diff --git a/revdep/README.md b/revdep/README.md index bc30082..b316d08 100644 --- a/revdep/README.md +++ b/revdep/README.md @@ -1,24 +1,32 @@ # Platform -|field |value | -|:--------|:-----------------------------------------------------------------------------------| -|version |R version 4.2.2 (2022-10-31) | -|os |macOS Ventura 13.0.1 | -|system |aarch64, darwin20 | -|ui |RStudio | -|language |(EN) | -|collate |en_CA.UTF-8 | -|ctype |en_CA.UTF-8 | -|tz |America/Vancouver | -|date |2022-12-16 | -|rstudio |2022.07.2+576 Spotted Wakerobin (desktop) | -|pandoc |2.19.2 @ /Applications/RStudio.app/Contents/MacOS/quarto/bin/tools/ (via rmarkdown) | +|field |value | +|:--------|:-------------------------------------| +|version |R version 4.4.2 (2024-10-31) | +|os |macOS Sequoia 15.1.1 | +|system |aarch64, darwin20 | +|ui |RStudio | +|language |(EN) | +|collate |en_US.UTF-8 | +|ctype |en_US.UTF-8 | +|tz |America/Vancouver | +|date |2025-01-21 | +|rstudio |2024.12.0+467 Kousa Dogwood (desktop) | +|pandoc |NA | # Dependencies -|package |old |new |Δ | -|:--------|:-----|:-----|:--| -|tidyplus |0.0.1 |0.0.2 |* | +|package |old |new |Δ | +|:--------|:----------|:------|:--| +|tidyplus |0.1.0.9003 |0.2.0 |* | +|chk |NA |0.10.0 |* | +|rlang |NA |1.1.4 |* | # Revdeps +## New problems (1) + +|package |version |error |warning |note | +|:---------|:----------|:-----|:-------|:-----------| +|[fwatlasbc](problems.md#fwatlasbc)|0.0.1.9018 |2 | |1 -1 __+1__ | + diff --git a/revdep/cran.md b/revdep/cran.md index 782ef68..64eb36c 100644 --- a/revdep/cran.md +++ b/revdep/cran.md @@ -1,6 +1,6 @@ ## revdepcheck results -We checked 1 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package. +We checked 2 reverse dependencies (0 from CRAN + 2 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. * We saw 0 new problems * We failed to check 0 packages diff --git a/revdep/problems.md b/revdep/problems.md index 9a20736..28214e0 100644 --- a/revdep/problems.md +++ b/revdep/problems.md @@ -1 +1,120 @@ -*Wow, no problems at all. :)* \ No newline at end of file +# fwatlasbc + +
+ +* Version: 0.0.1.9018 +* GitHub: NA +* Source code: https://github.com/cran/fwatlasbc +* Number of recursive dependencies: 131 + +Run `revdepcheck::revdep_details(, "fwatlasbc")` for more info + +
+ +## Newly broken + +* checking dependencies in R code ...sh: line 1: 35877 Segmentation fault: 11 R_DEFAULT_PACKAGES=NULL '/Library/Frameworks/R.framework/Resources/bin/R' --vanilla --no-echo 2>&1 < '/var/folders/yr/tq_q43k50m795hb4y0njhyth0000gn/T//RtmpsdZi88/file8a3169fd0cf7' + ``` + NOTE + + *** caught segfault *** + address 0x6c69662068637573, cause 'invalid permissions' + + Traceback: + 1: dyn.load(file, DLLpath = DLLpath, ...) + 2: library.dynam(lib, package, package.lib) + 3: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) + 4: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]), from = package) + ... + 6: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage")) + 7: suppressMessages(loadNamespace(p)) + 8: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning")) + 9: suppressWarnings(suppressMessages(loadNamespace(p))) + 10: doTryCatch(return(expr), name, parentenv, handler) + 11: tryCatchOne(expr, names, parentenv, handlers[[1L]]) + 12: tryCatchList(expr, classes, parentenv, handlers) + 13: tryCatch(suppressWarnings(suppressMessages(loadNamespace(p))), error = function(e) e) + 14: tools:::.check_packages_used(package = "fwatlasbc") + An irrecoverable exception occurred. R is aborting now ... + ``` + +## Newly fixed + +* checking dependencies in R code ...sh: line 1: 35876 Segmentation fault: 11 R_DEFAULT_PACKAGES=NULL '/Library/Frameworks/R.framework/Resources/bin/R' --vanilla --no-echo 2>&1 < '/var/folders/yr/tq_q43k50m795hb4y0njhyth0000gn/T//RtmpxbUN9R/file8a0e692feb49' + ``` + NOTE + + *** caught segfault *** + address 0x6c69662068637573, cause 'invalid permissions' + + Traceback: + 1: dyn.load(file, DLLpath = DLLpath, ...) + 2: library.dynam(lib, package, package.lib) + 3: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) + 4: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]), from = package) + ... + 6: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage")) + 7: suppressMessages(loadNamespace(p)) + 8: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning")) + 9: suppressWarnings(suppressMessages(loadNamespace(p))) + 10: doTryCatch(return(expr), name, parentenv, handler) + 11: tryCatchOne(expr, names, parentenv, handlers[[1L]]) + 12: tryCatchList(expr, classes, parentenv, handlers) + 13: tryCatch(suppressWarnings(suppressMessages(loadNamespace(p))), error = function(e) e) + 14: tools:::.check_packages_used(package = "fwatlasbc") + An irrecoverable exception occurred. R is aborting now ... + ``` + +## In both + +* checking examples ... ERROR + ``` + Running examples in ‘fwatlasbc-Ex.R’ failed + The error most likely occurred in: + + > ### Name: fwa_snap_rm_to_point + > ### Title: Snap River Meter to Point + > ### Aliases: fwa_snap_rm_to_point + > + > ### ** Examples + > + > rm <- fwa_add_rms_to_blk(data.frame(blk = 356308001)) + Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/Users/aylapearson/Code/poissonconsulting/tidyplus/revdep/library.noindex/fwatlasbc/sf/libs/sf.so': + dlopen(/Users/aylapearson/Code/poissonconsulting/tidyplus/revdep/library.noindex/fwatlasbc/sf/libs/sf.so, 0x0006): Library not loaded: /opt/homebrew/opt/gdal/lib/libgdal.35.dylib + Referenced from: /Users/aylapearson/Code/poissonconsulting/tidyplus/revdep/library.noindex/fwatlasbc/sf/libs/sf.so + Reason: tried: '/opt/homebrew/opt/gdal/lib/libgdal.35.dylib' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/opt/homebrew/opt/gdal/lib/libgdal.35.dylib' (no such file), '/opt/homebrew/opt/gdal/lib/libgdal.35.dylib' (no such file), '/Library/Frameworks/R.framework/Resources/lib/libgdal.35.dylib' (no such file), '/Library/Java/JavaVirtualMachines/jdk-11.0.18+10/Contents/Home/lib/server/libgdal.35.dylib' (no such file), '/opt/homebrew/Cellar/gdal/3.10.1/lib/libgdal.35.dylib' (no such file), '/System/Volumes/Preboo + Calls: fwa_add_rms_to_blk ... -> loadNamespace -> library.dynam -> dyn.load + Execution halted + ``` + +* checking tests ... + ``` + Running ‘testthat.R’/Library/Frameworks/R.framework/Resources/bin/BATCH: line 60: 36511 Segmentation fault: 11 ${R_HOME}/bin/R -f ${in} ${opts} ${R_BATCH_OPTIONS} > ${out} 2>&1 + + ERROR + Running the tests in ‘tests/testthat.R’ failed. + Last 13 lines of output: + 27: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { }) + 28: test_code(test = NULL, code = exprs, env = env, reporter = get_reporter() %||% StopReporter$new()) + 29: source_file(path, env = env(env), desc = desc, error_call = error_call) + 30: FUN(X[[i]], ...) + 31: lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call) + ... + 32: doTryCatch(return(expr), name, parentenv, handler) + 33: tryCatchOne(expr, names, parentenv, handlers[[1L]]) + 34: tryCatchList(expr, classes, parentenv, handlers) + 35: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL}) + 36: with_reporter(reporters$multi, lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call)) + 37: test_files_serial(test_dir = test_dir, test_package = test_package, test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, desc = desc, load_package = load_package, error_call = error_call) + 38: test_files(test_dir = path, test_paths = test_paths, test_package = package, reporter = reporter, load_helpers = load_helpers, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, load_package = load_package, parallel = parallel) + 39: test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed") + 40: test_check("fwatlasbc") + An irrecoverable exception occurred. R is aborting now ... + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 15 marked UTF-8 strings + ``` +