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EDPftvarcon.F90
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module EDPftvarcon
!-----------------------------------------------------------------------
! !DESCRIPTION:
! Module containing vegetation constants and method to
! read and initialize vegetation (PFT) constants.
!
! !USES:
use EDTypesMod , only : maxSWb, ivis, inir
use EDTypesMod , only : n_uptake_mode, p_uptake_mode
use FatesConstantsMod, only : r8 => fates_r8
use FatesConstantsMod, only : nearzero
use FatesConstantsMod, only : itrue, ifalse
use PRTParametersMod, only : prt_params
use FatesGlobals, only : fates_log
use FatesGlobals, only : endrun => fates_endrun
use FatesLitterMod, only : ilabile,icellulose,ilignin
use PRTGenericMod, only : leaf_organ, fnrt_organ, store_organ
use PRTGenericMod, only : sapw_organ, struct_organ, repro_organ
use PRTGenericMod, only : prt_cnp_flex_allom_hyp,prt_carbon_allom_hyp
use FatesInterfaceTypesMod, only : hlm_nitrogen_spec, hlm_phosphorus_spec
use FatesInterfaceTypesMod, only : hlm_parteh_mode
use FatesInterfaceTypesMod, only : hlm_nu_com
use FatesConstantsMod , only : prescribed_p_uptake
use FatesConstantsMod , only : prescribed_n_uptake
use FatesConstantsMod , only : coupled_p_uptake
use FatesConstantsMod , only : coupled_n_uptake
! CIME Globals
use shr_log_mod , only : errMsg => shr_log_errMsg
!
! !PUBLIC TYPES:
implicit none
save
private
integer, parameter, public :: lower_bound_pft = 1
integer, parameter, public :: lower_bound_general = 1
!ED specific variables.
type, public :: EDPftvarcon_type
real(r8), allocatable :: freezetol(:) ! minimum temperature tolerance
real(r8), allocatable :: hgt_min(:) ! sapling height m
real(r8), allocatable :: dleaf(:) ! leaf characteristic dimension length (m)
real(r8), allocatable :: z0mr(:) ! ratio of roughness length of vegetation to height (-)
real(r8), allocatable :: displar(:) ! ratio of displacement height to canopy top height
real(r8), allocatable :: bark_scaler(:) ! scaler from dbh to bark thickness. For fire model.
real(r8), allocatable :: crown_kill(:) ! scaler on fire death. For fire model.
real(r8), allocatable :: initd(:) ! initial seedling density
real(r8), allocatable :: seed_suppl(:) ! seeds that come from outside the gridbox.
real(r8), allocatable :: bb_slope(:) ! ball berry slope parameter
real(r8), allocatable :: medlyn_slope(:) ! Medlyn slope parameter KPa^0.5
real(r8), allocatable :: stomatal_intercept(:) ! intercept of stomatal conductance model
real(r8), allocatable :: lf_flab(:) ! Leaf litter labile fraction [-]
real(r8), allocatable :: lf_fcel(:) ! Leaf litter cellulose fraction [-]
real(r8), allocatable :: lf_flig(:) ! Leaf litter lignan fraction [-]
real(r8), allocatable :: fr_flab(:) ! Fine-root litter labile fraction [-]
real(r8), allocatable :: fr_fcel(:) ! Fine-root litter cellulose fraction [-]
real(r8), allocatable :: fr_flig(:) ! Fine-root litter lignatn fraction [-]
real(r8), allocatable :: xl(:) ! Leaf-stem orientation index
real(r8), allocatable :: clumping_index(:) ! factor describing how much self-occlusion
! of leaf scattering elements
! decreases light interception
real(r8), allocatable :: c3psn(:) ! index defining the photosynthetic
! pathway C4 = 0, C3 = 1
real(r8), allocatable :: smpso(:) ! Soil water potential at full stomatal opening
! (non-HYDRO mode only) [mm]
real(r8), allocatable :: smpsc(:) ! Soil water potential at full stomatal closure
! (non-HYDRO mode only) [mm]
real(r8), allocatable :: maintresp_reduction_curvature(:) ! curvature of MR reduction as f(carbon storage),
! 1=linear, 0=very curved
real(r8), allocatable :: maintresp_reduction_intercept(:) ! intercept of MR reduction as f(carbon storage),
! 0=no throttling, 1=max throttling
real(r8), allocatable :: bmort(:)
real(r8), allocatable :: mort_ip_size_senescence(:) ! inflection point of dbh dependent senescence
real(r8), allocatable :: mort_r_size_senescence(:) ! rate of change in mortality with dbh
real(r8), allocatable :: mort_ip_age_senescence(:) ! inflection point of age dependent senescence
real(r8), allocatable :: mort_r_age_senescence(:) ! rate of change in mortality with age
real(r8), allocatable :: mort_scalar_coldstress(:)
real(r8), allocatable :: mort_scalar_cstarvation(:)
real(r8), allocatable :: mort_scalar_hydrfailure(:)
real(r8), allocatable :: hf_sm_threshold(:)
real(r8), allocatable :: hf_flc_threshold(:)
real(r8), allocatable :: vcmaxha(:)
real(r8), allocatable :: jmaxha(:)
real(r8), allocatable :: vcmaxhd(:)
real(r8), allocatable :: jmaxhd(:)
real(r8), allocatable :: vcmaxse(:)
real(r8), allocatable :: jmaxse(:)
real(r8), allocatable :: germination_rate(:) ! Fraction of seed mass germinating per year (yr-1)
real(r8), allocatable :: seed_decay_rate(:) ! Fraction of seed mass (both germinated and
! ungerminated), decaying per year (yr-1)
real(r8), allocatable :: trim_limit(:) ! Limit to reductions in leaf area w stress (m2/m2)
real(r8), allocatable :: trim_inc(:) ! Incremental change in trimming function (m2/m2)
real(r8), allocatable :: rhol(:, :)
real(r8), allocatable :: rhos(:, :)
real(r8), allocatable :: taul(:, :)
real(r8), allocatable :: taus(:, :)
! Fire Parameters (No PFT vector capabilities in their own routines)
! See fire/SFParamsMod.F90 for bulk of fire parameters
! -------------------------------------------------------------------------------------------
real(r8), allocatable :: fire_alpha_SH(:) ! spitfire parameter, alpha scorch height
! Equation 16 Thonicke et al 2010
! Non-PARTEH Allometry Parameters
! --------------------------------------------------------------------------------------------
real(r8), allocatable :: allom_frbstor_repro(:) ! fraction of bstrore for reproduction after mortality
! Prescribed Physiology Mode Parameters
real(r8), allocatable :: prescribed_npp_canopy(:) ! this is only for the
! prescribed_physiology_mode
real(r8), allocatable :: prescribed_npp_understory(:) ! this is only for the
! prescribed physiology mode
real(r8), allocatable :: prescribed_mortality_canopy(:) ! this is only for the
! prescribed_physiology_mode
real(r8), allocatable :: prescribed_mortality_understory(:) ! this is only for the
! prescribed_physiology_mode
real(r8), allocatable :: prescribed_recruitment(:) ! this is only for the
! prescribed_physiology_mode
! Nutrient Aquisition (ECA & RD)
real(r8), allocatable :: decompmicc(:) ! microbial decomposer biomass gC/m3
! on root surface
! ECA Parameters: See Zhu et al. Multiple soil nutrient competition between plants,
! microbes, and mineral surfaces: model development, parameterization,
! and example applications in several tropical forests. Biogeosciences,
! 13, pp.341-363, 2016.
! KM: Michaeles-Menten half-saturation constants for ECA (plant–enzyme affinity)
! VMAX: Product of the reaction-rate and enzyme abundance for each PFT in ECA
! Note*: units of [gC] is grams carbon of fine-root
real(r8), allocatable :: eca_km_nh4(:) ! half-saturation constant for plant nh4 uptake [gN/m3]
real(r8), allocatable :: eca_vmax_nh4(:) ! maximum production rate for plant nh4 uptake [gN/gC/s]
real(r8), allocatable :: eca_km_no3(:) ! half-saturation constant for plant no3 uptake [gN/m3]
real(r8), allocatable :: eca_vmax_no3(:) ! maximum production rate for plant no3 uptake [gN/gC/s]
real(r8), allocatable :: eca_km_p(:) ! half-saturation constant for plant p uptake [gP/m3]
real(r8), allocatable :: eca_vmax_p(:) ! maximum production rate for plant p uptake [gP/gC/s]
real(r8), allocatable :: eca_km_ptase(:) ! half-saturation constant for biochemical P production [gP/m3]
real(r8), allocatable :: eca_vmax_ptase(:) ! maximum production rate for biochemical P prod [gP/gC/s]
real(r8), allocatable :: eca_alpha_ptase(:) ! Fraction of min P generated from ptase activity
! that is immediately sent to the plant [/]
real(r8), allocatable :: eca_lambda_ptase(:) ! critical value for Ptase that incurs
! biochemical production, fraction based how much
! more in need a plant is for P versus N [/]
!real(r8), allocatable :: nfix1(:) ! nitrogen fixation parameter 1
!real(r8), allocatable :: nfix2(:) ! nitrogen fixation parameter 2
! Turnover related things
real(r8), allocatable :: phenflush_fraction(:) ! Maximum fraction of storage carbon used to flush leaves
! on bud-burst [kgC/kgC]
real(r8), allocatable :: phen_cold_size_threshold(:) ! stem/leaf drop occurs on DBH size of decidious non-woody
! (coastal grass) plants larger than the threshold value
real(r8), allocatable :: phen_stem_drop_fraction(:) ! Fraction of stem dropped/senescened for decidious
! non-woody (grass) plants
! Nutrient Aquisition parameters
real(r8), allocatable :: prescribed_nuptake(:) ! If there is no soil BGC model active,
! prescribe an uptake rate for nitrogen, this is the fraction of plant demand
real(r8), allocatable :: prescribed_puptake(:) ! If there is no soil BGC model active,
! prescribe an uptake rate for phosphorus
! This is the fraction of plant demand
! Unassociated pft dimensioned free parameter that
! developers can use for testing arbitrary new hypothese
real(r8), allocatable :: dev_arbitrary_pft(:)
! Parameters dimensioned by PFT and leaf age
real(r8), allocatable :: vcmax25top(:,:) ! maximum carboxylation rate of Rub. at 25C,
! canopy top [umol CO2/m^2/s]. Dimensioned by
! leaf age-class
! Plant Hydraulic Parameters
! ---------------------------------------------------------------------------------------------
! PFT Dimension
real(r8), allocatable :: hydr_p_taper(:) ! xylem taper exponent
real(r8), allocatable :: hydr_rs2(:) ! absorbing root radius (m)
real(r8), allocatable :: hydr_srl(:) ! specific root length (m g-1)
real(r8), allocatable :: hydr_rfrac_stem(:) ! fraction of total tree resistance from troot to canopy
real(r8), allocatable :: hydr_avuln_gs(:) ! shape parameter for stomatal control of water vapor exiting leaf
real(r8), allocatable :: hydr_p50_gs(:) ! water potential at 50% loss of stomatal conductance
real(r8), allocatable :: hydr_k_lwp(:) ! inner leaf humidity scaling coefficient
! PFT x Organ Dimension (organs are: 1=leaf, 2=stem, 3=transporting root, 4=absorbing root)
! ----------------------------------------------------------------------------------
! Van Genuchten PV PK curves
real(r8), allocatable :: hydr_vg_alpha_node(:,:) ! capilary length parameter in van Genuchten model
real(r8), allocatable :: hydr_vg_m_node(:,:) ! pore size distribution, m in van Genuchten 1980 model, range (0,1)
real(r8), allocatable :: hydr_vg_n_node(:,:) ! pore size distribution, n in van Genuchten 1980 model, range >2
! TFS PV-PK curves
real(r8), allocatable :: hydr_avuln_node(:,:) ! xylem vulernability curve shape parameter
real(r8), allocatable :: hydr_p50_node(:,:) ! xylem water potential at 50% conductivity loss (MPa)
real(r8), allocatable :: hydr_epsil_node(:,:) ! bulk elastic modulus (MPa)
real(r8), allocatable :: hydr_pitlp_node(:,:) ! turgor loss point (MPa)
real(r8), allocatable :: hydr_fcap_node(:,:) ! fraction of (1-resid_node) that is capillary in source
real(r8), allocatable :: hydr_pinot_node(:,:) ! osmotic potential at full turgor
real(r8), allocatable :: hydr_kmax_node(:,:) ! maximum xylem conductivity per unit conducting xylem area
! Parameters for both VG and TFS PV-PK curves
real(r8), allocatable :: hydr_resid_node(:,:) ! residual fraction (fraction)
real(r8), allocatable :: hydr_thetas_node(:,:) ! saturated water content (cm3/cm3)
! Table that maps HLM pfts to FATES pfts for fixed biogeography mode
! The values are area fractions (NOT IMPLEMENTED)
real(r8), allocatable :: hlm_pft_map(:,:)
contains
procedure, public :: Init => EDpftconInit
procedure, public :: Register
procedure, public :: Receive
procedure, private :: Register_PFT
procedure, private :: Receive_PFT
procedure, private :: Register_PFT_hydr_organs
procedure, private :: Receive_PFT_hydr_organs
procedure, private :: Register_PFT_leafage
procedure, private :: Receive_PFT_leafage
procedure, private :: Register_PFT_numrad
procedure, private :: Receive_PFT_numrad
end type EDPftvarcon_type
type(EDPftvarcon_type), public :: EDPftvarcon_inst
character(len=*), parameter, private :: sourcefile = &
__FILE__
!
! !PUBLIC MEMBER FUNCTIONS:
public :: FatesReportPFTParams
public :: FatesCheckParams
public :: GetDecompyFrac
!-----------------------------------------------------------------------
contains
!-----------------------------------------------------------------------
subroutine EDpftconInit(this)
use shr_infnan_mod , only : nan => shr_infnan_nan, assignment(=)
implicit none
class(EDPftvarcon_type), intent(inout) :: this
end subroutine EDpftconInit
!-----------------------------------------------------------------------
subroutine Register(this, fates_params)
use FatesParametersInterface, only : fates_parameters_type
implicit none
class(EDPftvarcon_type), intent(inout) :: this
class(fates_parameters_type), intent(inout) :: fates_params
call this%Register_PFT(fates_params)
call this%Register_PFT_numrad(fates_params)
call this%Register_PFT_hydr_organs(fates_params)
call this%Register_PFT_leafage(fates_params)
end subroutine Register
!-----------------------------------------------------------------------
subroutine Receive(this, fates_params)
use FatesParametersInterface, only : fates_parameters_type
implicit none
class(EDPftvarcon_type), intent(inout) :: this
class(fates_parameters_type), intent(inout) :: fates_params
call this%Receive_PFT(fates_params)
call this%Receive_PFT_numrad(fates_params)
call this%Receive_PFT_hydr_organs(fates_params)
call this%Receive_PFT_leafage(fates_params)
end subroutine Receive
!-----------------------------------------------------------------------
subroutine Register_PFT(this, fates_params)
use FatesParametersInterface, only : fates_parameters_type, param_string_length
use FatesParametersInterface, only : dimension_name_pft, dimension_shape_1d
use FatesParametersInterface, only : dimension_name_hlm_pftno, dimension_shape_2d
implicit none
class(EDPftvarcon_type), intent(inout) :: this
class(fates_parameters_type), intent(inout) :: fates_params
character(len=param_string_length), parameter :: dim_names(1) = (/dimension_name_pft/)
character(len=param_string_length) :: pftmap_dim_names(2)
integer, parameter :: dim_lower_bound(1) = (/ lower_bound_pft /)
character(len=param_string_length) :: name
!X! name = ''
!X! call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
!X! dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_mort_freezetol'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_recruit_hgt_min'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_fire_bark_scaler'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_fire_crown_kill'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_recruit_initd'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_seed_suppl'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_leaf_stomatal_slope_ballberry'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_leaf_stomatal_slope_medlyn'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_leaf_stomatal_intercept'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_lf_flab'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_lf_fcel'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_lf_flig'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_fr_flab'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_fr_fcel'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_fr_flig'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_leaf_xl'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_leaf_clumping_index'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_leaf_c3psn'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_smpso'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_smpsc'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_maintresp_reduction_curvature'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_maintresp_reduction_intercept'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_prescribed_npp_canopy'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_prescribed_npp_understory'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_prescribed_mortality_canopy'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_prescribed_mortality_understory'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_prescribed_recruitment'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_fire_alpha_SH'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_allom_frbstor_repro'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_hydr_p_taper'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_hydr_rs2'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_hydr_srl'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_hydr_rfrac_stem'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_hydr_avuln_gs'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_hydr_p50_gs'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_hydr_k_lwp'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_mort_bmort'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_mort_r_size_senescence'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_mort_ip_size_senescence'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_mort_r_age_senescence'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_mort_ip_age_senescence'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_mort_scalar_coldstress'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_mort_scalar_cstarvation'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_mort_scalar_hydrfailure'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_mort_hf_sm_threshold'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_mort_hf_flc_threshold'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_leaf_vcmaxha'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_leaf_jmaxha'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_leaf_vcmaxhd'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_leaf_jmaxhd'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_leaf_vcmaxse'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_leaf_jmaxse'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_seed_germination_rate'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_seed_decay_rate'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_trim_limit'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_trim_inc'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_leaf_diameter'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_z0mr'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_displar'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_phenflush_fraction'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_phen_cold_size_threshold'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_phen_stem_drop_fraction'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
! Nutrient competition parameters
name = 'fates_eca_decompmicc'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_eca_km_nh4'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_eca_vmax_nh4'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_eca_km_no3'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_eca_vmax_no3'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_eca_km_p'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_eca_vmax_p'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_eca_km_ptase'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_eca_vmax_ptase'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_eca_alpha_ptase'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_eca_lambda_ptase'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_prescribed_nuptake'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_prescribed_puptake'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
name = 'fates_dev_arbitrary_pft'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_1d, &
dimension_names=dim_names, lower_bounds=dim_lower_bound)
! adding the hlm_pft_map variable with two dimensions - FATES PFTno and HLM PFTno
pftmap_dim_names(1) = dimension_name_pft
pftmap_dim_names(2) = dimension_name_hlm_pftno
name = 'fates_hlm_pft_map'
call fates_params%RegisterParameter(name=name, dimension_shape=dimension_shape_2d, &
dimension_names=pftmap_dim_names, lower_bounds=dim_lower_bound)
end subroutine Register_PFT
!-----------------------------------------------------------------------
subroutine Receive_PFT(this, fates_params)
use FatesParametersInterface, only : fates_parameters_type, param_string_length
implicit none
class(EDPftvarcon_type), intent(inout) :: this
class(fates_parameters_type), intent(inout) :: fates_params
character(len=param_string_length) :: name
!X! name = ''
!X! call fates_params%RetreiveParameter(name=name, &
!X! data=this%)
name = 'fates_mort_freezetol'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%freezetol)
name = 'fates_recruit_hgt_min'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%hgt_min)
name = 'fates_fire_bark_scaler'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%bark_scaler)
name = 'fates_fire_crown_kill'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%crown_kill)
name = 'fates_recruit_initd'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%initd)
name = 'fates_seed_suppl'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%seed_suppl)
name = 'fates_leaf_stomatal_slope_ballberry'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%bb_slope)
name = 'fates_leaf_stomatal_slope_medlyn'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%medlyn_slope)
name = 'fates_leaf_stomatal_intercept'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%stomatal_intercept)
name = 'fates_lf_flab'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%lf_flab)
name = 'fates_lf_fcel'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%lf_fcel)
name = 'fates_lf_flig'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%lf_flig)
name = 'fates_fr_flab'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%fr_flab)
name = 'fates_fr_fcel'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%fr_fcel)
name = 'fates_fr_flig'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%fr_flig)
name = 'fates_leaf_xl'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%xl)
name = 'fates_leaf_clumping_index'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%clumping_index)
name = 'fates_leaf_c3psn'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%c3psn)
name = 'fates_smpso'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%smpso)
name = 'fates_smpsc'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%smpsc)
name = 'fates_maintresp_reduction_curvature'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%maintresp_reduction_curvature)
name = 'fates_maintresp_reduction_intercept'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%maintresp_reduction_intercept)
name = 'fates_prescribed_npp_canopy'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%prescribed_npp_canopy)
name = 'fates_prescribed_npp_understory'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%prescribed_npp_understory)
name = 'fates_prescribed_mortality_canopy'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%prescribed_mortality_canopy)
name = 'fates_prescribed_mortality_understory'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%prescribed_mortality_understory)
name = 'fates_prescribed_recruitment'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%prescribed_recruitment)
name = 'fates_fire_alpha_SH'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%fire_alpha_SH)
name = 'fates_allom_frbstor_repro'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%allom_frbstor_repro)
name = 'fates_hydr_p_taper'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%hydr_p_taper)
name = 'fates_hydr_rs2'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%hydr_rs2)
name = 'fates_hydr_srl'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%hydr_srl)
name = 'fates_hydr_rfrac_stem'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%hydr_rfrac_stem)
name = 'fates_hydr_k_lwp'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%hydr_k_lwp)
name = 'fates_hydr_avuln_gs'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%hydr_avuln_gs)
name = 'fates_hydr_p50_gs'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%hydr_p50_gs)
name = 'fates_hydr_k_lwp'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%hydr_k_lwp)
name = 'fates_mort_bmort'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%bmort)
name = 'fates_mort_scalar_coldstress'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%mort_scalar_coldstress)
name = 'fates_mort_scalar_cstarvation'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%mort_scalar_cstarvation)
name = 'fates_mort_scalar_hydrfailure'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%mort_scalar_hydrfailure)
name = 'fates_mort_ip_size_senescence'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%mort_ip_size_senescence)
name = 'fates_mort_r_size_senescence'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%mort_r_size_senescence)
name = 'fates_mort_ip_age_senescence'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%mort_ip_age_senescence)
name = 'fates_mort_r_age_senescence'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%mort_r_age_senescence)
name = 'fates_mort_scalar_coldstress'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%mort_scalar_coldstress)
name = 'fates_mort_scalar_cstarvation'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%mort_scalar_cstarvation)
name = 'fates_mort_hf_sm_threshold'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%hf_sm_threshold)
name = 'fates_mort_hf_flc_threshold'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%hf_flc_threshold)
name = 'fates_leaf_vcmaxha'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%vcmaxha)
name = 'fates_leaf_jmaxha'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%jmaxha)
name = 'fates_leaf_vcmaxhd'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%vcmaxhd)
name = 'fates_leaf_jmaxhd'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%jmaxhd)
name = 'fates_leaf_vcmaxse'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%vcmaxse)
name = 'fates_leaf_jmaxse'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%jmaxse)
name = 'fates_seed_germination_rate'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%germination_rate)
name = 'fates_seed_decay_rate'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%seed_decay_rate)
name = 'fates_trim_limit'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%trim_limit)
name = 'fates_trim_inc'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%trim_inc)
name = 'fates_leaf_diameter'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%dleaf)
name = 'fates_z0mr'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%z0mr)
name = 'fates_displar'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%displar)
name = 'fates_phenflush_fraction'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%phenflush_fraction)
name = 'fates_phen_cold_size_threshold'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%phen_cold_size_threshold)
name = 'fates_phen_stem_drop_fraction'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%phen_stem_drop_fraction)
name = 'fates_prescribed_nuptake'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%prescribed_nuptake)
name = 'fates_prescribed_puptake'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%prescribed_puptake)
name = 'fates_dev_arbitrary_pft'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%dev_arbitrary_pft)
name = 'fates_eca_decompmicc'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%decompmicc)
name = 'fates_eca_km_nh4'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%eca_km_nh4)
name = 'fates_eca_vmax_nh4'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%eca_vmax_nh4)
name = 'fates_eca_km_no3'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%eca_km_no3)
name = 'fates_eca_vmax_no3'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%eca_vmax_no3)
name = 'fates_eca_km_p'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%eca_km_p)
name = 'fates_eca_vmax_p'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%eca_vmax_p)
name = 'fates_eca_km_ptase'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%eca_km_ptase)
name = 'fates_eca_vmax_ptase'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%eca_vmax_ptase)
name = 'fates_eca_alpha_ptase'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%eca_alpha_ptase)
name = 'fates_eca_lambda_ptase'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%eca_lambda_ptase)
name = 'fates_hlm_pft_map'
call fates_params%RetreiveParameterAllocate(name=name, &
data=this%hlm_pft_map)
end subroutine Receive_PFT
!-----------------------------------------------------------------------
subroutine Register_PFT_numrad(this, fates_params)
! NOTE(bja, 2017-02) these are 2-d parameters, but they are
! currently stored in the parameter file as separate 1-d
! arrays. We have to register the parameters as 1-d arrays as they
! are on the parameter file. We store them as 2-d in the receive step.
use FatesParametersInterface, only : fates_parameters_type, param_string_length
use FatesParametersInterface, only : dimension_name_pft, dimension_shape_1d
implicit none
class(EDPftvarcon_type), intent(inout) :: this
class(fates_parameters_type), intent(inout) :: fates_params
character(len=param_string_length), parameter :: dim_names(1) = (/dimension_name_pft/)
integer, parameter :: dim_lower_bound(1) = (/ lower_bound_pft /)
character(len=param_string_length) :: name
!X! name = ''