From fd2a1c878c7c2fb58edcec0121fd9e363e4a2e1f Mon Sep 17 00:00:00 2001 From: MansorY Date: Thu, 3 Apr 2025 17:11:51 +0300 Subject: [PATCH 1/2] initial commit --- engine/clients/clickhouse/__init__.py | 9 + engine/clients/clickhouse/config.py | 17 + engine/clients/clickhouse/configure.py | 39 ++ engine/clients/clickhouse/parser.py | 46 ++ engine/clients/clickhouse/search.py | 42 ++ engine/clients/clickhouse/upload.py | 59 +++ engine/clients/client_factory.py | 11 + .../docker-compose.yaml | 22 + .../clickhouse-single-node.json | 90 ++++ poetry.lock | 475 +++++++++++++++++- pyproject.toml | 1 + 11 files changed, 788 insertions(+), 23 deletions(-) create mode 100644 engine/clients/clickhouse/__init__.py create mode 100644 engine/clients/clickhouse/config.py create mode 100644 engine/clients/clickhouse/configure.py create mode 100644 engine/clients/clickhouse/parser.py create mode 100644 engine/clients/clickhouse/search.py create mode 100644 engine/clients/clickhouse/upload.py create mode 100644 engine/servers/clickhouse-single-node/docker-compose.yaml create mode 100644 experiments/configurations/clickhouse-single-node.json diff --git a/engine/clients/clickhouse/__init__.py b/engine/clients/clickhouse/__init__.py new file mode 100644 index 00000000..21b26bcb --- /dev/null +++ b/engine/clients/clickhouse/__init__.py @@ -0,0 +1,9 @@ +from engine.clients.clickhouse.search import CHVectorSearcher +from engine.clients.clickhouse.upload import CHVectorUploader +from engine.clients.clickhouse.configure import CHVectorConfigurator + +__all__ = [ + 'CHVectorUploader', + 'CHVectorSearcher', + 'CHVectorConfigurator' +] diff --git a/engine/clients/clickhouse/config.py b/engine/clients/clickhouse/config.py new file mode 100644 index 00000000..39b3ef2c --- /dev/null +++ b/engine/clients/clickhouse/config.py @@ -0,0 +1,17 @@ +import os + + +CLICKHOUSE_PORT = int(os.getenv("CLICKHOUSE_PORT", 8123)) +CLICKHOUSE_HOST = os.getenv("CLICKHOUSE_HOST", "localhost") +CLICKHOUSE_USER = os.getenv("CLICKHOUSE_USER", "clickhouse") +CLICKHOUSE_PASSWORD = os.getenv("CLICKHOUSE_PASSWORD", "passwd") + + +def get_db_config(connection_params): + return { + "host": CLICKHOUSE_HOST, + "port": CLICKHOUSE_PORT, + "user": CLICKHOUSE_USER, + "password": CLICKHOUSE_PASSWORD, + **connection_params, + } diff --git a/engine/clients/clickhouse/configure.py b/engine/clients/clickhouse/configure.py new file mode 100644 index 00000000..83359916 --- /dev/null +++ b/engine/clients/clickhouse/configure.py @@ -0,0 +1,39 @@ +from clickhouse_connect import driver +import clickhouse_connect + +from benchmark.dataset import Dataset +from engine.base_client import IncompatibilityError +from engine.base_client.configure import BaseConfigurator +from engine.base_client.distances import Distance +from engine.clients.clickhouse.config import get_db_config + + +class CHVectorConfigurator(BaseConfigurator): + def __init__(self, host, collection_params: dict, connection_params: dict): + super().__init__(host, collection_params, connection_params) + self.client = clickhouse_connect.driver.create_client(**get_db_config(connection_params)) + print("configure connection created") + + + def clean(self): + self.client.command( + cmd="DROP TABLE IF EXISTS items;", + ) + + def recreate(self, dataset: Dataset, collection_params): + if dataset.config.distance == Distance.DOT: + raise IncompatibilityError + + self.client.command( + cmd=f"""CREATE TABLE items ( + id UInt64, + embedding Array(Float64) + ) + ENGINE = MergeTree() + ORDER BY id + ;""" + ) + self.client.close() + + def delete_client(self): + self.client.close() diff --git a/engine/clients/clickhouse/parser.py b/engine/clients/clickhouse/parser.py new file mode 100644 index 00000000..a17a94f3 --- /dev/null +++ b/engine/clients/clickhouse/parser.py @@ -0,0 +1,46 @@ +import json +from typing import Any, List, Optional + +from engine.base_client import IncompatibilityError +from engine.base_client.parser import BaseConditionParser, FieldValue + + +class CHVectorConditionParser(BaseConditionParser): + def build_condition( + self, and_subfilters: Optional[List[Any]], or_subfilters: Optional[List[Any]] + ) -> Optional[Any]: + clauses = [] + if or_subfilters is not None and len(or_subfilters) > 0: + clauses.append(f"( {' OR '.join(or_subfilters)} )") + if and_subfilters is not None and len(and_subfilters) > 0: + clauses.append(f"( {' AND '.join(and_subfilters)} )") + + return " AND ".join(clauses) + + def build_exact_match_filter(self, field_name: str, value: FieldValue) -> Any: + return f"{field_name} == {json.dumps(value)}" + + def build_range_filter( + self, + field_name: str, + lt: Optional[FieldValue], + gt: Optional[FieldValue], + lte: Optional[FieldValue], + gte: Optional[FieldValue], + ) -> Any: + clauses = [] + if lt is not None: + clauses.append(f"{field_name} < {lt}") + if gt is not None: + clauses.append(f"{field_name} > {gt}") + if lte is not None: + clauses.append(f"{field_name} <= {lte}") + if gte is not None: + clauses.append(f"{field_name} >= {gte}") + return f"( {' AND '.join(clauses)} )" + + def build_geo_filter( + self, field_name: str, lat: float, lon: float, radius: float + ) -> Any: + # TODO: Implement this + raise IncompatibilityError diff --git a/engine/clients/clickhouse/search.py b/engine/clients/clickhouse/search.py new file mode 100644 index 00000000..98e31b30 --- /dev/null +++ b/engine/clients/clickhouse/search.py @@ -0,0 +1,42 @@ +from typing import List, Tuple +import clickhouse_connect + +import numpy as np +from clickhouse_connect.driver.query import QueryResult +66 +from dataset_reader.base_reader import Query +from engine.base_client.distances import Distance +from engine.base_client.search import BaseSearcher +from engine.clients.clickhouse.config import get_db_config +from engine.clients.clickhouse.parser import CHVectorConditionParser + + +class CHVectorSearcher(BaseSearcher): + distance = None + search_params = {} + parser = CHVectorConditionParser() + + @classmethod + def init_client(cls, host, distance, connection_params: dict, search_params: dict): + cls.client = clickhouse_connect.driver.create_client(**get_db_config(connection_params)) + if distance == Distance.COSINE: + cls.query: str = "SELECT id, cosineDistance(embedding, {vector:Array(Float64)}) AS _score FROM items ORDER BY _score LIMIT {top:UInt8} OFFSET 1" + elif distance == Distance.L2: + cls.query: str = "SELECT id, L2Distance(embedding, {vector:Array(Float64)}) AS _score FROM items ORDER BY _score LIMIT {top:UInt8} OFFSET 1" + else: + raise NotImplementedError(f"Unsupported distance metric {cls.distance}") + + @classmethod + def search_one(cls, query: Query, top) -> List[Tuple[int, float]]: + # TODO: Use query.metaconditions for datasets with filtering + query_summary: QueryResult = cls.client.query( + cls.query, parameters={'vector': query.vector, 'top':top} + ) + #print(type(query_summary.result_rows)) + #print(type(query_summary.result_rows[0])) + #print(type(query_summary.result_rows[0][0])) + return query_summary.result_rows + + @classmethod + def delete_client(cls): + cls.client.close() diff --git a/engine/clients/clickhouse/upload.py b/engine/clients/clickhouse/upload.py new file mode 100644 index 00000000..a1b077cd --- /dev/null +++ b/engine/clients/clickhouse/upload.py @@ -0,0 +1,59 @@ +from typing import List + +import numpy as np +import clickhouse_connect +from clickhouse_connect.datatypes.container import Array +from clickhouse_connect.datatypes.numeric import Float64, UInt64 + +from dataset_reader.base_reader import Record +from engine.base_client import IncompatibilityError +from engine.base_client.distances import Distance +from engine.base_client.upload import BaseUploader +from engine.clients.clickhouse.config import get_db_config + + +class CHVectorUploader(BaseUploader): + DISTANCE_MAPPING = { + Distance.L2: "vector_l2_ops", + Distance.COSINE: "vector_cosine_ops", + } + client = None + upload_params = {} + + @classmethod + def init_client(cls, host, distance, connection_params, upload_params): + cls.client = clickhouse_connect.driver.create_client(**get_db_config(connection_params)) + cls.upload_params = upload_params + + @classmethod + def upload_batch(cls, batch: List[Record]): + ids, vectors = [], [] + for record in batch: + ids.append(record.id) + vectors.append(record.vector) + #array_vectors = np.array(vectors) + both_columns = [ids, vectors] + + + cls.client.insert(table='items', data=both_columns, + column_names=['id', 'embedding'], + column_type_names=['UInt64', 'Array(Float64)'], column_oriented=True) + #print(query_summary) + #return query_summary + + @classmethod + def post_upload(cls, distance): + try: + hnsw_distance_type = cls.DISTANCE_MAPPING[distance] + except KeyError: + raise IncompatibilityError(f"Unsupported distance metric: {distance}") + + #cls.conn.execute( + # f"CREATE INDEX ON items USING hnsw (embedding {hnsw_distance_type}) WITH (m = {cls.upload_params['hnsw_config']['m']}, ef_construction = {cls.upload_params['hnsw_config']['ef_construct']})" + #) + return {} + + @classmethod + def delete_client(cls): + cls.client.close() + diff --git a/engine/clients/client_factory.py b/engine/clients/client_factory.py index a74df2ab..e135af16 100644 --- a/engine/clients/client_factory.py +++ b/engine/clients/client_factory.py @@ -7,11 +7,19 @@ BaseSearcher, BaseUploader, ) + from engine.clients.elasticsearch import ( ElasticConfigurator, ElasticSearcher, ElasticUploader, ) + +from engine.clients.clickhouse import ( + CHVectorConfigurator, + CHVectorSearcher, + CHVectorUploader, +) + from engine.clients.milvus import MilvusConfigurator, MilvusSearcher, MilvusUploader from engine.clients.opensearch import ( OpenSearchConfigurator, @@ -39,6 +47,7 @@ "opensearch": OpenSearchConfigurator, "redis": RedisConfigurator, "pgvector": PgVectorConfigurator, + "clickhouse": CHVectorConfigurator } ENGINE_UPLOADERS = { @@ -49,6 +58,7 @@ "opensearch": OpenSearchUploader, "redis": RedisUploader, "pgvector": PgVectorUploader, + "clickhouse": CHVectorUploader } ENGINE_SEARCHERS = { @@ -59,6 +69,7 @@ "opensearch": OpenSearchSearcher, "redis": RedisSearcher, "pgvector": PgVectorSearcher, + "clickhouse": CHVectorSearcher } diff --git a/engine/servers/clickhouse-single-node/docker-compose.yaml b/engine/servers/clickhouse-single-node/docker-compose.yaml new file mode 100644 index 00000000..d61221ce --- /dev/null +++ b/engine/servers/clickhouse-single-node/docker-compose.yaml @@ -0,0 +1,22 @@ +services: + clickhouse: + container_name: clickhouse + user: "clickhouse:clickhouse" + hostname: clickhouse + image: clickhouse/clickhouse-server:25.1-alpine + environment: + - CLICKHOUSE_DB=clickhouse + - CLICKHOUSE_USER=clickhouse + - CLICKHOUSE_PASSWORD=passwd + - CLICKHOUSE_PORT=8123 + ports: + - 8123:8123 + logging: + driver: "json-file" + options: + max-file: 1 + max-size: 10m + deploy: + resources: + limits: + memory: 9Gb diff --git a/experiments/configurations/clickhouse-single-node.json b/experiments/configurations/clickhouse-single-node.json new file mode 100644 index 00000000..0982a188 --- /dev/null +++ b/experiments/configurations/clickhouse-single-node.json @@ -0,0 +1,90 @@ +[ + { + "name": "clickhouse-default", + "engine": "clickhouse", + "connection_params": {}, + "collection_params": {}, + "search_params": [ + { "parallel": 8, "config": { "hnsw_ef": 128 } } + ], + "upload_params": { "parallel": 16, "batch_size": 4096} + }, + { + "name": "clickhouse-parallel", + "engine": "clickhouse", + "connection_params": {}, + "collection_params": {}, + "search_params": [ + { "parallel": 8, "config": { "hnsw_ef": 128 } }, + { "parallel": 16, "config": { "hnsw_ef": 128 } }, + { "parallel": 100, "config": { "hnsw_ef": 128 } } + ], + "upload_params": { "parallel": 1, "batch_size": 2048} + }, + { + "name": "clickhouse-m-16-ef-128", + "engine": "clickhouse", + "connection_params": {}, + "collection_params": {}, + "search_params": [ + { "parallel": 1, "config": { "hnsw_ef": 64 } }, { "parallel": 1, "config": { "hnsw_ef": 128 } }, { "parallel": 1, "config": { "hnsw_ef": 256 } }, { "parallel": 1, "config": { "hnsw_ef": 512 } }, + { "parallel": 100, "config": { "hnsw_ef": 64 } }, { "parallel": 100, "config": { "hnsw_ef": 128 } }, { "parallel": 100, "config": { "hnsw_ef": 256 } }, { "parallel": 100, "config": { "hnsw_ef": 512 } } + ], + "upload_params": { "parallel": 16} + }, + { + "name": "clickhouse-m-32-ef-128", + "engine": "clickhouse", + "connection_params": {}, + "collection_params": {}, + "search_params": [ + { "parallel": 1, "config": { "hnsw_ef": 64 } }, { "parallel": 1, "config": { "hnsw_ef": 128 } }, { "parallel": 1, "config": { "hnsw_ef": 256 } }, { "parallel": 1, "config": { "hnsw_ef": 512 } }, + { "parallel": 100, "config": { "hnsw_ef": 64 } }, { "parallel": 100, "config": { "hnsw_ef": 128 } }, { "parallel": 100, "config": { "hnsw_ef": 256 } }, { "parallel": 100, "config": { "hnsw_ef": 512 } } + ], + "upload_params": { "parallel": 16 } + }, + { + "name": "clickhouse-m-32-ef-256", + "engine": "clickhouse", + "connection_params": {}, + "collection_params": {}, + "search_params": [ + { "parallel": 1, "config": { "hnsw_ef": 64 } }, { "parallel": 1, "config": { "hnsw_ef": 128 } }, { "parallel": 1, "config": { "hnsw_ef": 256 } }, { "parallel": 1, "config": { "hnsw_ef": 512 } }, + { "parallel": 100, "config": { "hnsw_ef": 64 } }, { "parallel": 100, "config": { "hnsw_ef": 128 } }, { "parallel": 100, "config": { "hnsw_ef": 256 } }, { "parallel": 100, "config": { "hnsw_ef": 512 } } + ], + "upload_params": { "parallel": 16 } + }, + { + "name": "clickhouse-m-32-ef-512", + "engine": "clickhouse", + "connection_params": {}, + "collection_params": {}, + "search_params": [ + { "parallel": 1, "config": { "hnsw_ef": 64 } }, { "parallel": 1, "config": { "hnsw_ef": 128 } }, { "parallel": 1, "config": { "hnsw_ef": 256 } }, { "parallel": 1, "config": { "hnsw_ef": 512 } }, + { "parallel": 100, "config": { "hnsw_ef": 64 } }, { "parallel": 100, "config": { "hnsw_ef": 128 } }, { "parallel": 100, "config": { "hnsw_ef": 256 } }, { "parallel": 100, "config": { "hnsw_ef": 512 } } + ], + "upload_params": { "parallel": 16 } + }, + { + "name": "clickhouse-m-64-ef-256", + "engine": "clickhouse", + "connection_params": {}, + "collection_params": {}, + "search_params": [ + { "parallel": 1, "config": { "hnsw_ef": 64 } }, { "parallel": 1, "config": { "hnsw_ef": 128 } }, { "parallel": 1, "config": { "hnsw_ef": 256 } }, { "parallel": 1, "config": { "hnsw_ef": 512 } }, + { "parallel": 100, "config": { "hnsw_ef": 64 } }, { "parallel": 100, "config": { "hnsw_ef": 128 } }, { "parallel": 100, "config": { "hnsw_ef": 256 } }, { "parallel": 100, "config": { "hnsw_ef": 512 } } + ], + "upload_params": { "parallel": 16} + }, + { + "name": "clickhouse-m-64-ef-512", + "engine": "clickhouse", + "connection_params": {}, + "collection_params": {}, + "search_params": [ + { "parallel": 1, "config": { "hnsw_ef": 64 } }, { "parallel": 1, "config": { "hnsw_ef": 128 } }, { "parallel": 1, "config": { "hnsw_ef": 256 } }, { "parallel": 1, "config": { "hnsw_ef": 512 } }, + { "parallel": 100, "config": { "hnsw_ef": 64 } }, { "parallel": 100, "config": { "hnsw_ef": 128 } }, { "parallel": 100, "config": { "hnsw_ef": 256 } }, { "parallel": 100, "config": { "hnsw_ef": 512 } } + ], + "upload_params": { "parallel": 16 } + } +] diff --git a/poetry.lock b/poetry.lock index 65267b4f..c81165e8 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. +# This file is automatically @generated by Poetry 2.1.2 and should not be changed by hand. [[package]] name = "annotated-types" @@ -6,6 +6,7 @@ version = "0.7.0" description = "Reusable constraint types to use with typing.Annotated" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "annotated_types-0.7.0-py3-none-any.whl", hash = "sha256:1f02e8b43a8fbbc3f3e0d4f0f4bfc8131bcb4eebe8849b8e5c773f3a1c582a53"}, {file = "annotated_types-0.7.0.tar.gz", hash = "sha256:aff07c09a53a08bc8cfccb9c85b05f1aa9a2a6f23728d790723543408344ce89"}, @@ -20,6 +21,7 @@ version = "4.5.2" description = "High level compatibility layer for multiple asynchronous event loop implementations" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "anyio-4.5.2-py3-none-any.whl", hash = "sha256:c011ee36bc1e8ba40e5a81cb9df91925c218fe9b778554e0b56a21e1b5d4716f"}, {file = "anyio-4.5.2.tar.gz", hash = "sha256:23009af4ed04ce05991845451e11ef02fc7c5ed29179ac9a420e5ad0ac7ddc5b"}, @@ -33,7 +35,7 @@ typing-extensions = {version = ">=4.1", markers = "python_version < \"3.11\""} [package.extras] doc = ["Sphinx (>=7.4,<8.0)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"] -test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "truststore (>=0.9.1)", "uvloop (>=0.21.0b1)"] +test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "truststore (>=0.9.1) ; 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Open, modern and actively maintained alternative to Chardet." optional = false python-versions = ">=3.7" +groups = ["main"] files = [ {file = "charset_normalizer-3.4.1-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:91b36a978b5ae0ee86c394f5a54d6ef44db1de0815eb43de826d41d21e4af3de"}, {file = "charset_normalizer-3.4.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:7461baadb4dc00fd9e0acbe254e3d7d2112e7f92ced2adc96e54ef6501c5f176"}, @@ -334,6 +349,7 @@ version = "8.1.8" description = "Composable command line interface toolkit" optional = false python-versions = ">=3.7" +groups = ["main"] files = [ {file = "click-8.1.8-py3-none-any.whl", hash = "sha256:63c132bbbed01578a06712a2d1f497bb62d9c1c0d329b7903a866228027263b2"}, {file = "click-8.1.8.tar.gz", hash = "sha256:ed53c9d8990d83c2a27deae68e4ee337473f6330c040a31d4225c9574d16096a"}, @@ -342,16 +358,115 @@ files = [ [package.dependencies] colorama = {version = "*", markers = "platform_system == 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python-versions = "*" +groups = ["main"] files = [ {file = "pure_eval-0.2.3-py3-none-any.whl", hash = "sha256:1db8e35b67b3d218d818ae653e27f06c3aa420901fa7b081ca98cbedc874e0d0"}, {file = "pure_eval-0.2.3.tar.gz", hash = "sha256:5f4e983f40564c576c7c8635ae88db5956bb2229d7e9237d03b3c0b0190eaf42"}, @@ -1395,6 +1671,7 @@ version = "2.22" description = "C parser in Python" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "pycparser-2.22-py3-none-any.whl", hash = "sha256:c3702b6d3dd8c7abc1afa565d7e63d53a1d0bd86cdc24edd75470f4de499cfcc"}, {file = "pycparser-2.22.tar.gz", hash = "sha256:491c8be9c040f5390f5bf44a5b07752bd07f56edf992381b05c701439eec10f6"}, @@ -1406,6 +1683,7 @@ version = "2.10.6" description = "Data validation using Python type hints" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "pydantic-2.10.6-py3-none-any.whl", hash = "sha256:427d664bf0b8a2b34ff5dd0f5a18df00591adcee7198fbd71981054cef37b584"}, {file = 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python-versions = ">=3.8" +groups = ["main"] files = [ {file = "pygments-2.19.1-py3-none-any.whl", hash = "sha256:9ea1544ad55cecf4b8242fab6dd35a93bbce657034b0611ee383099054ab6d8c"}, {file = "pygments-2.19.1.tar.gz", hash = "sha256:61c16d2a8576dc0649d9f39e089b5f02bcd27fba10d8fb4dcc28173f7a45151f"}, @@ -1552,6 +1832,7 @@ version = "2.5.6" description = "Python Sdk for Milvus" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "pymilvus-2.5.6-py3-none-any.whl", hash = "sha256:19796f328278974f04632a1531e602070614f6ab0865cc97e27755f622e50a6d"}, {file = "pymilvus-2.5.6.tar.gz", hash = "sha256:2bea0b03ed9ac3daadb1b2df8e38aa5c8f4aabd00b23a4999abb4adaebf54f59"}, @@ -1581,6 +1862,7 @@ version = "7.4.4" description = "pytest: simple powerful testing with Python" optional = false python-versions = ">=3.7" +groups = ["dev"] files = [ {file = "pytest-7.4.4-py3-none-any.whl", hash = "sha256:b090cdf5ed60bf4c45261be03239c2c1c22df034fbffe691abe93cd80cea01d8"}, {file = 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"YAML parser and emitter for Python" optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "PyYAML-6.0.2-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:0a9a2848a5b7feac301353437eb7d5957887edbf81d56e903999a75a3d743086"}, {file = "PyYAML-6.0.2-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:29717114e51c84ddfba879543fb232a6ed60086602313ca38cce623c1d62cfbf"}, @@ -1729,6 +2017,7 @@ version = "1.12.1" description = "Client library for the Qdrant vector search engine" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "qdrant_client-1.12.1-py3-none-any.whl", hash = "sha256:b2d17ce18e9e767471368380dd3bbc4a0e3a0e2061fedc9af3542084b48451e0"}, {file = "qdrant_client-1.12.1.tar.gz", hash = "sha256:35e8e646f75b7b883b3d2d0ee4c69c5301000bba41c82aa546e985db0f1aeb72"}, @@ -1744,8 +2033,8 @@ pydantic = ">=1.10.8" urllib3 = ">=1.26.14,<3" [package.extras] -fastembed = ["fastembed (==0.3.6)"] -fastembed-gpu = ["fastembed-gpu (==0.3.6)"] +fastembed = ["fastembed (==0.3.6) ; python_version < \"3.13\""] +fastembed-gpu = ["fastembed-gpu (==0.3.6) ; python_version < \"3.13\""] [[package]] name = "redis" @@ -1753,6 +2042,7 @@ version = "5.2.1" description = "Python client for Redis database and key-value store" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "redis-5.2.1-py3-none-any.whl", hash = "sha256:ee7e1056b9aea0f04c6c2ed59452947f34c4940ee025f5dd83e6a6418b6989e4"}, {file = "redis-5.2.1.tar.gz", hash = "sha256:16f2e22dff21d5125e8481515e386711a34cbec50f0e44413dd7d9c060a54e0f"}, @@ -1771,6 +2061,7 @@ version = "2.32.3" description = "Python HTTP for Humans." optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "requests-2.32.3-py3-none-any.whl", hash = "sha256:70761cfe03c773ceb22aa2f671b4757976145175cdfca038c02654d061d6dcc6"}, {file = "requests-2.32.3.tar.gz", hash = "sha256:55365417734eb18255590a9ff9eb97e9e1da868d4ccd6402399eaf68af20a760"}, @@ -1792,6 +2083,8 @@ version = "70.0.0" description = "Easily download, build, install, upgrade, and uninstall Python packages" optional = false python-versions = ">=3.8" +groups = ["main"] +markers = "python_version == \"3.8\"" files = [ {file = "setuptools-70.0.0-py3-none-any.whl", hash = "sha256:54faa7f2e8d2d11bcd2c07bed282eef1046b5c080d1c32add737d7b5817b1ad4"}, {file = "setuptools-70.0.0.tar.gz", hash = "sha256:f211a66637b8fa059bb28183da127d4e86396c991a942b028c6650d4319c3fd0"}, @@ -1799,7 +2092,7 @@ files = [ [package.extras] docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "pyproject-hooks (!=1.1)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (>=1,<2)", "sphinx-reredirects", "sphinxcontrib-towncrier"] -testing = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "importlib-metadata", "ini2toml[lite] (>=0.14)", "jaraco.develop (>=7.21)", "jaraco.envs (>=2.2)", 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"mypy (==1.14.*)", "pytest-mypy"] [[package]] name = "six" @@ -1827,6 +2122,7 @@ version = "1.17.0" description = "Python 2 and 3 compatibility utilities" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7" +groups = ["main"] files = [ {file = "six-1.17.0-py2.py3-none-any.whl", hash = "sha256:4721f391ed90541fddacab5acf947aa0d3dc7d27b2e1e8eda2be8970586c3274"}, {file = "six-1.17.0.tar.gz", hash = "sha256:ff70335d468e7eb6ec65b95b99d3a2836546063f63acc5171de367e834932a81"}, @@ -1838,6 +2134,7 @@ version = "1.3.1" description = "Sniff out which async library your code is running under" optional = false python-versions = ">=3.7" +groups = ["main"] files = [ {file = "sniffio-1.3.1-py3-none-any.whl", hash = "sha256:2f6da418d1f1e0fddd844478f41680e794e6051915791a034ff65e5f100525a2"}, {file = "sniffio-1.3.1.tar.gz", hash = "sha256:f4324edc670a0f49750a81b895f35c3adb843cca46f0530f79fc1babb23789dc"}, @@ -1849,6 +2146,7 @@ version = "0.6.3" description = "Extract data from python stack frames and tracebacks for informative displays" optional = false python-versions = "*" +groups = ["main"] files = [ {file = "stack_data-0.6.3-py3-none-any.whl", hash = "sha256:d5558e0c25a4cb0853cddad3d77da9891a08cb85dd9f9f91b9f8cd66e511e695"}, {file = "stack_data-0.6.3.tar.gz", hash = "sha256:836a778de4fec4dcd1dcd89ed8abff8a221f58308462e1c4aa2a3cf30148f0b9"}, @@ -1868,6 +2166,7 @@ version = "1.1.2" description = "Timeout control decorator and context managers, raise any exception in another thread" optional = false python-versions = "*" +groups = ["main"] files = [ {file = "stopit-1.1.2.tar.gz", hash = "sha256:f7f39c583fd92027bd9d06127b259aee7a5b7945c1f1fa56263811e1e766996d"}, ] @@ -1878,6 +2177,8 @@ version = "2.2.1" description = "A lil' TOML parser" optional = false python-versions = ">=3.8" +groups = ["main", "dev"] +markers = "python_version <= \"3.10\"" files = [ {file = "tomli-2.2.1-cp311-cp311-macosx_10_9_x86_64.whl", hash = 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"sha256:9ed0579d3502c94b4b3732ac120375cda96f923114522847de4b3bb98b96b6b7"}, @@ -1955,6 +2258,7 @@ version = "0.6.1" description = "Typer, build great CLIs. Easy to code. Based on Python type hints." optional = false python-versions = ">=3.6" +groups = ["main"] files = [ {file = "typer-0.6.1-py3-none-any.whl", hash = "sha256:54b19e5df18654070a82f8c2aa1da456a4ac16a2a83e6dcd9f170e291c56338e"}, {file = "typer-0.6.1.tar.gz", hash = "sha256:2d5720a5e63f73eaf31edaa15f6ab87f35f0690f8ca233017d7d23d743a91d73"}, @@ -1975,6 +2279,7 @@ version = "4.13.0" description = "Backported and Experimental Type Hints for Python 3.8+" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "typing_extensions-4.13.0-py3-none-any.whl", hash = "sha256:c8dd92cc0d6425a97c18fbb9d1954e5ff92c1ca881a309c45f06ebc0b79058e5"}, {file = "typing_extensions-4.13.0.tar.gz", hash = "sha256:0a4ac55a5820789d87e297727d229866c9650f6521b64206413c4fbada24d95b"}, @@ -1986,6 +2291,7 @@ version = "1.9.3" description = "Functionality for types" optional = false python-versions = "*" +groups = ["main"] files = [ {file = "typish-1.9.3-py3-none-any.whl", hash = "sha256:03cfee5e6eb856dbf90244e18f4e4c41044c8790d5779f4e775f63f982e2f896"}, ] @@ -1999,6 +2305,7 @@ version = "2025.2" description = "Provider of IANA time zone data" optional = false python-versions = ">=2" +groups = ["main"] files = [ {file = "tzdata-2025.2-py2.py3-none-any.whl", hash = "sha256:1a403fada01ff9221ca8044d701868fa132215d84beb92242d9acd2147f667a8"}, {file = "tzdata-2025.2.tar.gz", hash = "sha256:b60a638fcc0daffadf82fe0f57e53d06bdec2f36c4df66280ae79bce6bd6f2b9"}, @@ -2010,6 +2317,7 @@ version = "5.10.0" description = "Ultra fast JSON encoder and decoder for Python" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "ujson-5.10.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:2601aa9ecdbee1118a1c2065323bda35e2c5a2cf0797ef4522d485f9d3ef65bd"}, {file = "ujson-5.10.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:348898dd702fc1c4f1051bc3aacbf894caa0927fe2c53e68679c073375f732cf"}, @@ -2097,14 +2405,16 @@ version = "1.26.20" description = "HTTP library with thread-safe connection pooling, file post, and more." optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7" +groups = ["main"] +markers = "python_version < \"3.10\"" files = [ {file = "urllib3-1.26.20-py2.py3-none-any.whl", hash = "sha256:0ed14ccfbf1c30a9072c7ca157e4319b70d65f623e91e7b32fadb2853431016e"}, {file = "urllib3-1.26.20.tar.gz", hash = "sha256:40c2dc0c681e47eb8f90e7e27bf6ff7df2e677421fd46756da1161c39ca70d32"}, ] [package.extras] -brotli = ["brotli (==1.0.9)", "brotli (>=1.0.9)", "brotlicffi (>=0.8.0)", "brotlipy (>=0.6.0)"] -secure = ["certifi", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "ipaddress", "pyOpenSSL (>=0.14)", "urllib3-secure-extra"] +brotli = ["brotli (==1.0.9) ; os_name != \"nt\" and python_version < \"3\" and platform_python_implementation == \"CPython\"", "brotli (>=1.0.9) ; python_version >= \"3\" and platform_python_implementation == \"CPython\"", "brotlicffi (>=0.8.0) ; (os_name != \"nt\" or python_version >= \"3\") and platform_python_implementation != \"CPython\"", "brotlipy (>=0.6.0) ; os_name == \"nt\" and python_version < \"3\""] +secure = ["certifi", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "ipaddress ; python_version == \"2.7\"", "pyOpenSSL (>=0.14)", "urllib3-secure-extra"] socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"] [[package]] @@ -2113,13 +2423,15 @@ version = "2.3.0" description = "HTTP library with thread-safe connection pooling, file post, and more." optional = false python-versions = ">=3.9" +groups = ["main"] +markers = "python_version >= \"3.10\"" files = [ {file = "urllib3-2.3.0-py3-none-any.whl", hash = "sha256:1cee9ad369867bfdbbb48b7dd50374c0967a0bb7710050facf0dd6911440e3df"}, {file = "urllib3-2.3.0.tar.gz", hash = "sha256:f8c5449b3cf0861679ce7e0503c7b44b5ec981bec0d1d3795a07f1ba96f0204d"}, ] [package.extras] -brotli = ["brotli (>=1.0.9)", "brotlicffi (>=0.8.0)"] +brotli = ["brotli (>=1.0.9) ; platform_python_implementation == \"CPython\"", "brotlicffi (>=0.8.0) ; platform_python_implementation != \"CPython\""] h2 = ["h2 (>=4,<5)"] socks = ["pysocks (>=1.5.6,!=1.5.7,<2.0)"] zstd = ["zstandard (>=0.18.0)"] @@ -2130,6 +2442,7 @@ version = "0.33.0" description = "Python Data Validation for Humans™" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "validators-0.33.0-py3-none-any.whl", hash = "sha256:134b586a98894f8139865953899fc2daeb3d0c35569552c5518f089ae43ed075"}, {file = "validators-0.33.0.tar.gz", hash = "sha256:535867e9617f0100e676a1257ba1e206b9bfd847ddc171e4d44811f07ff0bfbf"}, @@ -2144,6 +2457,7 @@ version = "20.30.0" description = "Virtual Python Environment builder" optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "virtualenv-20.30.0-py3-none-any.whl", hash = "sha256:e34302959180fca3af42d1800df014b35019490b119eba981af27f2fa486e5d6"}, {file = "virtualenv-20.30.0.tar.gz", hash = "sha256:800863162bcaa5450a6e4d721049730e7f2dae07720e0902b0e4040bd6f9ada8"}, @@ -2156,7 +2470,7 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Apr 2025 14:21:27 +0000 Subject: [PATCH 2/2] [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --- engine/clients/clickhouse/__init__.py | 8 ++----- engine/clients/clickhouse/config.py | 1 - engine/clients/clickhouse/configure.py | 8 +++---- engine/clients/clickhouse/search.py | 24 +++++++++++++-------- engine/clients/clickhouse/upload.py | 29 +++++++++++++------------- engine/clients/client_factory.py | 19 +++++++---------- 6 files changed, 44 insertions(+), 45 deletions(-) diff --git a/engine/clients/clickhouse/__init__.py b/engine/clients/clickhouse/__init__.py index 21b26bcb..7799440a 100644 --- a/engine/clients/clickhouse/__init__.py +++ b/engine/clients/clickhouse/__init__.py @@ -1,9 +1,5 @@ +from engine.clients.clickhouse.configure import CHVectorConfigurator from engine.clients.clickhouse.search import CHVectorSearcher from engine.clients.clickhouse.upload import CHVectorUploader -from engine.clients.clickhouse.configure import CHVectorConfigurator -__all__ = [ - 'CHVectorUploader', - 'CHVectorSearcher', - 'CHVectorConfigurator' -] +__all__ = ["CHVectorUploader", "CHVectorSearcher", "CHVectorConfigurator"] diff --git a/engine/clients/clickhouse/config.py b/engine/clients/clickhouse/config.py index 39b3ef2c..b0d1fb21 100644 --- a/engine/clients/clickhouse/config.py +++ b/engine/clients/clickhouse/config.py @@ -1,6 +1,5 @@ import os - CLICKHOUSE_PORT = int(os.getenv("CLICKHOUSE_PORT", 8123)) CLICKHOUSE_HOST = os.getenv("CLICKHOUSE_HOST", "localhost") CLICKHOUSE_USER = os.getenv("CLICKHOUSE_USER", "clickhouse") diff --git a/engine/clients/clickhouse/configure.py b/engine/clients/clickhouse/configure.py index 83359916..2aeb4f29 100644 --- a/engine/clients/clickhouse/configure.py +++ b/engine/clients/clickhouse/configure.py @@ -1,4 +1,3 @@ -from clickhouse_connect import driver import clickhouse_connect from benchmark.dataset import Dataset @@ -11,10 +10,11 @@ class CHVectorConfigurator(BaseConfigurator): def __init__(self, host, collection_params: dict, connection_params: dict): super().__init__(host, collection_params, connection_params) - self.client = clickhouse_connect.driver.create_client(**get_db_config(connection_params)) + self.client = clickhouse_connect.driver.create_client( + **get_db_config(connection_params) + ) print("configure connection created") - def clean(self): self.client.command( cmd="DROP TABLE IF EXISTS items;", @@ -25,7 +25,7 @@ def recreate(self, dataset: Dataset, collection_params): raise IncompatibilityError self.client.command( - cmd=f"""CREATE TABLE items ( + cmd="""CREATE TABLE items ( id UInt64, embedding Array(Float64) ) diff --git a/engine/clients/clickhouse/search.py b/engine/clients/clickhouse/search.py index 98e31b30..49616123 100644 --- a/engine/clients/clickhouse/search.py +++ b/engine/clients/clickhouse/search.py @@ -1,8 +1,8 @@ from typing import List, Tuple -import clickhouse_connect -import numpy as np +import clickhouse_connect from clickhouse_connect.driver.query import QueryResult + 66 from dataset_reader.base_reader import Query from engine.base_client.distances import Distance @@ -18,11 +18,17 @@ class CHVectorSearcher(BaseSearcher): @classmethod def init_client(cls, host, distance, connection_params: dict, search_params: dict): - cls.client = clickhouse_connect.driver.create_client(**get_db_config(connection_params)) + cls.client = clickhouse_connect.driver.create_client( + **get_db_config(connection_params) + ) if distance == Distance.COSINE: - cls.query: str = "SELECT id, cosineDistance(embedding, {vector:Array(Float64)}) AS _score FROM items ORDER BY _score LIMIT {top:UInt8} OFFSET 1" + cls.query: str = ( + "SELECT id, cosineDistance(embedding, {vector:Array(Float64)}) AS _score FROM items ORDER BY _score LIMIT {top:UInt8} OFFSET 1" + ) elif distance == Distance.L2: - cls.query: str = "SELECT id, L2Distance(embedding, {vector:Array(Float64)}) AS _score FROM items ORDER BY _score LIMIT {top:UInt8} OFFSET 1" + cls.query: str = ( + "SELECT id, L2Distance(embedding, {vector:Array(Float64)}) AS _score FROM items ORDER BY _score LIMIT {top:UInt8} OFFSET 1" + ) else: raise NotImplementedError(f"Unsupported distance metric {cls.distance}") @@ -30,11 +36,11 @@ def init_client(cls, host, distance, connection_params: dict, search_params: dic def search_one(cls, query: Query, top) -> List[Tuple[int, float]]: # TODO: Use query.metaconditions for datasets with filtering query_summary: QueryResult = cls.client.query( - cls.query, parameters={'vector': query.vector, 'top':top} + cls.query, parameters={"vector": query.vector, "top": top} ) - #print(type(query_summary.result_rows)) - #print(type(query_summary.result_rows[0])) - #print(type(query_summary.result_rows[0][0])) + # print(type(query_summary.result_rows)) + # print(type(query_summary.result_rows[0])) + # print(type(query_summary.result_rows[0][0])) return query_summary.result_rows @classmethod diff --git a/engine/clients/clickhouse/upload.py b/engine/clients/clickhouse/upload.py index a1b077cd..53a2ed12 100644 --- a/engine/clients/clickhouse/upload.py +++ b/engine/clients/clickhouse/upload.py @@ -1,9 +1,6 @@ from typing import List -import numpy as np import clickhouse_connect -from clickhouse_connect.datatypes.container import Array -from clickhouse_connect.datatypes.numeric import Float64, UInt64 from dataset_reader.base_reader import Record from engine.base_client import IncompatibilityError @@ -22,7 +19,9 @@ class CHVectorUploader(BaseUploader): @classmethod def init_client(cls, host, distance, connection_params, upload_params): - cls.client = clickhouse_connect.driver.create_client(**get_db_config(connection_params)) + cls.client = clickhouse_connect.driver.create_client( + **get_db_config(connection_params) + ) cls.upload_params = upload_params @classmethod @@ -31,15 +30,18 @@ def upload_batch(cls, batch: List[Record]): for record in batch: ids.append(record.id) vectors.append(record.vector) - #array_vectors = np.array(vectors) + # array_vectors = np.array(vectors) both_columns = [ids, vectors] - - cls.client.insert(table='items', data=both_columns, - column_names=['id', 'embedding'], - column_type_names=['UInt64', 'Array(Float64)'], column_oriented=True) - #print(query_summary) - #return query_summary + cls.client.insert( + table="items", + data=both_columns, + column_names=["id", "embedding"], + column_type_names=["UInt64", "Array(Float64)"], + column_oriented=True, + ) + # print(query_summary) + # return query_summary @classmethod def post_upload(cls, distance): @@ -48,12 +50,11 @@ def post_upload(cls, distance): except KeyError: raise IncompatibilityError(f"Unsupported distance metric: {distance}") - #cls.conn.execute( + # cls.conn.execute( # f"CREATE INDEX ON items USING hnsw (embedding {hnsw_distance_type}) WITH (m = {cls.upload_params['hnsw_config']['m']}, ef_construction = {cls.upload_params['hnsw_config']['ef_construct']})" - #) + # ) return {} @classmethod def delete_client(cls): cls.client.close() - diff --git a/engine/clients/client_factory.py b/engine/clients/client_factory.py index e135af16..d98958cd 100644 --- a/engine/clients/client_factory.py +++ b/engine/clients/client_factory.py @@ -7,19 +7,16 @@ BaseSearcher, BaseUploader, ) - -from engine.clients.elasticsearch import ( - ElasticConfigurator, - ElasticSearcher, - ElasticUploader, -) - from engine.clients.clickhouse import ( CHVectorConfigurator, CHVectorSearcher, CHVectorUploader, ) - +from engine.clients.elasticsearch import ( + ElasticConfigurator, + ElasticSearcher, + ElasticUploader, +) from engine.clients.milvus import MilvusConfigurator, MilvusSearcher, MilvusUploader from engine.clients.opensearch import ( OpenSearchConfigurator, @@ -47,7 +44,7 @@ "opensearch": OpenSearchConfigurator, "redis": RedisConfigurator, "pgvector": PgVectorConfigurator, - "clickhouse": CHVectorConfigurator + "clickhouse": CHVectorConfigurator, } ENGINE_UPLOADERS = { @@ -58,7 +55,7 @@ "opensearch": OpenSearchUploader, "redis": RedisUploader, "pgvector": PgVectorUploader, - "clickhouse": CHVectorUploader + "clickhouse": CHVectorUploader, } ENGINE_SEARCHERS = { @@ -69,7 +66,7 @@ "opensearch": OpenSearchSearcher, "redis": RedisSearcher, "pgvector": PgVectorSearcher, - "clickhouse": CHVectorSearcher + "clickhouse": CHVectorSearcher, }