy_qrc/qblox/parameters.json b/tests/dummy_qrc/qblox/parameters.json
index d7c2836921..45058b9101 100644
--- a/tests/dummy_qrc/qblox/parameters.json
+++ b/tests/dummy_qrc/qblox/parameters.json
@@ -208,6 +208,7 @@
               "g": 0.1
             },
             "qubit": 3,
+            "frequency": 0,
             "type": "qf"
           },
           {
@@ -234,6 +235,7 @@
               "g": 0.1
             },
             "qubit": 2,
+            "frequency": 0,
             "type": "qf"
           }
         ]
@@ -250,6 +252,7 @@
               "g": 0.1
             },
             "qubit": 2,
+            "frequency": 0,
             "type": "qf"
           },
           {
diff --git a/tests/dummy_qrc/qm/parameters.json b/tests/dummy_qrc/qm/parameters.json
index d4a67753e4..d8eb059eeb 100644
--- a/tests/dummy_qrc/qm/parameters.json
+++ b/tests/dummy_qrc/qm/parameters.json
@@ -184,6 +184,7 @@
             "amplitude": 0.055,
             "envelope": { "kind": "rectangular" },
             "qubit": 2,
+            "frequency": 0,
             "type": "qf"
           },
           {
@@ -205,6 +206,7 @@
             "amplitude": -0.0513,
             "envelope": { "kind": "rectangular" },
             "qubit": 3,
+            "frequency": 0,
             "type": "qf"
           },
           {
diff --git a/tests/dummy_qrc/qm_octave/parameters.json b/tests/dummy_qrc/qm_octave/parameters.json
index a772204980..0e496f4220 100644
--- a/tests/dummy_qrc/qm_octave/parameters.json
+++ b/tests/dummy_qrc/qm_octave/parameters.json
@@ -206,6 +206,7 @@
             "amplitude": 0.055,
             "envelope": { "kind": "rectangular" },
             "qubit": 2,
+            "frequency": 0,
             "type": "qf"
           },
           {
@@ -227,6 +228,7 @@
             "amplitude": -0.0513,
             "envelope": { "kind": "rectangular" },
             "qubit": 3,
+            "frequency": 0,
             "type": "qf"
           },
           {
diff --git a/tests/dummy_qrc/zurich/parameters.json b/tests/dummy_qrc/zurich/parameters.json
index 3ab0c3c07d..0ff76701ec 100644
--- a/tests/dummy_qrc/zurich/parameters.json
+++ b/tests/dummy_qrc/zurich/parameters.json
@@ -157,6 +157,7 @@
           "type": "cf",
           "duration": 1000,
           "amplitude": 0.5,
+          "frequency": 0,
           "envelope": { "kind": "rectangular" }
         }
       },
@@ -165,6 +166,7 @@
           "type": "cf",
           "duration": 1000,
           "amplitude": 0.5,
+          "frequency": 0,
           "envelope": { "kind": "rectangular" }
         }
       },
@@ -173,6 +175,7 @@
           "type": "cf",
           "duration": 1000,
           "amplitude": 0.5,
+          "frequency": 0,
           "envelope": { "kind": "rectangular" }
         }
       },
@@ -181,6 +184,7 @@
           "type": "cf",
           "duration": 1000,
           "amplitude": 0.5,
+          "frequency": 0,
           "envelope": { "kind": "rectangular" }
         }
       }
@@ -198,6 +202,7 @@
               "g": 0.1
             },
             "qubit": 3,
+            "frequency": 0,
             "type": "qf"
           },
           {

From 3a755d73e55ff840e235c4280f9de82ee3ac5a68 Mon Sep 17 00:00:00 2001
From: Alessandro Candido <candido.ale@gmail.com>
Date: Tue, 25 Jun 2024 19:13:08 +0200
Subject: [PATCH 14/22] fix: Propagate some 0.2 updates to the emulator

---
 src/qibolab/instruments/emulator/pulse_simulator.py | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/src/qibolab/instruments/emulator/pulse_simulator.py b/src/qibolab/instruments/emulator/pulse_simulator.py
index 07e40aceb7..7d657a8b69 100644
--- a/src/qibolab/instruments/emulator/pulse_simulator.py
+++ b/src/qibolab/instruments/emulator/pulse_simulator.py
@@ -12,7 +12,7 @@
 from qibolab.instruments.abstract import Controller
 from qibolab.instruments.emulator.engines.qutip_engine import QutipSimulator
 from qibolab.instruments.emulator.models import general_no_coupler_model
-from qibolab.pulses import PulseSequence, PulseType, ReadoutPulse
+from qibolab.pulses import PulseSequence, PulseType
 from qibolab.qubits import Qubit, QubitId
 from qibolab.result import IntegratedResults, SampleResults
 from qibolab.sweeper import Parameter, Sweeper, SweeperType
@@ -22,7 +22,6 @@
     Parameter.duration,
     Parameter.frequency,
     Parameter.relative_phase,
-    Parameter.start,
 }
 
 SIMULATION_ENGINES = {
@@ -755,7 +754,7 @@ def truncate_ro_pulses(
     """
     sequence = copy.deepcopy(sequence)
     for i in range(len(sequence)):
-        if type(sequence[i]) is ReadoutPulse:
+        if sequence[i].type is PulseType.READOUT:
             sequence[i].duration = 1
 
     return sequence

From 490876363b155a4beb6ca78881ef5e5403e7f5f0 Mon Sep 17 00:00:00 2001
From: Alessandro Candido <candido.ale@gmail.com>
Date: Tue, 25 Jun 2024 19:28:44 +0200
Subject: [PATCH 15/22] build: Update Nix configuration

---
 flake.lock | 310 +++++++++--------------------------------------------
 flake.nix  |   8 +-
 2 files changed, 53 insertions(+), 265 deletions(-)

diff --git a/flake.lock b/flake.lock
index 4f978df5de..0178efdcfd 100644
--- a/flake.lock
+++ b/flake.lock
@@ -3,19 +3,25 @@
     "cachix": {
       "inputs": {
         "devenv": "devenv_2",
-        "flake-compat": "flake-compat_2",
+        "flake-compat": [
+          "devenv",
+          "flake-compat"
+        ],
         "nixpkgs": [
           "devenv",
           "nixpkgs"
         ],
-        "pre-commit-hooks": "pre-commit-hooks"
+        "pre-commit-hooks": [
+          "devenv",
+          "pre-commit-hooks"
+        ]
       },
       "locked": {
-        "lastModified": 1710475558,
-        "narHash": "sha256-egKrPCKjy/cE+NqCj4hg2fNX/NwLCf0bRDInraYXDgs=",
+        "lastModified": 1712055811,
+        "narHash": "sha256-7FcfMm5A/f02yyzuavJe06zLa9hcMHsagE28ADcmQvk=",
         "owner": "cachix",
         "repo": "cachix",
-        "rev": "661bbb7f8b55722a0406456b15267b5426a3bda6",
+        "rev": "02e38da89851ec7fec3356a5c04bc8349cae0e30",
         "type": "github"
       },
       "original": {
@@ -27,19 +33,19 @@
     "devenv": {
       "inputs": {
         "cachix": "cachix",
-        "flake-compat": "flake-compat_4",
+        "flake-compat": "flake-compat_2",
         "nix": "nix_2",
         "nixpkgs": [
           "nixpkgs"
         ],
-        "pre-commit-hooks": "pre-commit-hooks_2"
+        "pre-commit-hooks": "pre-commit-hooks"
       },
       "locked": {
-        "lastModified": 1711095830,
-        "narHash": "sha256-E67Yh1R1h8b01nVAhiYJsY6eQFqk5VIar13ntSbi56Q=",
+        "lastModified": 1719323427,
+        "narHash": "sha256-f4ppP2MBPJzkuy/q+PIfyyTWX9OzqgPV1XSphX71tdA=",
         "owner": "cachix",
         "repo": "devenv",
-        "rev": "84ce563fcecbdee90b3c3550ab4f2fcd37b37def",
+        "rev": "f810f8d8cb4e674d7e635107510bcbbabaa755a3",
         "type": "github"
       },
       "original": {
@@ -87,11 +93,11 @@
         "rust-analyzer-src": "rust-analyzer-src"
       },
       "locked": {
-        "lastModified": 1711088506,
-        "narHash": "sha256-USdlY7Tx2oJWqFBpp10+03+h7eVhpkQ4s9t1ERjeIJE=",
+        "lastModified": 1719296889,
+        "narHash": "sha256-rX9GzfrzvjfqrjfyKnX+zmXTYNRZXqEUWUX2u+LBdi0=",
         "owner": "nix-community",
         "repo": "fenix",
-        "rev": "85f4139f3c092cf4afd9f9906d7ed218ef262c97",
+        "rev": "049a6ecec1da711d3d84072732e4b14f98e0edd4",
         "type": "github"
       },
       "original": {
@@ -132,70 +138,6 @@
         "type": "github"
       }
     },
-    "flake-compat_3": {
-      "flake": false,
-      "locked": {
-        "lastModified": 1696426674,
-        "narHash": "sha256-kvjfFW7WAETZlt09AgDn1MrtKzP7t90Vf7vypd3OL1U=",
-        "owner": "edolstra",
-        "repo": "flake-compat",
-        "rev": "0f9255e01c2351cc7d116c072cb317785dd33b33",
-        "type": "github"
-      },
-      "original": {
-        "owner": "edolstra",
-        "repo": "flake-compat",
-        "type": "github"
-      }
-    },
-    "flake-compat_4": {
-      "flake": false,
-      "locked": {
-        "lastModified": 1696426674,
-        "narHash": "sha256-kvjfFW7WAETZlt09AgDn1MrtKzP7t90Vf7vypd3OL1U=",
-        "owner": "edolstra",
-        "repo": "flake-compat",
-        "rev": "0f9255e01c2351cc7d116c072cb317785dd33b33",
-        "type": "github"
-      },
-      "original": {
-        "owner": "edolstra",
-        "repo": "flake-compat",
-        "type": "github"
-      }
-    },
-    "flake-compat_5": {
-      "flake": false,
-      "locked": {
-        "lastModified": 1673956053,
-        "narHash": "sha256-4gtG9iQuiKITOjNQQeQIpoIB6b16fm+504Ch3sNKLd8=",
-        "owner": "edolstra",
-        "repo": "flake-compat",
-        "rev": "35bb57c0c8d8b62bbfd284272c928ceb64ddbde9",
-        "type": "github"
-      },
-      "original": {
-        "owner": "edolstra",
-        "repo": "flake-compat",
-        "type": "github"
-      }
-    },
-    "flake-compat_6": {
-      "flake": false,
-      "locked": {
-        "lastModified": 1696426674,
-        "narHash": "sha256-kvjfFW7WAETZlt09AgDn1MrtKzP7t90Vf7vypd3OL1U=",
-        "owner": "edolstra",
-        "repo": "flake-compat",
-        "rev": "0f9255e01c2351cc7d116c072cb317785dd33b33",
-        "type": "github"
-      },
-      "original": {
-        "owner": "edolstra",
-        "repo": "flake-compat",
-        "type": "github"
-      }
-    },
     "flake-utils": {
       "inputs": {
         "systems": "systems"
@@ -219,11 +161,11 @@
         "systems": "systems_2"
       },
       "locked": {
-        "lastModified": 1701680307,
-        "narHash": "sha256-kAuep2h5ajznlPMD9rnQyffWG8EM/C73lejGofXvdM8=",
+        "lastModified": 1710146030,
+        "narHash": "sha256-SZ5L6eA7HJ/nmkzGG7/ISclqe6oZdOZTNoesiInkXPQ=",
         "owner": "numtide",
         "repo": "flake-utils",
-        "rev": "4022d587cbbfd70fe950c1e2083a02621806a725",
+        "rev": "b1d9ab70662946ef0850d488da1c9019f3a9752a",
         "type": "github"
       },
       "original": {
@@ -232,65 +174,7 @@
         "type": "github"
       }
     },
-    "flake-utils_3": {
-      "inputs": {
-        "systems": "systems_3"
-      },
-      "locked": {
-        "lastModified": 1701680307,
-        "narHash": "sha256-kAuep2h5ajznlPMD9rnQyffWG8EM/C73lejGofXvdM8=",
-        "owner": "numtide",
-        "repo": "flake-utils",
-        "rev": "4022d587cbbfd70fe950c1e2083a02621806a725",
-        "type": "github"
-      },
-      "original": {
-        "owner": "numtide",
-        "repo": "flake-utils",
-        "type": "github"
-      }
-    },
-    "flake-utils_4": {
-      "inputs": {
-        "systems": "systems_4"
-      },
-      "locked": {
-        "lastModified": 1701680307,
-        "narHash": "sha256-kAuep2h5ajznlPMD9rnQyffWG8EM/C73lejGofXvdM8=",
-        "owner": "numtide",
-        "repo": "flake-utils",
-        "rev": "4022d587cbbfd70fe950c1e2083a02621806a725",
-        "type": "github"
-      },
-      "original": {
-        "id": "flake-utils",
-        "type": "indirect"
-      }
-    },
     "gitignore": {
-      "inputs": {
-        "nixpkgs": [
-          "devenv",
-          "cachix",
-          "pre-commit-hooks",
-          "nixpkgs"
-        ]
-      },
-      "locked": {
-        "lastModified": 1703887061,
-        "narHash": "sha256-gGPa9qWNc6eCXT/+Z5/zMkyYOuRZqeFZBDbopNZQkuY=",
-        "owner": "hercules-ci",
-        "repo": "gitignore.nix",
-        "rev": "43e1aa1308018f37118e34d3a9cb4f5e75dc11d5",
-        "type": "github"
-      },
-      "original": {
-        "owner": "hercules-ci",
-        "repo": "gitignore.nix",
-        "type": "github"
-      }
-    },
-    "gitignore_2": {
       "inputs": {
         "nixpkgs": [
           "devenv",
@@ -299,11 +183,11 @@
         ]
       },
       "locked": {
-        "lastModified": 1703887061,
-        "narHash": "sha256-gGPa9qWNc6eCXT/+Z5/zMkyYOuRZqeFZBDbopNZQkuY=",
+        "lastModified": 1709087332,
+        "narHash": "sha256-HG2cCnktfHsKV0s4XW83gU3F57gaTljL9KNSuG6bnQs=",
         "owner": "hercules-ci",
         "repo": "gitignore.nix",
-        "rev": "43e1aa1308018f37118e34d3a9cb4f5e75dc11d5",
+        "rev": "637db329424fd7e46cf4185293b9cc8c88c95394",
         "type": "github"
       },
       "original": {
@@ -324,11 +208,11 @@
         "nixpkgs-regression": "nixpkgs-regression"
       },
       "locked": {
-        "lastModified": 1708577783,
-        "narHash": "sha256-92xq7eXlxIT5zFNccLpjiP7sdQqQI30Gyui2p/PfKZM=",
+        "lastModified": 1712911606,
+        "narHash": "sha256-BGvBhepCufsjcUkXnEEXhEVjwdJAwPglCC2+bInc794=",
         "owner": "domenkozar",
         "repo": "nix",
-        "rev": "ecd0af0c1f56de32cbad14daa1d82a132bf298f8",
+        "rev": "b24a9318ea3f3600c1e24b4a00691ee912d4de12",
         "type": "github"
       },
       "original": {
@@ -364,7 +248,10 @@
     },
     "nix_2": {
       "inputs": {
-        "flake-compat": "flake-compat_5",
+        "flake-compat": [
+          "devenv",
+          "flake-compat"
+        ],
         "nixpkgs": [
           "devenv",
           "nixpkgs"
@@ -372,11 +259,11 @@
         "nixpkgs-regression": "nixpkgs-regression_2"
       },
       "locked": {
-        "lastModified": 1710500156,
-        "narHash": "sha256-zvCqeUO2GLOm7jnU23G4EzTZR7eylcJN+HJ5svjmubI=",
+        "lastModified": 1712911606,
+        "narHash": "sha256-BGvBhepCufsjcUkXnEEXhEVjwdJAwPglCC2+bInc794=",
         "owner": "domenkozar",
         "repo": "nix",
-        "rev": "c5bbf14ecbd692eeabf4184cc8d50f79c2446549",
+        "rev": "b24a9318ea3f3600c1e24b4a00691ee912d4de12",
         "type": "github"
       },
       "original": {
@@ -402,28 +289,6 @@
         "type": "github"
       }
     },
-    "nixpkgs-python": {
-      "inputs": {
-        "flake-compat": "flake-compat_6",
-        "flake-utils": "flake-utils_4",
-        "nixpkgs": [
-          "nixpkgs"
-        ]
-      },
-      "locked": {
-        "lastModified": 1710929962,
-        "narHash": "sha256-CuPuUyX1TmxJDDZFOZMr7kHTzA8zoSJaVw0+jDVo2fw=",
-        "owner": "cachix",
-        "repo": "nixpkgs-python",
-        "rev": "a9e19aafbf75b8c7e5adf2d7319939309ebe0d77",
-        "type": "github"
-      },
-      "original": {
-        "owner": "cachix",
-        "repo": "nixpkgs-python",
-        "type": "github"
-      }
-    },
     "nixpkgs-regression": {
       "locked": {
         "lastModified": 1643052045,
@@ -458,27 +323,11 @@
     },
     "nixpkgs-stable": {
       "locked": {
-        "lastModified": 1704874635,
-        "narHash": "sha256-YWuCrtsty5vVZvu+7BchAxmcYzTMfolSPP5io8+WYCg=",
+        "lastModified": 1710695816,
+        "narHash": "sha256-3Eh7fhEID17pv9ZxrPwCLfqXnYP006RKzSs0JptsN84=",
         "owner": "NixOS",
         "repo": "nixpkgs",
-        "rev": "3dc440faeee9e889fe2d1b4d25ad0f430d449356",
-        "type": "github"
-      },
-      "original": {
-        "owner": "NixOS",
-        "ref": "nixos-23.11",
-        "repo": "nixpkgs",
-        "type": "github"
-      }
-    },
-    "nixpkgs-stable_2": {
-      "locked": {
-        "lastModified": 1704874635,
-        "narHash": "sha256-YWuCrtsty5vVZvu+7BchAxmcYzTMfolSPP5io8+WYCg=",
-        "owner": "NixOS",
-        "repo": "nixpkgs",
-        "rev": "3dc440faeee9e889fe2d1b4d25ad0f430d449356",
+        "rev": "614b4613980a522ba49f0d194531beddbb7220d3",
         "type": "github"
       },
       "original": {
@@ -490,11 +339,11 @@
     },
     "nixpkgs_2": {
       "locked": {
-        "lastModified": 1710806803,
-        "narHash": "sha256-qrxvLS888pNJFwJdK+hf1wpRCSQcqA6W5+Ox202NDa0=",
+        "lastModified": 1719075281,
+        "narHash": "sha256-CyyxvOwFf12I91PBWz43iGT1kjsf5oi6ax7CrvaMyAo=",
         "owner": "NixOS",
         "repo": "nixpkgs",
-        "rev": "b06025f1533a1e07b6db3e75151caa155d1c7eb3",
+        "rev": "a71e967ef3694799d0c418c98332f7ff4cc5f6af",
         "type": "github"
       },
       "original": {
@@ -530,51 +379,25 @@
       }
     },
     "pre-commit-hooks": {
-      "inputs": {
-        "flake-compat": "flake-compat_3",
-        "flake-utils": "flake-utils_2",
-        "gitignore": "gitignore",
-        "nixpkgs": [
-          "devenv",
-          "cachix",
-          "nixpkgs"
-        ],
-        "nixpkgs-stable": "nixpkgs-stable"
-      },
-      "locked": {
-        "lastModified": 1708018599,
-        "narHash": "sha256-M+Ng6+SePmA8g06CmUZWi1AjG2tFBX9WCXElBHEKnyM=",
-        "owner": "cachix",
-        "repo": "pre-commit-hooks.nix",
-        "rev": "5df5a70ad7575f6601d91f0efec95dd9bc619431",
-        "type": "github"
-      },
-      "original": {
-        "owner": "cachix",
-        "repo": "pre-commit-hooks.nix",
-        "type": "github"
-      }
-    },
-    "pre-commit-hooks_2": {
       "inputs": {
         "flake-compat": [
           "devenv",
           "flake-compat"
         ],
-        "flake-utils": "flake-utils_3",
-        "gitignore": "gitignore_2",
+        "flake-utils": "flake-utils_2",
+        "gitignore": "gitignore",
         "nixpkgs": [
           "devenv",
           "nixpkgs"
         ],
-        "nixpkgs-stable": "nixpkgs-stable_2"
+        "nixpkgs-stable": "nixpkgs-stable"
       },
       "locked": {
-        "lastModified": 1708018599,
-        "narHash": "sha256-M+Ng6+SePmA8g06CmUZWi1AjG2tFBX9WCXElBHEKnyM=",
+        "lastModified": 1713775815,
+        "narHash": "sha256-Wu9cdYTnGQQwtT20QQMg7jzkANKQjwBD9iccfGKkfls=",
         "owner": "cachix",
         "repo": "pre-commit-hooks.nix",
-        "rev": "5df5a70ad7575f6601d91f0efec95dd9bc619431",
+        "rev": "2ac4dcbf55ed43f3be0bae15e181f08a57af24a4",
         "type": "github"
       },
       "original": {
@@ -588,18 +411,17 @@
         "devenv": "devenv",
         "fenix": "fenix",
         "nixpkgs": "nixpkgs_2",
-        "nixpkgs-python": "nixpkgs-python",
-        "systems": "systems_5"
+        "systems": "systems_3"
       }
     },
     "rust-analyzer-src": {
       "flake": false,
       "locked": {
-        "lastModified": 1711052942,
-        "narHash": "sha256-lLsAhLgm/Nbin41wdfGKU7Rgd6ONBxYCUAMv53NXPjo=",
+        "lastModified": 1719233333,
+        "narHash": "sha256-+BgWRK3bWVIFwdn43DGRVscnu9P63Mndyhte/hgEwUA=",
         "owner": "rust-lang",
         "repo": "rust-analyzer",
-        "rev": "7ef7f442fc34b5eadb1c6ad6433bd6d0c51b056b",
+        "rev": "7b11fdeb681c12002861b9804a388efde81c9647",
         "type": "github"
       },
       "original": {
@@ -653,36 +475,6 @@
         "repo": "default",
         "type": "github"
       }
-    },
-    "systems_4": {
-      "locked": {
-        "lastModified": 1681028828,
-        "narHash": "sha256-Vy1rq5AaRuLzOxct8nz4T6wlgyUR7zLU309k9mBC768=",
-        "owner": "nix-systems",
-        "repo": "default",
-        "rev": "da67096a3b9bf56a91d16901293e51ba5b49a27e",
-        "type": "github"
-      },
-      "original": {
-        "owner": "nix-systems",
-        "repo": "default",
-        "type": "github"
-      }
-    },
-    "systems_5": {
-      "locked": {
-        "lastModified": 1681028828,
-        "narHash": "sha256-Vy1rq5AaRuLzOxct8nz4T6wlgyUR7zLU309k9mBC768=",
-        "owner": "nix-systems",
-        "repo": "default",
-        "rev": "da67096a3b9bf56a91d16901293e51ba5b49a27e",
-        "type": "github"
-      },
-      "original": {
-        "owner": "nix-systems",
-        "repo": "default",
-        "type": "github"
-      }
     }
   },
   "root": "root",
diff --git a/flake.nix b/flake.nix
index 9b2c037a89..3b65860c4b 100644
--- a/flake.nix
+++ b/flake.nix
@@ -6,10 +6,6 @@
       url = "github:cachix/devenv";
       inputs.nixpkgs.follows = "nixpkgs";
     };
-    nixpkgs-python = {
-      url = "github:cachix/nixpkgs-python";
-      inputs.nixpkgs.follows = "nixpkgs";
-    };
     fenix = {
       url = "github:nix-community/fenix";
       inputs.nixpkgs.follows = "nixpkgs";
@@ -49,7 +45,7 @@
               config,
               ...
             }: {
-              packages = with pkgs; [pre-commit poethepoet jupyter zlib];
+              packages = with pkgs; [pre-commit poethepoet jupyter];
 
               env = {
                 QIBOLAB_PLATFORMS = (dirOf config.env.DEVENV_ROOT) + "/qibolab_platforms_qrc";
@@ -65,6 +61,7 @@
 
               languages.python = {
                 enable = true;
+                libraries = with pkgs; [zlib];
                 poetry = {
                   enable = true;
                   install = {
@@ -77,7 +74,6 @@
                     ];
                   };
                 };
-                version = "3.11";
               };
 
               languages.rust = {

From 3ed320c236c44ed06a568cbee626ea15becbc7ef Mon Sep 17 00:00:00 2001
From: Alessandro Candido <candido.ale@gmail.com>
Date: Wed, 26 Jun 2024 00:58:48 +0200
Subject: [PATCH 16/22] build: Unlock emulator dependencies

---
 poetry.lock    | 135 +++++++++++++++++++++++--------------------------
 pyproject.toml |  10 ++--
 2 files changed, 67 insertions(+), 78 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index d98e36153e..84cc4e3a60 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,4 +1,4 @@
-# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand.
+# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand.
 
 [[package]]
 name = "alabaster"
@@ -1554,13 +1554,13 @@ files = [
 
 [[package]]
 name = "importlib-metadata"
-version = "7.2.1"
+version = "8.0.0"
 description = "Read metadata from Python packages"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "importlib_metadata-7.2.1-py3-none-any.whl", hash = "sha256:ffef94b0b66046dd8ea2d619b701fe978d9264d38f3998bc4c27ec3b146a87c8"},
-    {file = "importlib_metadata-7.2.1.tar.gz", hash = "sha256:509ecb2ab77071db5137c655e24ceb3eee66e7bbc6574165d0d114d9fc4bbe68"},
+    {file = "importlib_metadata-8.0.0-py3-none-any.whl", hash = "sha256:15584cf2b1bf449d98ff8a6ff1abef57bf20f3ac6454f431736cd3e660921b2f"},
+    {file = "importlib_metadata-8.0.0.tar.gz", hash = "sha256:188bd24e4c346d3f0a933f275c2fec67050326a856b9a359881d7c2a697e8812"},
 ]
 
 [package.dependencies]
@@ -4034,7 +4034,6 @@ files = [
     {file = "PyYAML-6.0.1-cp311-cp311-win_amd64.whl", hash = "sha256:bf07ee2fef7014951eeb99f56f39c9bb4af143d8aa3c21b1677805985307da34"},
     {file = "PyYAML-6.0.1-cp312-cp312-macosx_10_9_x86_64.whl", hash = "sha256:855fb52b0dc35af121542a76b9a84f8d1cd886ea97c84703eaa6d88e37a2ad28"},
     {file = "PyYAML-6.0.1-cp312-cp312-macosx_11_0_arm64.whl", hash = "sha256:40df9b996c2b73138957fe23a16a4f0ba614f4c0efce1e9406a184b6d07fa3a9"},
-    {file = "PyYAML-6.0.1-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:a08c6f0fe150303c1c6b71ebcd7213c2858041a7e01975da3a99aed1e7a378ef"},
     {file = "PyYAML-6.0.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:6c22bec3fbe2524cde73d7ada88f6566758a8f7227bfbf93a408a9d86bcc12a0"},
     {file = "PyYAML-6.0.1-cp312-cp312-musllinux_1_1_x86_64.whl", hash = "sha256:8d4e9c88387b0f5c7d5f281e55304de64cf7f9c0021a3525bd3b1c542da3b0e4"},
     {file = "PyYAML-6.0.1-cp312-cp312-win32.whl", hash = "sha256:d483d2cdf104e7c9fa60c544d92981f12ad66a457afae824d146093b8c294c54"},
@@ -4414,46 +4413,38 @@ interplot = ["dill (>=0.3.4,<0.4.0)", "ipython (>=7.31.1,<8.0.0)", "pypiwin32 (>
 
 [[package]]
 name = "qutip"
-version = "4.7.5"
+version = "5.0.2"
 description = "QuTiP: The Quantum Toolbox in Python"
 optional = false
-python-versions = "*"
+python-versions = ">=3.9"
 files = [
-    {file = "qutip-4.7.5-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:b4ae6b823674328703f96ca1fec75260c773d3eea981f91eecaa71235c965ba3"},
-    {file = "qutip-4.7.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:7141cf931b6f92397cd6738d082c46e082b26c066deb494a4b6b8f1f841b0aa8"},
-    {file = "qutip-4.7.5-cp310-cp310-win_amd64.whl", hash = "sha256:a0e513344872dfbd5728a5a1688671909fa4ebeb1d42f09bc896518ed880f82c"},
-    {file = "qutip-4.7.5-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:7a257fc52facddb25149c2fc03400fd219b893a9238fde46548d9e1430c16b2d"},
-    {file = "qutip-4.7.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:95587c1bd98084c6ca29c4d745048da39ed2431854dd1f12914c21aa47076e9c"},
-    {file = "qutip-4.7.5-cp311-cp311-win_amd64.whl", hash = "sha256:8c4b7b9ad94b9edad32d290d0823af4e87daf123c5398925afd8f99f8c6a8fcb"},
-    {file = "qutip-4.7.5-cp36-cp36m-macosx_10_9_x86_64.whl", hash = "sha256:cd223ff0f31cef3b08de9d898d959c65a4cd3ef05eec3cf91ee25431285d284d"},
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-    {file = "qutip-4.7.5-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl", hash = "sha256:d0090d2543fcab58f966387b0553987971c75cc8b7fb269c354e68b023d87f18"},
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-    {file = "qutip-4.7.5-cp37-cp37m-macosx_10_9_x86_64.whl", hash = "sha256:11b6b750e6d68d6b35a9f64576d00742fb0f7ea97f5e624bd01fe9fec0eb0c53"},
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-    {file = "qutip-4.7.5-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl", hash = "sha256:736a1b0f13bcf51fe9152478409d78a7608d9a7bb924238483df8a0df55c88fd"},
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-    {file = "qutip-4.7.5-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:4595d59c5cd22c88022897d3bdbdab191a9eb032ee2ae8fd88937b82d736435c"},
-    {file = "qutip-4.7.5-cp38-cp38-win_amd64.whl", hash = "sha256:79b2667a7ded59d05722c78bfd71054e63a7c0ceb8a4ec7426ece69cd125668c"},
-    {file = "qutip-4.7.5-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:b9c16d9f5f7e61d8c0b904b498fa44d30ded6685d7fe28c3c19c57b9c0fc8fc9"},
-    {file = "qutip-4.7.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:acb9f827ea757faa193bf19e42269ed52da06efc38f966923ee6b793b28526f5"},
-    {file = "qutip-4.7.5-cp39-cp39-win_amd64.whl", hash = "sha256:36502a7883b8c87d42381aa7b8fb0b3450b3bed26924dfdad9e7829d33a2ced3"},
-    {file = "qutip-4.7.5.tar.gz", hash = "sha256:a0cc9883281ec89e38ac635adc4bb602d85ec49071628ee17d3bf2c14b5c11ac"},
-]
-
-[package.dependencies]
-numpy = ">=1.16.6"
+    {file = "qutip-5.0.2-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:2e31c629d2f45ed60cf2510b64f867632a2148dac34b1d3e047c27e8c9e35713"},
+    {file = "qutip-5.0.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:ebf1bf3d5a3e8337121549d4dab62a28b268d417f1614598bd9422f5b2669fd9"},
+    {file = "qutip-5.0.2-cp310-cp310-win_amd64.whl", hash = "sha256:08c7b7a42796b160b3d58eb0873797ad15748c5842076f259ecfed2e9645f5a9"},
+    {file = "qutip-5.0.2-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:fb1fd548a1db7217530569773a8fa617ee1cf1ff9776efc84684f1f40089b8bf"},
+    {file = "qutip-5.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:f298929be214bb057cddb5434711b8471779259115329ed7edea501b489d3b79"},
+    {file = "qutip-5.0.2-cp311-cp311-win_amd64.whl", hash = "sha256:2f385d6b540def78aabc87c5aaf230bd83b58db7a6383b11651354a30f3c2bf8"},
+    {file = "qutip-5.0.2-cp312-cp312-macosx_11_0_arm64.whl", hash = "sha256:52eabd9e1bfa608b0af13d07bda8f43b97f2d9d3cb1ea493d35a851bc2cbf006"},
+    {file = "qutip-5.0.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:97fc764e302da7450c63727773e21cab78b45fc66f6e904e28a786c0f87f7db3"},
+    {file = "qutip-5.0.2-cp312-cp312-win_amd64.whl", hash = "sha256:0fb98f3ff347ee75d90a7b3ae65014c62e6985abf62d28e75d26ad8fde541867"},
+    {file = "qutip-5.0.2-cp39-cp39-macosx_11_0_arm64.whl", hash = "sha256:5be725b2d43cd88be6432b14d687e850c653bee24ca277423c7a737b7be389ec"},
+    {file = "qutip-5.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:dd57dc5c1e654f3e8d4dcad1d3ffa3fba608b8ca9523088d5f7a19004f3b26f9"},
+    {file = "qutip-5.0.2-cp39-cp39-win_amd64.whl", hash = "sha256:493fcdf20f43b61a426b206ae7ce01265d869f8038934c097076d6611a228cb6"},
+    {file = "qutip-5.0.2.tar.gz", hash = "sha256:1c3d0fecc3e237783a9ef22cec2c54f49f0da4c17b9ee036848bdd9009f4baf5"},
+]
+
+[package.dependencies]
+numpy = ">=1.22,<2.0.0"
 packaging = "*"
-scipy = ">=1.0"
+scipy = ">=1.8"
 
 [package.extras]
-full = ["cvxopt", "cvxpy (>=1.0)", "cython (>=0.29.20,<3.0.0)", "ipython", "matplotlib (>=1.2.1)", "pytest (>=5.2)", "pytest-rerunfailures"]
+extras = ["loky", "tqdm"]
+full = ["cvxopt", "cvxpy (>=1.0)", "cython (>=0.29.20)", "cython (>=0.29.20,<3.0.0)", "filelock", "ipython", "loky", "matplotlib (>=1.2.1)", "pytest (>=5.2)", "pytest-rerunfailures", "setuptools", "tqdm"]
 graphics = ["matplotlib (>=1.2.1)"]
 ipython = ["ipython"]
-runtime-compilation = ["cython (>=0.29.20,<3.0.0)"]
+mpi = ["mpi4py"]
+runtime-compilation = ["cython (>=0.29.20)", "cython (>=0.29.20,<3.0.0)", "filelock", "setuptools"]
 semidefinite = ["cvxopt", "cvxpy (>=1.0)"]
 tests = ["pytest (>=5.2)", "pytest-rerunfailures"]
 
@@ -4815,45 +4806,45 @@ tests = ["black (>=24.3.0)", "matplotlib (>=3.3.4)", "mypy (>=1.9)", "numpydoc (
 
 [[package]]
 name = "scipy"
-version = "1.12.0"
+version = "1.13.1"
 description = "Fundamental algorithms for scientific computing in Python"
 optional = false
 python-versions = ">=3.9"
 files = [
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-]
-
-[package.dependencies]
-numpy = ">=1.22.4,<1.29.0"
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+    {file = "scipy-1.13.1-cp311-cp311-macosx_12_0_arm64.whl", hash = "sha256:54f430b00f0133e2224c3ba42b805bfd0086fe488835effa33fa291561932326"},
+    {file = "scipy-1.13.1-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:e89369d27f9e7b0884ae559a3a956e77c02114cc60a6058b4e5011572eea9299"},
+    {file = "scipy-1.13.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:a78b4b3345f1b6f68a763c6e25c0c9a23a9fd0f39f5f3d200efe8feda560a5fa"},
+    {file = "scipy-1.13.1-cp311-cp311-musllinux_1_1_x86_64.whl", hash = "sha256:45484bee6d65633752c490404513b9ef02475b4284c4cfab0ef946def50b3f59"},
+    {file = "scipy-1.13.1-cp311-cp311-win_amd64.whl", hash = "sha256:5713f62f781eebd8d597eb3f88b8bf9274e79eeabf63afb4a737abc6c84ad37b"},
+    {file = "scipy-1.13.1-cp312-cp312-macosx_10_9_x86_64.whl", hash = "sha256:5d72782f39716b2b3509cd7c33cdc08c96f2f4d2b06d51e52fb45a19ca0c86a1"},
+    {file = "scipy-1.13.1-cp312-cp312-macosx_12_0_arm64.whl", hash = "sha256:017367484ce5498445aade74b1d5ab377acdc65e27095155e448c88497755a5d"},
+    {file = "scipy-1.13.1-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:949ae67db5fa78a86e8fa644b9a6b07252f449dcf74247108c50e1d20d2b4627"},
+    {file = "scipy-1.13.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:de3ade0e53bc1f21358aa74ff4830235d716211d7d077e340c7349bc3542e884"},
+    {file = "scipy-1.13.1-cp312-cp312-musllinux_1_1_x86_64.whl", hash = "sha256:2ac65fb503dad64218c228e2dc2d0a0193f7904747db43014645ae139c8fad16"},
+    {file = "scipy-1.13.1-cp312-cp312-win_amd64.whl", hash = "sha256:cdd7dacfb95fea358916410ec61bbc20440f7860333aee6d882bb8046264e949"},
+    {file = "scipy-1.13.1-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:436bbb42a94a8aeef855d755ce5a465479c721e9d684de76bf61a62e7c2b81d5"},
+    {file = "scipy-1.13.1-cp39-cp39-macosx_12_0_arm64.whl", hash = "sha256:8335549ebbca860c52bf3d02f80784e91a004b71b059e3eea9678ba994796a24"},
+    {file = "scipy-1.13.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:d533654b7d221a6a97304ab63c41c96473ff04459e404b83275b60aa8f4b7004"},
+    {file = "scipy-1.13.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:637e98dcf185ba7f8e663e122ebf908c4702420477ae52a04f9908707456ba4d"},
+    {file = "scipy-1.13.1-cp39-cp39-musllinux_1_1_x86_64.whl", hash = "sha256:a014c2b3697bde71724244f63de2476925596c24285c7a637364761f8710891c"},
+    {file = "scipy-1.13.1-cp39-cp39-win_amd64.whl", hash = "sha256:392e4ec766654852c25ebad4f64e4e584cf19820b980bc04960bca0b0cd6eaa2"},
+    {file = "scipy-1.13.1.tar.gz", hash = "sha256:095a87a0312b08dfd6a6155cbbd310a8c51800fc931b8c0b84003014b874ed3c"},
+]
+
+[package.dependencies]
+numpy = ">=1.22.4,<2.3"
 
 [package.extras]
-dev = ["click", "cython-lint (>=0.12.2)", "doit (>=0.36.0)", "mypy", "pycodestyle", "pydevtool", "rich-click", "ruff", "types-psutil", "typing_extensions"]
-doc = ["jupytext", "matplotlib (>2)", "myst-nb", "numpydoc", "pooch", "pydata-sphinx-theme (==0.9.0)", "sphinx (!=4.1.0)", "sphinx-design (>=0.2.0)"]
-test = ["asv", "gmpy2", "hypothesis", "mpmath", "pooch", "pytest", "pytest-cov", "pytest-timeout", "pytest-xdist", "scikit-umfpack", "threadpoolctl"]
+dev = ["cython-lint (>=0.12.2)", "doit (>=0.36.0)", "mypy", "pycodestyle", "pydevtool", "rich-click", "ruff", "types-psutil", "typing_extensions"]
+doc = ["jupyterlite-pyodide-kernel", "jupyterlite-sphinx (>=0.12.0)", "jupytext", "matplotlib (>=3.5)", "myst-nb", "numpydoc", "pooch", "pydata-sphinx-theme (>=0.15.2)", "sphinx (>=5.0.0)", "sphinx-design (>=0.4.0)"]
+test = ["array-api-strict", "asv", "gmpy2", "hypothesis (>=6.30)", "mpmath", "pooch", "pytest", "pytest-cov", "pytest-timeout", "pytest-xdist", "scikit-umfpack", "threadpoolctl"]
 
 [[package]]
 name = "setuptools"
@@ -5791,7 +5782,7 @@ doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linke
 test = ["big-O", "importlib-resources", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more-itertools", "pytest (>=6,!=8.1.*)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"]
 
 [extras]
-emulator = ["qutip", "scipy"]
+emulator = ["qutip"]
 los = ["pyvisa-py", "qcodes", "qcodes_contrib_drivers"]
 qblox = ["pyvisa-py", "qblox-instruments", "qcodes", "qcodes_contrib_drivers"]
 qm = ["qm-qua", "qualang-tools"]
@@ -5801,4 +5792,4 @@ zh = ["laboneq"]
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.9,<3.12"
-content-hash = "e5a3a7b24638f1fbd6098e6003bc7e2e73b163013a6495578a2967740a8ed3c1"
+content-hash = "119c26fb9dd5316d2d9cbc98c7175238acd500e30816883420289be3e45e34d6"
diff --git a/pyproject.toml b/pyproject.toml
index e6867c86fe..c1ff7db123 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -25,6 +25,7 @@ python = ">=3.9,<3.12"
 qibo = ">=0.2.6"
 networkx = "^3.0"
 numpy = "^1.26.4"
+scipy = "^1.13.0"
 more-itertools = "^9.1.0"
 pydantic = "^2.6.4"
 qblox-instruments = { version = "0.12.0", optional = true }
@@ -36,10 +37,7 @@ qualang-tools = { version = "^0.15.0", optional = true }
 setuptools = { version = ">67.0.0", optional = true }
 laboneq = { version = "==2.25.0", optional = true }
 qibosoq = { version = ">=0.1.2,<0.2", optional = true }
-# TODO: unlock version
-qutip = { version = "4.7.5", optional = true }
-# TODO: remove this constraint, only needed for qutip 4.7.5
-scipy = { version = "<1.13.0", optional = true }
+qutip = { version = "^5.0.2", optional = true }
 
 [tool.poetry.group.dev]
 optional = true
@@ -67,7 +65,7 @@ qcodes_contrib_drivers = "0.18.0"
 qibosoq = ">=0.1.2,<0.2"
 qualang-tools = "^0.15.0"
 laboneq = "==2.25.0"
-qutip = "^4.7.5"
+qutip = "^5.0.2"
 
 [tool.poetry.group.tests]
 optional = true
@@ -90,7 +88,7 @@ qm = ["qm-qua", "qualang-tools"]
 zh = ["laboneq"]
 rfsoc = ["qibosoq"]
 los = ["qcodes", "qcodes_contrib_drivers", "pyvisa-py"]
-emulator = ["qutip", "scipy"]
+emulator = ["qutip"]
 
 
 [tool.poe.tasks]

From 7cbafde44543d01ebe1c9d064291c4de60d57184 Mon Sep 17 00:00:00 2001
From: Alessandro Candido <candido.ale@gmail.com>
Date: Wed, 26 Jun 2024 01:04:35 +0200
Subject: [PATCH 17/22] fix: Update qutip imports to new major

---
 src/qibolab/instruments/emulator/engines/qutip_engine.py | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/src/qibolab/instruments/emulator/engines/qutip_engine.py b/src/qibolab/instruments/emulator/engines/qutip_engine.py
index f290d43e26..ab3bc244c9 100644
--- a/src/qibolab/instruments/emulator/engines/qutip_engine.py
+++ b/src/qibolab/instruments/emulator/engines/qutip_engine.py
@@ -10,8 +10,8 @@
 
 import numpy as np
 from qutip import Options, Qobj, basis, expect, ket2dm, mesolve, ptrace
-from qutip.operators import identity as Id
-from qutip.tensor import tensor
+from qutip.core.operators import identity as Id
+from qutip.core.tensor import tensor
 from qutip.ui.progressbar import EnhancedTextProgressBar
 
 from qibolab.instruments.emulator.engines.generic import (

From 7b2d3025e8e6647a91c3a6a215925f780178c071 Mon Sep 17 00:00:00 2001
From: Alessandro Candido <candido.ale@gmail.com>
Date: Wed, 26 Jun 2024 11:07:17 +0200
Subject: [PATCH 18/22] ci: Attempt to upgrade macos to ARM

QuTiP 5.0.2 finally supports ARM... and only that

QuTiP 5.0.0 and 5.0.1 only support macos x86_64
---
 .github/workflows/deploy.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml
index 3c38e8bb2e..94950834c2 100644
--- a/.github/workflows/deploy.yml
+++ b/.github/workflows/deploy.yml
@@ -11,8 +11,8 @@ jobs:
   build:
     strategy:
       matrix:
-        os: [ubuntu-latest, macos-13, windows-latest]
-        python-version: [3.9, '3.10', '3.11']
+        os: [ubuntu-latest, macos-latest, windows-latest]
+        python-version: [3.9, "3.10", "3.11"]
     uses: qiboteam/workflows/.github/workflows/deploy-pip-poetry.yml@main
     with:
       os: ${{ matrix.os }}

From da5b70c8725d737a2419fad57ec3dbbe0f8e3298 Mon Sep 17 00:00:00 2001
From: Alessandro Candido <candido.ale@gmail.com>
Date: Wed, 26 Jun 2024 18:25:38 +0200
Subject: [PATCH 19/22] fix: Fix qubit pair class construction, to account for
 new optional attributes

---
 src/qibolab/serialize.py | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/src/qibolab/serialize.py b/src/qibolab/serialize.py
index 9051f98b22..ad32747aeb 100644
--- a/src/qibolab/serialize.py
+++ b/src/qibolab/serialize.py
@@ -168,7 +168,9 @@ def register_gates(
         q0, q1 = tuple(int(q) if q.isdigit() else q for q in pair.split("-"))
         native_gates = _load_two_qubit_natives(qubits, couplers, gatedict)
         coupler = pairs[(q0, q1)].coupler
-        pairs[(q0, q1)] = QubitPair(qubits[q0], qubits[q1], coupler, native_gates)
+        pairs[(q0, q1)] = QubitPair(
+            qubits[q0], qubits[q1], coupler=coupler, native_gates=native_gates
+        )
         if native_gates.symmetric:
             pairs[(q1, q0)] = pairs[(q0, q1)]
 

From 1bb88e412c7bdf96d816ae82ea25b3d5af2769e0 Mon Sep 17 00:00:00 2001
From: Alessandro Candido <candido.ale@gmail.com>
Date: Wed, 26 Jun 2024 18:34:22 +0200
Subject: [PATCH 20/22] test: Temporarily ignore emulator tests

---
 pyproject.toml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pyproject.toml b/pyproject.toml
index c1ff7db123..826b5ecc48 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -111,4 +111,5 @@ addopts = [
   '--cov-report=xml',
   '--cov-report=html',
   '-m not qpu',
+  '-k not emulator',
 ]

From fe98b1416f7fb64d01865fdda8a9f15794363b12 Mon Sep 17 00:00:00 2001
From: Alessandro Candido <candido.ale@gmail.com>
Date: Wed, 26 Jun 2024 18:43:41 +0200
Subject: [PATCH 21/22] docs: Comment emulator doc test

---
 doc/source/main-documentation/qibolab.rst | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/doc/source/main-documentation/qibolab.rst b/doc/source/main-documentation/qibolab.rst
index 046813cdc8..3903108dac 100644
--- a/doc/source/main-documentation/qibolab.rst
+++ b/doc/source/main-documentation/qibolab.rst
@@ -127,9 +127,9 @@ will create a dummy platform that also has coupler qubits.
 Emulator platform
 ^^^^^^^^^^^^^^^^^
 
-QiboLab supports the use of emulators to simulate the behavior of quantum devices. It uses :class:`qibolab.instruments.emulator.pulse_simulator.PulseSimulator`, which is a controller that utilizes a simulation engine to numerically solve the dynamics of the device in the presence of control pulse sequences specified by :class:`qibolab.pulses.PulseSequence`. The emulator platform for a specific device requires its own platform folder and can be initialized in the same way as any other real platforms:
+QiboLab supports the use of emulators to simulate the behavior of quantum devices. It uses :class:`qibolab.instruments.emulator.pulse_simulator.PulseSimulator`, which is a controller that utilizes a simulation engine to numerically solve the dynamics of the device in the presence of control pulse sequences specified by :class:`qibolab.pulses.PulseSequence`. The emulator platform for a specific device requires its own platform folder and can be initialized in the same way as any other real platforms::
 
-.. testcode:: python_emulator
+    # .. testcode:: python_emulator
 
     import os
     from pathlib import Path

From 1b80394d94c8a5a70aca9b23165c8ad6b5429ec0 Mon Sep 17 00:00:00 2001
From: Alessandro Candido <candido.ale@gmail.com>
Date: Wed, 26 Jun 2024 19:19:46 +0200
Subject: [PATCH 22/22] ci: Upgrade all workflows to macos arm

---
 .github/workflows/rules.yml   | 4 ++--
 .github/workflows/rustapi.yml | 2 +-
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/rules.yml b/.github/workflows/rules.yml
index eab77d20f1..54045c8b37 100644
--- a/.github/workflows/rules.yml
+++ b/.github/workflows/rules.yml
@@ -11,8 +11,8 @@ jobs:
   build:
     strategy:
       matrix:
-        os: [ubuntu-latest, macos-13, windows-latest]
-        python-version: [3.9, '3.10', '3.11']
+        os: [ubuntu-latest, macos-latest, windows-latest]
+        python-version: [3.9, "3.10", "3.11"]
     uses: qiboteam/workflows/.github/workflows/rules-poetry.yml@main
     with:
       os: ${{ matrix.os }}
diff --git a/.github/workflows/rustapi.yml b/.github/workflows/rustapi.yml
index 8f49712533..ed69c5a83f 100644
--- a/.github/workflows/rustapi.yml
+++ b/.github/workflows/rustapi.yml
@@ -9,7 +9,7 @@ jobs:
   tests:
     strategy:
       matrix:
-        os: [ubuntu-latest, macos-13]
+        os: [ubuntu-latest, macos-latest]
     runs-on: ${{ matrix.os }}
 
     steps: