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slight split loci/debug fix

psathyrellapushed 1 commit to dev • dc4067f…27cdb32 • 
11 days ago

better replay plots

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psathyrellaforce pushed to dev • 05f0486…dc4067f • 
16 days ago

better replay plots

psathyrellapushed 1 commit to dev • 692a22a…05f0486 • 
16 days ago

add iqtree dir arg + mamba cmd fix

psathyrellapushed 1 commit to main • bde8a56…692a22a • 
17 days ago

add iqtree dir arg + mamba cmd fix

psathyrellapushed 1 commit to dev • bde8a56…692a22a • 
17 days ago

tweaks for gcdyn-dl instructions

psathyrellapushed 61 commits to main • 6d391f7…bde8a56 • 
18 days ago

tweaks for gcdyn-dl instructions

psathyrellapushed 1 commit to dev • 0824d2c…bde8a56 • 
18 days ago

plotting/cf-gcdyn tweaks

psathyrellapushed 1 commit to dev • 2c16fe4…0824d2c • 
18 days ago

update cf-gcdyn.py

psathyrellapushed 1 commit to dev • eb8b691…2c16fe4 • 
27 days ago

add new hutils fcn to make many hists with same bins/bounds

psathyrellapushed 1 commit to dev • 6497f67…eb8b691 • 
on Feb 27

various cf-gcydn updates + fixes

psathyrellapushed 1 commit to dev • 84263c5…6497f67 • 
on Feb 24

variety of (mostly) plotting fixes + improvements

psathyrellapushed 1 commit to dev • ef074e4…84263c5 • 
on Feb 17

fix several things with scan args (for non-sigmoid input params),

psathyrellapushed 1 commit to dev • 13d94fb…ef074e4 • 
on Feb 5

update cf-gcdyn stuff

psathyrellapushed 1 commit to dev • 86b6d32…13d94fb • 
on Jan 30

fix a bunch of weird random rare bugs

psathyrellapushed 1 commit to dev • f8f577d…86b6d32 • 
on Jan 25

add model type to cf-gcdyn

psathyrellapushed 1 commit to dev • df2909c…f8f577d • 
on Jan 25

update for new gcreplay data

psathyrellapushed 1 commit to dev • 8f4f878…df2909c • 
on Jan 10

shuffle in utils.subset_paired_queries()

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psathyrellaforce pushed to dev • bafe435…8f4f878 • 
on Jan 8

shuffle in utils.subset_paired_queries()

psathyrellapushed 1 commit to dev • 2a45ad3…bafe435 • 
on Jan 8

add n_stops plot + update data label

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psathyrellaforce pushed to dev • d8837fe…2a45ad3 • 
on Jan 7

add n_stops plot + update data label

psathyrellapushed 1 commit to dev • 5144e2c…d8837fe • 
on Jan 7

add 'no-slug' to partition plot cfg

psathyrellapushed 1 commit to dev • f4f6d81…5144e2c • 
on Jan 5

add --dont-label-queries-to-include

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psathyrellaforce pushed to dev • bd4c944…f4f6d81 • 
on Jan 5

add --dont-label-queries-to-include

psathyrellapushed 1 commit to dev • 4462f1b…bd4c944 • 
on Jan 5

add weight_by_n_seqs, plus fix

psathyrellapushed 1 commit to dev • 319bd4d…4462f1b • 
on Dec 24, 2024

fix deep copy issue

psathyrellapushed 1 commit to dev • 6cdc723…319bd4d • 
on Dec 19, 2024

handle Non-seq queries to include

psathyrellapushed 1 commit to dev • 21db976…6cdc723 • 
on Dec 17, 2024

specifically keep --queries-to-include when removing smaller clusters

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psathyrellaforce pushed to dev • d7259f5…21db976 • 
on Dec 16, 2024

specifically keep --queries-to-include when removing smaller clusters

psathyrellapushed 1 commit to dev • bbb05f2…d7259f5 • 
on Dec 16, 2024

fix repadding issue

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psathyrellaforce pushed to dev • 23cca79…bbb05f2 • 
on Dec 15, 2024