From 076a184fd809d62f5ffb8e929587f173f2ce472f Mon Sep 17 00:00:00 2001 From: Pablo Cingolani Date: Fri, 25 Oct 2024 08:52:58 -0400 Subject: [PATCH] Move old scripts --- scripts/{ => _OLD}/1kg.sh | 0 scripts/{ => _OLD}/annotate_demo.sh | 0 scripts/{ => _OLD}/annotate_demo_GATK.sh | 0 scripts/{ => _OLD}/bedEffOnePerLine.pl | 0 scripts/{ => _OLD}/cgShore.pl | 0 scripts/{ => _OLD}/cgShore.sh | 0 scripts/{ => _OLD}/countColumns.py | 0 scripts/{ => _OLD}/db.pl | 0 scripts/{ => _OLD}/extractSequences.pl | 0 scripts/{ => _OLD}/fasta2tab.pl | 0 scripts/{ => _OLD}/fastaSample.pl | 0 scripts/{ => _OLD}/fastaSplit.pl | 0 scripts/{ => _OLD}/fastqSplit.pl | 0 scripts/{ => _OLD}/filterBy.py | 0 scripts/{ => _OLD}/gffRemovePhase.pl | 0 scripts/{ => _OLD}/isutf8.py | 0 scripts/{ => _OLD}/join.pl | 0 scripts/{ => _OLD}/joinSnpEff.pl | 0 scripts/{ => _OLD}/make_and_commit_docs.sh | 0 scripts/{ => _OLD}/nextProt_filter.pl | 0 scripts/{ => _OLD}/ped2vcf.py | 0 scripts/{ => _OLD}/plot.pl | 0 scripts/{ => _OLD}/plotHistogram.pl | 0 scripts/{ => _OLD}/plotLabel.pl | 0 scripts/{ => _OLD}/plotMA.pl | 0 scripts/{ => _OLD}/plotQQ.pl | 0 scripts/{ => _OLD}/plotQQsubsample.pl | 0 scripts/{ => _OLD}/plotSmoothScatter.pl | 0 scripts/{ => _OLD}/plotXY.pl | 0 scripts/{ => _OLD}/queue.pl | 0 scripts/{ => _OLD}/sam2fastq.pl | 0 scripts/{ => _OLD}/sample.pl | 0 .../snpSift_filter_sample_to_number.pl | 0 scripts/{ => _OLD}/sortLine.py | 0 scripts/{ => _OLD}/splitChr.pl | 0 scripts/{ => _OLD}/statsNum.pl | 0 scripts/{ => _OLD}/swapCols.pl | 0 scripts/{ => _OLD}/transpose.pl | 0 scripts/{ => _OLD}/txt2fa.pl | 0 scripts/{ => _OLD}/txt2vcf.py | 0 scripts/{ => _OLD}/uniqCount.pl | 0 scripts/{ => _OLD}/uniqCut.pl | 0 scripts/{ => _OLD}/vcfAnnFirst.py | 0 scripts/{ => _OLD}/vcfBareBones.pl | 0 scripts/{ => _OLD}/vcfEffHighest.ORI.py | 0 scripts/{ => _OLD}/vcfEffOnePerLine.pl | 0 scripts/{ => _OLD}/vcfFilterSamples.pl | 0 scripts/{ => _OLD}/vcfInfoOnePerLine.pl | 0 scripts/{ => _OLD}/vcfOnlyAlts.pl | 0 scripts/{ => _OLD}/vcfReduceGenotypes.pl | 0 scripts/{ => _OLD}/vcfRefCorrect.py | 0 scripts/{ => _OLD}/wigSplit.pl | 0 scripts_build/{ => _OLD}/createBundles.pl | 0 .../{ => _OLD}/dbNSFP_analise_filed_counts.pl | 0 scripts_build/{ => _OLD}/ensemblVCF2hgvs.pl | 0 .../{ => _OLD}/ensembl_gtf_versions.py | 0 .../ensembl_protein_transcriptId.sh | 0 scripts_build/{ => _OLD}/file2GenomeName.pl | 0 .../{ => _OLD}/genesTxtColumnNames.sh | 0 scripts_build/{ => _OLD}/gwascatalog2vcf.pl | 0 .../{ => _OLD}/hg19_proteinFasta2NM.pl | 0 .../hg19_proteinFastaReplaceName.pl | 0 scripts_build/{ => _OLD}/make_check.pl | 0 scripts_build/{ => _OLD}/mirna2bed.pl | 0 scripts_build/{ => _OLD}/mirna2bed.sh | 0 scripts_build/{ => _OLD}/promoterSequences.sh | 0 scripts_build/{ => _OLD}/proteinFasta2NM.pl | 0 scripts_build/{ => _OLD}/randBedIntervals.pl | 0 .../{ => _OLD}/run_epigenome_analysis.sh | 0 scripts_build/{ => _OLD}/sam2fastq.pl | 0 scripts_build/{ => _OLD}/sift2vcf.pl | 0 scripts_build/{ => _OLD}/sift2vcf.sh | 0 .../{ => _OLD}/stats_monthly_usage.pl | 0 scripts_build/{ => _OLD}/test.Broad_NS_SYN.sh | 0 scripts_build/{ => dbNSFP}/dbNSFP_sort.pl | 0 .../{ => dbNSFP}/dbNSFP_split_by_chr.pl | 0 ...00001405.40_GRCh38.p14_assembly_report.txt | 773 ++++++++++++++++++ scripts_build/dbSnp/chr2id.txt | 709 ++++++++++++++++ scripts_build/dbSnp/convert_to_chr.py | 33 + scripts_build/{ => pdb}/pdbCompoundLines.py | 0 scripts_build/{ => pdb}/pdbCompoundLines.sh | 0 spliceSites/u12_branch.pwm | 14 - 82 files changed, 1515 insertions(+), 14 deletions(-) rename scripts/{ => _OLD}/1kg.sh (100%) rename scripts/{ => _OLD}/annotate_demo.sh (100%) rename scripts/{ => _OLD}/annotate_demo_GATK.sh (100%) rename scripts/{ => _OLD}/bedEffOnePerLine.pl (100%) rename scripts/{ => _OLD}/cgShore.pl (100%) rename scripts/{ => _OLD}/cgShore.sh (100%) rename scripts/{ => _OLD}/countColumns.py (100%) rename scripts/{ => _OLD}/db.pl (100%) rename scripts/{ => _OLD}/extractSequences.pl (100%) rename scripts/{ => _OLD}/fasta2tab.pl (100%) rename scripts/{ => _OLD}/fastaSample.pl (100%) rename scripts/{ => _OLD}/fastaSplit.pl (100%) rename scripts/{ => _OLD}/fastqSplit.pl (100%) rename scripts/{ => _OLD}/filterBy.py (100%) rename scripts/{ => _OLD}/gffRemovePhase.pl (100%) rename scripts/{ => _OLD}/isutf8.py (100%) rename scripts/{ => _OLD}/join.pl (100%) rename scripts/{ => _OLD}/joinSnpEff.pl (100%) rename scripts/{ => _OLD}/make_and_commit_docs.sh (100%) rename scripts/{ => _OLD}/nextProt_filter.pl (100%) rename scripts/{ => _OLD}/ped2vcf.py (100%) rename scripts/{ => _OLD}/plot.pl (100%) rename scripts/{ => _OLD}/plotHistogram.pl (100%) rename scripts/{ => _OLD}/plotLabel.pl (100%) rename scripts/{ => _OLD}/plotMA.pl (100%) rename scripts/{ => _OLD}/plotQQ.pl (100%) rename scripts/{ => _OLD}/plotQQsubsample.pl (100%) rename scripts/{ => _OLD}/plotSmoothScatter.pl (100%) rename scripts/{ => _OLD}/plotXY.pl (100%) rename scripts/{ => _OLD}/queue.pl (100%) rename scripts/{ => _OLD}/sam2fastq.pl (100%) rename scripts/{ => _OLD}/sample.pl (100%) rename scripts/{ => _OLD}/snpSift_filter_sample_to_number.pl (100%) rename scripts/{ => _OLD}/sortLine.py (100%) rename scripts/{ => _OLD}/splitChr.pl (100%) rename scripts/{ => _OLD}/statsNum.pl (100%) rename scripts/{ => _OLD}/swapCols.pl (100%) rename scripts/{ => _OLD}/transpose.pl (100%) rename scripts/{ => _OLD}/txt2fa.pl (100%) rename scripts/{ => _OLD}/txt2vcf.py (100%) rename scripts/{ => _OLD}/uniqCount.pl (100%) rename scripts/{ => _OLD}/uniqCut.pl (100%) rename scripts/{ => _OLD}/vcfAnnFirst.py (100%) rename scripts/{ => _OLD}/vcfBareBones.pl (100%) rename scripts/{ => _OLD}/vcfEffHighest.ORI.py (100%) rename scripts/{ => _OLD}/vcfEffOnePerLine.pl (100%) rename scripts/{ => _OLD}/vcfFilterSamples.pl (100%) rename scripts/{ => _OLD}/vcfInfoOnePerLine.pl (100%) rename scripts/{ => _OLD}/vcfOnlyAlts.pl (100%) rename scripts/{ => _OLD}/vcfReduceGenotypes.pl (100%) rename scripts/{ => _OLD}/vcfRefCorrect.py (100%) rename scripts/{ => _OLD}/wigSplit.pl (100%) rename scripts_build/{ => _OLD}/createBundles.pl (100%) rename scripts_build/{ => _OLD}/dbNSFP_analise_filed_counts.pl (100%) rename scripts_build/{ => _OLD}/ensemblVCF2hgvs.pl (100%) rename scripts_build/{ => _OLD}/ensembl_gtf_versions.py (100%) rename scripts_build/{ => _OLD}/ensembl_protein_transcriptId.sh (100%) rename scripts_build/{ => _OLD}/file2GenomeName.pl (100%) rename scripts_build/{ => _OLD}/genesTxtColumnNames.sh (100%) rename scripts_build/{ => _OLD}/gwascatalog2vcf.pl (100%) rename scripts_build/{ => _OLD}/hg19_proteinFasta2NM.pl (100%) rename scripts_build/{ => _OLD}/hg19_proteinFastaReplaceName.pl (100%) rename scripts_build/{ => _OLD}/make_check.pl (100%) rename scripts_build/{ => _OLD}/mirna2bed.pl (100%) rename scripts_build/{ => _OLD}/mirna2bed.sh (100%) rename scripts_build/{ => _OLD}/promoterSequences.sh (100%) rename scripts_build/{ => _OLD}/proteinFasta2NM.pl (100%) rename scripts_build/{ => _OLD}/randBedIntervals.pl (100%) rename scripts_build/{ => _OLD}/run_epigenome_analysis.sh (100%) rename scripts_build/{ => _OLD}/sam2fastq.pl (100%) rename scripts_build/{ => _OLD}/sift2vcf.pl (100%) rename scripts_build/{ => _OLD}/sift2vcf.sh (100%) rename scripts_build/{ => _OLD}/stats_monthly_usage.pl (100%) rename scripts_build/{ => _OLD}/test.Broad_NS_SYN.sh (100%) rename scripts_build/{ => dbNSFP}/dbNSFP_sort.pl (100%) rename scripts_build/{ => dbNSFP}/dbNSFP_split_by_chr.pl (100%) create mode 100644 scripts_build/dbSnp/GCF_000001405.40_GRCh38.p14_assembly_report.txt create mode 100644 scripts_build/dbSnp/chr2id.txt create mode 100644 scripts_build/dbSnp/convert_to_chr.py rename scripts_build/{ => pdb}/pdbCompoundLines.py (100%) rename scripts_build/{ => pdb}/pdbCompoundLines.sh (100%) delete mode 100644 spliceSites/u12_branch.pwm diff --git a/scripts/1kg.sh b/scripts/_OLD/1kg.sh similarity index 100% rename from scripts/1kg.sh rename to scripts/_OLD/1kg.sh diff --git a/scripts/annotate_demo.sh b/scripts/_OLD/annotate_demo.sh similarity index 100% rename from scripts/annotate_demo.sh rename to scripts/_OLD/annotate_demo.sh diff --git a/scripts/annotate_demo_GATK.sh b/scripts/_OLD/annotate_demo_GATK.sh similarity index 100% rename from scripts/annotate_demo_GATK.sh rename to scripts/_OLD/annotate_demo_GATK.sh diff --git a/scripts/bedEffOnePerLine.pl b/scripts/_OLD/bedEffOnePerLine.pl similarity index 100% rename from scripts/bedEffOnePerLine.pl rename to scripts/_OLD/bedEffOnePerLine.pl diff --git a/scripts/cgShore.pl b/scripts/_OLD/cgShore.pl similarity index 100% rename from scripts/cgShore.pl rename to scripts/_OLD/cgShore.pl diff --git a/scripts/cgShore.sh b/scripts/_OLD/cgShore.sh similarity index 100% rename from scripts/cgShore.sh rename to scripts/_OLD/cgShore.sh diff --git a/scripts/countColumns.py b/scripts/_OLD/countColumns.py similarity index 100% rename from scripts/countColumns.py rename to scripts/_OLD/countColumns.py diff --git a/scripts/db.pl b/scripts/_OLD/db.pl similarity index 100% rename from scripts/db.pl rename to scripts/_OLD/db.pl diff --git a/scripts/extractSequences.pl b/scripts/_OLD/extractSequences.pl similarity index 100% rename from scripts/extractSequences.pl rename to scripts/_OLD/extractSequences.pl diff --git a/scripts/fasta2tab.pl b/scripts/_OLD/fasta2tab.pl similarity index 100% rename from scripts/fasta2tab.pl rename to scripts/_OLD/fasta2tab.pl diff --git a/scripts/fastaSample.pl b/scripts/_OLD/fastaSample.pl similarity index 100% rename from scripts/fastaSample.pl rename to scripts/_OLD/fastaSample.pl diff --git a/scripts/fastaSplit.pl b/scripts/_OLD/fastaSplit.pl similarity index 100% rename from scripts/fastaSplit.pl rename to scripts/_OLD/fastaSplit.pl diff --git a/scripts/fastqSplit.pl b/scripts/_OLD/fastqSplit.pl similarity index 100% rename from scripts/fastqSplit.pl rename to scripts/_OLD/fastqSplit.pl diff --git a/scripts/filterBy.py b/scripts/_OLD/filterBy.py similarity index 100% rename from scripts/filterBy.py rename to scripts/_OLD/filterBy.py diff --git a/scripts/gffRemovePhase.pl b/scripts/_OLD/gffRemovePhase.pl similarity index 100% rename from scripts/gffRemovePhase.pl rename to scripts/_OLD/gffRemovePhase.pl diff --git a/scripts/isutf8.py b/scripts/_OLD/isutf8.py similarity index 100% rename from scripts/isutf8.py rename to scripts/_OLD/isutf8.py diff --git a/scripts/join.pl b/scripts/_OLD/join.pl similarity index 100% rename from scripts/join.pl rename to scripts/_OLD/join.pl diff --git a/scripts/joinSnpEff.pl b/scripts/_OLD/joinSnpEff.pl similarity index 100% rename from scripts/joinSnpEff.pl rename to scripts/_OLD/joinSnpEff.pl diff --git a/scripts/make_and_commit_docs.sh b/scripts/_OLD/make_and_commit_docs.sh similarity index 100% rename from scripts/make_and_commit_docs.sh rename to scripts/_OLD/make_and_commit_docs.sh diff --git a/scripts/nextProt_filter.pl b/scripts/_OLD/nextProt_filter.pl similarity index 100% rename from scripts/nextProt_filter.pl rename to scripts/_OLD/nextProt_filter.pl diff --git a/scripts/ped2vcf.py b/scripts/_OLD/ped2vcf.py similarity index 100% rename from scripts/ped2vcf.py rename to scripts/_OLD/ped2vcf.py diff --git a/scripts/plot.pl b/scripts/_OLD/plot.pl similarity index 100% rename from scripts/plot.pl rename to scripts/_OLD/plot.pl diff --git a/scripts/plotHistogram.pl b/scripts/_OLD/plotHistogram.pl similarity index 100% rename from scripts/plotHistogram.pl rename to scripts/_OLD/plotHistogram.pl diff --git a/scripts/plotLabel.pl b/scripts/_OLD/plotLabel.pl similarity index 100% rename from scripts/plotLabel.pl rename to scripts/_OLD/plotLabel.pl diff --git a/scripts/plotMA.pl b/scripts/_OLD/plotMA.pl similarity index 100% rename from scripts/plotMA.pl rename to scripts/_OLD/plotMA.pl diff --git a/scripts/plotQQ.pl b/scripts/_OLD/plotQQ.pl similarity index 100% rename from scripts/plotQQ.pl rename to scripts/_OLD/plotQQ.pl diff --git a/scripts/plotQQsubsample.pl b/scripts/_OLD/plotQQsubsample.pl similarity index 100% rename from scripts/plotQQsubsample.pl rename to scripts/_OLD/plotQQsubsample.pl diff --git a/scripts/plotSmoothScatter.pl b/scripts/_OLD/plotSmoothScatter.pl similarity index 100% rename from scripts/plotSmoothScatter.pl rename to scripts/_OLD/plotSmoothScatter.pl diff --git a/scripts/plotXY.pl b/scripts/_OLD/plotXY.pl similarity index 100% rename from scripts/plotXY.pl rename to scripts/_OLD/plotXY.pl diff --git a/scripts/queue.pl b/scripts/_OLD/queue.pl similarity index 100% rename from scripts/queue.pl rename to scripts/_OLD/queue.pl diff --git a/scripts/sam2fastq.pl b/scripts/_OLD/sam2fastq.pl similarity index 100% rename from scripts/sam2fastq.pl rename to scripts/_OLD/sam2fastq.pl diff --git a/scripts/sample.pl b/scripts/_OLD/sample.pl similarity index 100% rename from scripts/sample.pl rename to scripts/_OLD/sample.pl diff --git a/scripts/snpSift_filter_sample_to_number.pl b/scripts/_OLD/snpSift_filter_sample_to_number.pl similarity index 100% rename from scripts/snpSift_filter_sample_to_number.pl rename to scripts/_OLD/snpSift_filter_sample_to_number.pl diff --git a/scripts/sortLine.py b/scripts/_OLD/sortLine.py similarity index 100% rename from scripts/sortLine.py rename to scripts/_OLD/sortLine.py diff --git a/scripts/splitChr.pl b/scripts/_OLD/splitChr.pl similarity index 100% rename from scripts/splitChr.pl rename to scripts/_OLD/splitChr.pl diff --git a/scripts/statsNum.pl b/scripts/_OLD/statsNum.pl similarity index 100% rename from scripts/statsNum.pl rename to scripts/_OLD/statsNum.pl diff --git a/scripts/swapCols.pl b/scripts/_OLD/swapCols.pl similarity index 100% rename from scripts/swapCols.pl rename to scripts/_OLD/swapCols.pl diff --git a/scripts/transpose.pl b/scripts/_OLD/transpose.pl similarity index 100% rename from scripts/transpose.pl rename to scripts/_OLD/transpose.pl diff --git a/scripts/txt2fa.pl b/scripts/_OLD/txt2fa.pl similarity index 100% rename from scripts/txt2fa.pl rename to scripts/_OLD/txt2fa.pl diff --git a/scripts/txt2vcf.py b/scripts/_OLD/txt2vcf.py similarity index 100% rename from scripts/txt2vcf.py rename to scripts/_OLD/txt2vcf.py diff --git a/scripts/uniqCount.pl b/scripts/_OLD/uniqCount.pl similarity index 100% rename from scripts/uniqCount.pl rename to scripts/_OLD/uniqCount.pl diff --git a/scripts/uniqCut.pl b/scripts/_OLD/uniqCut.pl similarity index 100% rename from scripts/uniqCut.pl rename to scripts/_OLD/uniqCut.pl diff --git a/scripts/vcfAnnFirst.py b/scripts/_OLD/vcfAnnFirst.py similarity index 100% rename from scripts/vcfAnnFirst.py rename to scripts/_OLD/vcfAnnFirst.py diff --git a/scripts/vcfBareBones.pl b/scripts/_OLD/vcfBareBones.pl similarity index 100% rename from scripts/vcfBareBones.pl rename to scripts/_OLD/vcfBareBones.pl diff --git a/scripts/vcfEffHighest.ORI.py b/scripts/_OLD/vcfEffHighest.ORI.py similarity index 100% rename from scripts/vcfEffHighest.ORI.py rename to scripts/_OLD/vcfEffHighest.ORI.py diff --git a/scripts/vcfEffOnePerLine.pl b/scripts/_OLD/vcfEffOnePerLine.pl similarity index 100% rename from scripts/vcfEffOnePerLine.pl rename to scripts/_OLD/vcfEffOnePerLine.pl diff --git a/scripts/vcfFilterSamples.pl b/scripts/_OLD/vcfFilterSamples.pl similarity index 100% rename from scripts/vcfFilterSamples.pl rename to scripts/_OLD/vcfFilterSamples.pl diff --git a/scripts/vcfInfoOnePerLine.pl b/scripts/_OLD/vcfInfoOnePerLine.pl similarity index 100% rename from scripts/vcfInfoOnePerLine.pl rename to scripts/_OLD/vcfInfoOnePerLine.pl diff --git a/scripts/vcfOnlyAlts.pl b/scripts/_OLD/vcfOnlyAlts.pl similarity index 100% rename from scripts/vcfOnlyAlts.pl rename to scripts/_OLD/vcfOnlyAlts.pl diff --git a/scripts/vcfReduceGenotypes.pl b/scripts/_OLD/vcfReduceGenotypes.pl similarity index 100% rename from scripts/vcfReduceGenotypes.pl rename to scripts/_OLD/vcfReduceGenotypes.pl diff --git a/scripts/vcfRefCorrect.py b/scripts/_OLD/vcfRefCorrect.py similarity index 100% rename from scripts/vcfRefCorrect.py rename to scripts/_OLD/vcfRefCorrect.py diff --git a/scripts/wigSplit.pl b/scripts/_OLD/wigSplit.pl similarity index 100% rename from scripts/wigSplit.pl rename to scripts/_OLD/wigSplit.pl diff --git a/scripts_build/createBundles.pl b/scripts_build/_OLD/createBundles.pl similarity index 100% rename from scripts_build/createBundles.pl rename to scripts_build/_OLD/createBundles.pl diff --git a/scripts_build/dbNSFP_analise_filed_counts.pl b/scripts_build/_OLD/dbNSFP_analise_filed_counts.pl similarity index 100% rename from scripts_build/dbNSFP_analise_filed_counts.pl rename to scripts_build/_OLD/dbNSFP_analise_filed_counts.pl diff --git a/scripts_build/ensemblVCF2hgvs.pl b/scripts_build/_OLD/ensemblVCF2hgvs.pl similarity index 100% rename from scripts_build/ensemblVCF2hgvs.pl rename to scripts_build/_OLD/ensemblVCF2hgvs.pl diff --git a/scripts_build/ensembl_gtf_versions.py b/scripts_build/_OLD/ensembl_gtf_versions.py similarity index 100% rename from scripts_build/ensembl_gtf_versions.py rename to scripts_build/_OLD/ensembl_gtf_versions.py diff --git a/scripts_build/ensembl_protein_transcriptId.sh b/scripts_build/_OLD/ensembl_protein_transcriptId.sh similarity index 100% rename from scripts_build/ensembl_protein_transcriptId.sh rename to scripts_build/_OLD/ensembl_protein_transcriptId.sh diff --git a/scripts_build/file2GenomeName.pl b/scripts_build/_OLD/file2GenomeName.pl similarity index 100% rename from scripts_build/file2GenomeName.pl rename to scripts_build/_OLD/file2GenomeName.pl diff --git a/scripts_build/genesTxtColumnNames.sh b/scripts_build/_OLD/genesTxtColumnNames.sh similarity index 100% rename from scripts_build/genesTxtColumnNames.sh rename to scripts_build/_OLD/genesTxtColumnNames.sh diff --git a/scripts_build/gwascatalog2vcf.pl b/scripts_build/_OLD/gwascatalog2vcf.pl similarity index 100% rename from scripts_build/gwascatalog2vcf.pl rename to scripts_build/_OLD/gwascatalog2vcf.pl diff --git a/scripts_build/hg19_proteinFasta2NM.pl b/scripts_build/_OLD/hg19_proteinFasta2NM.pl similarity index 100% rename from scripts_build/hg19_proteinFasta2NM.pl rename to scripts_build/_OLD/hg19_proteinFasta2NM.pl diff --git a/scripts_build/hg19_proteinFastaReplaceName.pl b/scripts_build/_OLD/hg19_proteinFastaReplaceName.pl similarity index 100% rename from scripts_build/hg19_proteinFastaReplaceName.pl rename to scripts_build/_OLD/hg19_proteinFastaReplaceName.pl diff --git a/scripts_build/make_check.pl b/scripts_build/_OLD/make_check.pl similarity index 100% rename from scripts_build/make_check.pl rename to scripts_build/_OLD/make_check.pl diff --git a/scripts_build/mirna2bed.pl b/scripts_build/_OLD/mirna2bed.pl similarity index 100% rename from scripts_build/mirna2bed.pl rename to scripts_build/_OLD/mirna2bed.pl diff --git a/scripts_build/mirna2bed.sh b/scripts_build/_OLD/mirna2bed.sh similarity index 100% rename from scripts_build/mirna2bed.sh rename to scripts_build/_OLD/mirna2bed.sh diff --git a/scripts_build/promoterSequences.sh b/scripts_build/_OLD/promoterSequences.sh similarity index 100% rename from scripts_build/promoterSequences.sh rename to scripts_build/_OLD/promoterSequences.sh diff --git a/scripts_build/proteinFasta2NM.pl b/scripts_build/_OLD/proteinFasta2NM.pl similarity index 100% rename from scripts_build/proteinFasta2NM.pl rename to scripts_build/_OLD/proteinFasta2NM.pl diff --git a/scripts_build/randBedIntervals.pl b/scripts_build/_OLD/randBedIntervals.pl similarity index 100% rename from scripts_build/randBedIntervals.pl rename to scripts_build/_OLD/randBedIntervals.pl diff --git a/scripts_build/run_epigenome_analysis.sh b/scripts_build/_OLD/run_epigenome_analysis.sh similarity index 100% rename from scripts_build/run_epigenome_analysis.sh rename to scripts_build/_OLD/run_epigenome_analysis.sh diff --git a/scripts_build/sam2fastq.pl b/scripts_build/_OLD/sam2fastq.pl similarity index 100% rename from scripts_build/sam2fastq.pl rename to scripts_build/_OLD/sam2fastq.pl diff --git a/scripts_build/sift2vcf.pl b/scripts_build/_OLD/sift2vcf.pl similarity index 100% rename from scripts_build/sift2vcf.pl rename to scripts_build/_OLD/sift2vcf.pl diff --git a/scripts_build/sift2vcf.sh b/scripts_build/_OLD/sift2vcf.sh similarity index 100% rename from scripts_build/sift2vcf.sh rename to scripts_build/_OLD/sift2vcf.sh diff --git a/scripts_build/stats_monthly_usage.pl b/scripts_build/_OLD/stats_monthly_usage.pl similarity index 100% rename from scripts_build/stats_monthly_usage.pl rename to scripts_build/_OLD/stats_monthly_usage.pl diff --git a/scripts_build/test.Broad_NS_SYN.sh b/scripts_build/_OLD/test.Broad_NS_SYN.sh similarity index 100% rename from scripts_build/test.Broad_NS_SYN.sh rename to scripts_build/_OLD/test.Broad_NS_SYN.sh diff --git a/scripts_build/dbNSFP_sort.pl b/scripts_build/dbNSFP/dbNSFP_sort.pl similarity index 100% rename from scripts_build/dbNSFP_sort.pl rename to scripts_build/dbNSFP/dbNSFP_sort.pl diff --git a/scripts_build/dbNSFP_split_by_chr.pl b/scripts_build/dbNSFP/dbNSFP_split_by_chr.pl similarity index 100% rename from scripts_build/dbNSFP_split_by_chr.pl rename to scripts_build/dbNSFP/dbNSFP_split_by_chr.pl diff --git a/scripts_build/dbSnp/GCF_000001405.40_GRCh38.p14_assembly_report.txt b/scripts_build/dbSnp/GCF_000001405.40_GRCh38.p14_assembly_report.txt new file mode 100644 index 000000000..f80775956 --- /dev/null +++ b/scripts_build/dbSnp/GCF_000001405.40_GRCh38.p14_assembly_report.txt @@ -0,0 +1,773 @@ +# Assembly name: GRCh38.p14 +# Description: Genome Reference Consortium Human Build 38 patch release 14 (GRCh38.p14) +# Organism name: Homo sapiens (human) +# Taxid: 9606 +# BioProject: PRJNA31257 +# Submitter: Genome Reference Consortium +# Date: 2022-02-03 +# Synonyms: hg38 +# Assembly type: haploid-with-alt-loci +# Release type: patch +# Assembly level: Chromosome +# Genome representation: full +# RefSeq category: Reference Genome +# GenBank assembly accession: GCA_000001405.29 +# RefSeq assembly accession: GCF_000001405.40 +# RefSeq assembly and GenBank assemblies identical: no +# +## Assembly-Units: +## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name +## GCA_000001305.2 GCF_000001305.16 Primary Assembly +## GCA_000005045.27 GCF_000005045.26 PATCHES +## GCA_000001315.2 GCF_000001315.3 ALT_REF_LOCI_1 +## GCA_000001325.2 GCF_000001325.3 ALT_REF_LOCI_2 +## GCA_000001335.2 GCF_000001335.2 ALT_REF_LOCI_3 +## GCA_000001345.2 GCF_000001345.2 ALT_REF_LOCI_4 +## GCA_000001355.2 GCF_000001355.2 ALT_REF_LOCI_5 +## GCA_000001365.2 GCF_000001365.3 ALT_REF_LOCI_6 +## GCA_000001375.2 GCF_000001375.2 ALT_REF_LOCI_7 +## GCA_000510225.1 GCF_000510225.1 ALT_REF_LOCI_8 +## GCA_000510235.1 GCF_000510235.1 ALT_REF_LOCI_9 +## GCA_000509915.1 GCF_000509915.1 ALT_REF_LOCI_10 +## GCA_000509925.1 GCF_000509925.1 ALT_REF_LOCI_11 +## GCA_000509935.1 GCF_000509935.1 ALT_REF_LOCI_12 +## GCA_000509945.1 GCF_000509945.1 ALT_REF_LOCI_13 +## GCA_000509955.1 GCF_000509955.1 ALT_REF_LOCI_14 +## GCA_000509965.1 GCF_000509965.1 ALT_REF_LOCI_15 +## GCA_000509975.1 GCF_000509975.1 ALT_REF_LOCI_16 +## GCA_000509985.1 GCF_000509985.1 ALT_REF_LOCI_17 +## GCA_000509995.1 GCF_000509995.1 ALT_REF_LOCI_18 +## GCA_000510005.1 GCF_000510005.1 ALT_REF_LOCI_19 +## GCA_000510015.1 GCF_000510015.1 ALT_REF_LOCI_20 +## GCA_000510025.1 GCF_000510025.1 ALT_REF_LOCI_21 +## GCA_000510035.1 GCF_000510035.1 ALT_REF_LOCI_22 +## GCA_000510045.1 GCF_000510045.1 ALT_REF_LOCI_23 +## GCA_000510055.1 GCF_000510055.1 ALT_REF_LOCI_24 +## GCA_000510065.1 GCF_000510065.1 ALT_REF_LOCI_25 +## GCA_000510075.1 GCF_000510075.1 ALT_REF_LOCI_26 +## GCA_000510085.1 GCF_000510085.1 ALT_REF_LOCI_27 +## GCA_000510095.1 GCF_000510095.1 ALT_REF_LOCI_28 +## GCA_000510105.1 GCF_000510105.1 ALT_REF_LOCI_29 +## GCA_000510125.1 GCF_000510125.1 ALT_REF_LOCI_30 +## GCA_000510135.1 GCF_000510135.1 ALT_REF_LOCI_31 +## GCA_000510145.1 GCF_000510145.1 ALT_REF_LOCI_32 +## GCA_000510155.1 GCF_000510155.1 ALT_REF_LOCI_33 +## GCA_000510165.1 GCF_000510165.1 ALT_REF_LOCI_34 +## GCA_000510175.1 GCF_000510175.1 ALT_REF_LOCI_35 +## GCA_000006015.1 GCF_000006015.1 non-nuclear +# +# Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by +# unlocalized scaffolds. +# Unplaced scaffolds are listed at the end. +# RefSeq is equal or derived from GenBank object. +# +# Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name +1 assembled-molecule 1 Chromosome CM000663.2 = NC_000001.11 Primary Assembly 248956422 chr1 +2 assembled-molecule 2 Chromosome CM000664.2 = NC_000002.12 Primary Assembly 242193529 chr2 +3 assembled-molecule 3 Chromosome CM000665.2 = NC_000003.12 Primary Assembly 198295559 chr3 +4 assembled-molecule 4 Chromosome CM000666.2 = NC_000004.12 Primary Assembly 190214555 chr4 +5 assembled-molecule 5 Chromosome CM000667.2 = NC_000005.10 Primary Assembly 181538259 chr5 +6 assembled-molecule 6 Chromosome CM000668.2 = NC_000006.12 Primary Assembly 170805979 chr6 +7 assembled-molecule 7 Chromosome CM000669.2 = NC_000007.14 Primary Assembly 159345973 chr7 +8 assembled-molecule 8 Chromosome CM000670.2 = NC_000008.11 Primary Assembly 145138636 chr8 +9 assembled-molecule 9 Chromosome CM000671.2 = NC_000009.12 Primary Assembly 138394717 chr9 +10 assembled-molecule 10 Chromosome CM000672.2 = NC_000010.11 Primary Assembly 133797422 chr10 +11 assembled-molecule 11 Chromosome CM000673.2 = NC_000011.10 Primary Assembly 135086622 chr11 +12 assembled-molecule 12 Chromosome CM000674.2 = NC_000012.12 Primary Assembly 133275309 chr12 +13 assembled-molecule 13 Chromosome CM000675.2 = NC_000013.11 Primary Assembly 114364328 chr13 +14 assembled-molecule 14 Chromosome CM000676.2 = NC_000014.9 Primary Assembly 107043718 chr14 +15 assembled-molecule 15 Chromosome CM000677.2 = NC_000015.10 Primary Assembly 101991189 chr15 +16 assembled-molecule 16 Chromosome CM000678.2 = NC_000016.10 Primary Assembly 90338345 chr16 +17 assembled-molecule 17 Chromosome CM000679.2 = NC_000017.11 Primary Assembly 83257441 chr17 +18 assembled-molecule 18 Chromosome CM000680.2 = NC_000018.10 Primary Assembly 80373285 chr18 +19 assembled-molecule 19 Chromosome CM000681.2 = NC_000019.10 Primary Assembly 58617616 chr19 +20 assembled-molecule 20 Chromosome CM000682.2 = NC_000020.11 Primary Assembly 64444167 chr20 +21 assembled-molecule 21 Chromosome CM000683.2 = NC_000021.9 Primary Assembly 46709983 chr21 +22 assembled-molecule 22 Chromosome CM000684.2 = NC_000022.11 Primary Assembly 50818468 chr22 +X assembled-molecule X Chromosome CM000685.2 = NC_000023.11 Primary Assembly 156040895 chrX +Y assembled-molecule Y Chromosome CM000686.2 = NC_000024.10 Primary Assembly 57227415 chrY +HSCHR1_CTG1_UNLOCALIZED unlocalized-scaffold 1 Chromosome KI270706.1 = NT_187361.1 Primary Assembly 175055 chr1_KI270706v1_random +HSCHR1_CTG2_UNLOCALIZED unlocalized-scaffold 1 Chromosome KI270707.1 = NT_187362.1 Primary Assembly 32032 chr1_KI270707v1_random +HSCHR1_CTG3_UNLOCALIZED unlocalized-scaffold 1 Chromosome KI270708.1 = NT_187363.1 Primary Assembly 127682 chr1_KI270708v1_random +HSCHR1_CTG4_UNLOCALIZED unlocalized-scaffold 1 Chromosome KI270709.1 = NT_187364.1 Primary Assembly 66860 chr1_KI270709v1_random +HSCHR1_CTG5_UNLOCALIZED unlocalized-scaffold 1 Chromosome KI270710.1 = NT_187365.1 Primary Assembly 40176 chr1_KI270710v1_random +HSCHR1_CTG6_UNLOCALIZED unlocalized-scaffold 1 Chromosome KI270711.1 = NT_187366.1 Primary Assembly 42210 chr1_KI270711v1_random +HSCHR1_CTG7_UNLOCALIZED unlocalized-scaffold 1 Chromosome KI270712.1 = NT_187367.1 Primary Assembly 176043 chr1_KI270712v1_random +HSCHR1_CTG8_UNLOCALIZED unlocalized-scaffold 1 Chromosome KI270713.1 = NT_187368.1 Primary Assembly 40745 chr1_KI270713v1_random +HSCHR1_CTG9_UNLOCALIZED unlocalized-scaffold 1 Chromosome KI270714.1 = NT_187369.1 Primary Assembly 41717 chr1_KI270714v1_random +HSCHR2_RANDOM_CTG1 unlocalized-scaffold 2 Chromosome KI270715.1 = NT_187370.1 Primary Assembly 161471 chr2_KI270715v1_random +HSCHR2_RANDOM_CTG2 unlocalized-scaffold 2 Chromosome KI270716.1 = NT_187371.1 Primary Assembly 153799 chr2_KI270716v1_random +HSCHR3UN_CTG2 unlocalized-scaffold 3 Chromosome GL000221.1 = NT_167215.1 Primary Assembly 155397 chr3_GL000221v1_random +HSCHR4_RANDOM_CTG4 unlocalized-scaffold 4 Chromosome GL000008.2 = NT_113793.3 Primary Assembly 209709 chr4_GL000008v2_random +HSCHR5_RANDOM_CTG1 unlocalized-scaffold 5 Chromosome GL000208.1 = NT_113948.1 Primary Assembly 92689 chr5_GL000208v1_random +HSCHR9_UNLOCALIZED_CTG1 unlocalized-scaffold 9 Chromosome KI270717.1 = NT_187372.1 Primary Assembly 40062 chr9_KI270717v1_random +HSCHR9_UNLOCALIZED_CTG2 unlocalized-scaffold 9 Chromosome KI270718.1 = NT_187373.1 Primary Assembly 38054 chr9_KI270718v1_random +HSCHR9_UNLOCALIZED_CTG3 unlocalized-scaffold 9 Chromosome KI270719.1 = NT_187374.1 Primary Assembly 176845 chr9_KI270719v1_random +HSCHR9_UNLOCALIZED_CTG4 unlocalized-scaffold 9 Chromosome KI270720.1 = NT_187375.1 Primary Assembly 39050 chr9_KI270720v1_random +HSCHR11_CTG1_UNLOCALIZED unlocalized-scaffold 11 Chromosome KI270721.1 <> na Primary Assembly 100316 chr11_KI270721v1_random +HSCHR14_CTG1_UNLOCALIZED unlocalized-scaffold 14 Chromosome GL000009.2 = NT_113796.3 Primary Assembly 201709 chr14_GL000009v2_random +HSCHR14_CTG4_UNLOCALIZED unlocalized-scaffold 14 Chromosome GL000194.1 = NT_113888.1 Primary Assembly 191469 chr14_GL000194v1_random +HSCHR14_CTG2_UNLOCALIZED unlocalized-scaffold 14 Chromosome GL000225.1 = NT_167219.1 Primary Assembly 211173 chr14_GL000225v1_random +HSCHR14_CTG3_UNLOCALIZED unlocalized-scaffold 14 Chromosome KI270722.1 = NT_187377.1 Primary Assembly 194050 chr14_KI270722v1_random +HSCHR14_CTG5_UNLOCALIZED unlocalized-scaffold 14 Chromosome KI270723.1 = NT_187378.1 Primary Assembly 38115 chr14_KI270723v1_random +HSCHR14_CTG6_UNLOCALIZED unlocalized-scaffold 14 Chromosome KI270724.1 = NT_187379.1 Primary Assembly 39555 chr14_KI270724v1_random +HSCHR14_CTG7_UNLOCALIZED unlocalized-scaffold 14 Chromosome KI270725.1 = NT_187380.1 Primary Assembly 172810 chr14_KI270725v1_random +HSCHR14_CTG8_UNLOCALIZED unlocalized-scaffold 14 Chromosome KI270726.1 = NT_187381.1 Primary Assembly 43739 chr14_KI270726v1_random +HSCHR15_RANDOM_CTG1 unlocalized-scaffold 15 Chromosome KI270727.1 = NT_187382.1 Primary Assembly 448248 chr15_KI270727v1_random +HSCHR16_RANDOM_CTG1 unlocalized-scaffold 16 Chromosome KI270728.1 = NT_187383.1 Primary Assembly 1872759 chr16_KI270728v1_random +HSCHR17_RANDOM_CTG3 unlocalized-scaffold 17 Chromosome GL000205.2 = NT_113930.2 Primary Assembly 185591 chr17_GL000205v2_random +HSCHR17_RANDOM_CTG4 unlocalized-scaffold 17 Chromosome KI270729.1 = NT_187384.1 Primary Assembly 280839 chr17_KI270729v1_random +HSCHR17_RANDOM_CTG5 unlocalized-scaffold 17 Chromosome KI270730.1 = NT_187385.1 Primary Assembly 112551 chr17_KI270730v1_random +HSCHR22_UNLOCALIZED_CTG1 unlocalized-scaffold 22 Chromosome KI270731.1 = NT_187386.1 Primary Assembly 150754 chr22_KI270731v1_random +HSCHR22_UNLOCALIZED_CTG2 unlocalized-scaffold 22 Chromosome KI270732.1 = NT_187387.1 Primary Assembly 41543 chr22_KI270732v1_random +HSCHR22_UNLOCALIZED_CTG3 unlocalized-scaffold 22 Chromosome KI270733.1 = NT_187388.1 Primary Assembly 179772 chr22_KI270733v1_random +HSCHR22_UNLOCALIZED_CTG4 unlocalized-scaffold 22 Chromosome KI270734.1 <> na Primary Assembly 165050 chr22_KI270734v1_random +HSCHR22_UNLOCALIZED_CTG5 unlocalized-scaffold 22 Chromosome KI270735.1 = NT_187390.1 Primary Assembly 42811 chr22_KI270735v1_random +HSCHR22_UNLOCALIZED_CTG6 unlocalized-scaffold 22 Chromosome KI270736.1 = NT_187391.1 Primary Assembly 181920 chr22_KI270736v1_random +HSCHR22_UNLOCALIZED_CTG7 unlocalized-scaffold 22 Chromosome KI270737.1 = NT_187392.1 Primary Assembly 103838 chr22_KI270737v1_random +HSCHR22_UNLOCALIZED_CTG8 unlocalized-scaffold 22 Chromosome KI270738.1 = NT_187393.1 Primary Assembly 99375 chr22_KI270738v1_random +HSCHR22_UNLOCALIZED_CTG9 unlocalized-scaffold 22 Chromosome KI270739.1 = NT_187394.1 Primary Assembly 73985 chr22_KI270739v1_random +HSCHRY_RANDOM_CTG1 unlocalized-scaffold Y Chromosome KI270740.1 = NT_187395.1 Primary Assembly 37240 chrY_KI270740v1_random +HSCHRUN_RANDOM_CTG1 unplaced-scaffold na na GL000195.1 = NT_113901.1 Primary Assembly 182896 chrUn_GL000195v1 +HSCHRUN_RANDOM_CTG2 unplaced-scaffold na na GL000213.1 = NT_167208.1 Primary Assembly 164239 chrUn_GL000213v1 +HSCHRUN_RANDOM_CTG4 unplaced-scaffold na na GL000214.1 = NT_167209.1 Primary Assembly 137718 chrUn_GL000214v1 +HSCHRUN_RANDOM_CTG6 unplaced-scaffold na na GL000216.2 = NT_167211.2 Primary Assembly 176608 chrUn_GL000216v2 +HSCHRUN_RANDOM_CTG9 unplaced-scaffold na na GL000218.1 = NT_113889.1 Primary Assembly 161147 chrUn_GL000218v1 +HSCHRUN_RANDOM_CTG10 unplaced-scaffold na na GL000219.1 = NT_167213.1 Primary Assembly 179198 chrUn_GL000219v1 +HSCHRUN_RANDOM_CTG11 unplaced-scaffold na na GL000220.1 = NT_167214.1 Primary Assembly 161802 chrUn_GL000220v1 +HSCHRUN_RANDOM_CTG16 unplaced-scaffold na na GL000224.1 = NT_167218.1 Primary Assembly 179693 chrUn_GL000224v1 +HSCHRUN_RANDOM_CTG19 unplaced-scaffold na na GL000226.1 = NT_167220.1 Primary Assembly 15008 chrUn_GL000226v1 +HSCHRUN_RANDOM_100 unplaced-scaffold na na KI270302.1 = NT_187396.1 Primary Assembly 2274 chrUn_KI270302v1 +HSCHRUN_RANDOM_102 unplaced-scaffold na na KI270303.1 = NT_187398.1 Primary Assembly 1942 chrUn_KI270303v1 +HSCHRUN_RANDOM_101 unplaced-scaffold na na KI270304.1 = NT_187397.1 Primary Assembly 2165 chrUn_KI270304v1 +HSCHRUN_RANDOM_103 unplaced-scaffold na na KI270305.1 = NT_187399.1 Primary Assembly 1472 chrUn_KI270305v1 +HSCHRUN_RANDOM_106 unplaced-scaffold na na KI270310.1 = NT_187402.1 Primary Assembly 1201 chrUn_KI270310v1 +HSCHRUN_RANDOM_110 unplaced-scaffold na na KI270311.1 = NT_187406.1 Primary Assembly 12399 chrUn_KI270311v1 +HSCHRUN_RANDOM_109 unplaced-scaffold na na KI270312.1 = NT_187405.1 Primary Assembly 998 chrUn_KI270312v1 +HSCHRUN_RANDOM_108 unplaced-scaffold na na KI270315.1 = NT_187404.1 Primary Assembly 2276 chrUn_KI270315v1 +HSCHRUN_RANDOM_107 unplaced-scaffold na na KI270316.1 = NT_187403.1 Primary Assembly 1444 chrUn_KI270316v1 +HSCHRUN_RANDOM_111 unplaced-scaffold na na KI270317.1 = NT_187407.1 Primary Assembly 37690 chrUn_KI270317v1 +HSCHRUN_RANDOM_105 unplaced-scaffold na na KI270320.1 = NT_187401.1 Primary Assembly 4416 chrUn_KI270320v1 +HSCHRUN_RANDOM_104 unplaced-scaffold na na KI270322.1 = NT_187400.1 Primary Assembly 21476 chrUn_KI270322v1 +HSCHRUN_RANDOM_167 unplaced-scaffold na na KI270329.1 = NT_187459.1 Primary Assembly 1040 chrUn_KI270329v1 +HSCHRUN_RANDOM_166 unplaced-scaffold na na KI270330.1 = NT_187458.1 Primary Assembly 1652 chrUn_KI270330v1 +HSCHRUN_RANDOM_169 unplaced-scaffold na na KI270333.1 = NT_187461.1 Primary Assembly 2699 chrUn_KI270333v1 +HSCHRUN_RANDOM_168 unplaced-scaffold na na KI270334.1 = NT_187460.1 Primary Assembly 1368 chrUn_KI270334v1 +HSCHRUN_RANDOM_170 unplaced-scaffold na na KI270335.1 = NT_187462.1 Primary Assembly 1048 chrUn_KI270335v1 +HSCHRUN_RANDOM_173 unplaced-scaffold na na KI270336.1 = NT_187465.1 Primary Assembly 1026 chrUn_KI270336v1 +HSCHRUN_RANDOM_174 unplaced-scaffold na na KI270337.1 = NT_187466.1 Primary Assembly 1121 chrUn_KI270337v1 +HSCHRUN_RANDOM_171 unplaced-scaffold na na KI270338.1 = NT_187463.1 Primary Assembly 1428 chrUn_KI270338v1 +HSCHRUN_RANDOM_172 unplaced-scaffold na na KI270340.1 = NT_187464.1 Primary Assembly 1428 chrUn_KI270340v1 +HSCHRUN_RANDOM_177 unplaced-scaffold na na KI270362.1 = NT_187469.1 Primary Assembly 3530 chrUn_KI270362v1 +HSCHRUN_RANDOM_175 unplaced-scaffold na na KI270363.1 = NT_187467.1 Primary Assembly 1803 chrUn_KI270363v1 +HSCHRUN_RANDOM_176 unplaced-scaffold na na KI270364.1 = NT_187468.1 Primary Assembly 2855 chrUn_KI270364v1 +HSCHRUN_RANDOM_178 unplaced-scaffold na na KI270366.1 = NT_187470.1 Primary Assembly 8320 chrUn_KI270366v1 +HSCHRUN_RANDOM_202 unplaced-scaffold na na KI270371.1 = NT_187494.1 Primary Assembly 2805 chrUn_KI270371v1 +HSCHRUN_RANDOM_199 unplaced-scaffold na na KI270372.1 = NT_187491.1 Primary Assembly 1650 chrUn_KI270372v1 +HSCHRUN_RANDOM_200 unplaced-scaffold na na KI270373.1 = NT_187492.1 Primary Assembly 1451 chrUn_KI270373v1 +HSCHRUN_RANDOM_198 unplaced-scaffold na na KI270374.1 = NT_187490.1 Primary Assembly 2656 chrUn_KI270374v1 +HSCHRUN_RANDOM_201 unplaced-scaffold na na KI270375.1 = NT_187493.1 Primary Assembly 2378 chrUn_KI270375v1 +HSCHRUN_RANDOM_197 unplaced-scaffold na na KI270376.1 = NT_187489.1 Primary Assembly 1136 chrUn_KI270376v1 +HSCHRUN_RANDOM_179 unplaced-scaffold na na KI270378.1 = NT_187471.1 Primary Assembly 1048 chrUn_KI270378v1 +HSCHRUN_RANDOM_180 unplaced-scaffold na na KI270379.1 = NT_187472.1 Primary Assembly 1045 chrUn_KI270379v1 +HSCHRUN_RANDOM_194 unplaced-scaffold na na KI270381.1 = NT_187486.1 Primary Assembly 1930 chrUn_KI270381v1 +HSCHRUN_RANDOM_196 unplaced-scaffold na na KI270382.1 = NT_187488.1 Primary Assembly 4215 chrUn_KI270382v1 +HSCHRUN_RANDOM_190 unplaced-scaffold na na KI270383.1 = NT_187482.1 Primary Assembly 1750 chrUn_KI270383v1 +HSCHRUN_RANDOM_192 unplaced-scaffold na na KI270384.1 = NT_187484.1 Primary Assembly 1658 chrUn_KI270384v1 +HSCHRUN_RANDOM_195 unplaced-scaffold na na KI270385.1 = NT_187487.1 Primary Assembly 990 chrUn_KI270385v1 +HSCHRUN_RANDOM_188 unplaced-scaffold na na KI270386.1 = NT_187480.1 Primary Assembly 1788 chrUn_KI270386v1 +HSCHRUN_RANDOM_183 unplaced-scaffold na na KI270387.1 = NT_187475.1 Primary Assembly 1537 chrUn_KI270387v1 +HSCHRUN_RANDOM_186 unplaced-scaffold na na KI270388.1 = NT_187478.1 Primary Assembly 1216 chrUn_KI270388v1 +HSCHRUN_RANDOM_181 unplaced-scaffold na na KI270389.1 = NT_187473.1 Primary Assembly 1298 chrUn_KI270389v1 +HSCHRUN_RANDOM_182 unplaced-scaffold na na KI270390.1 = NT_187474.1 Primary Assembly 2387 chrUn_KI270390v1 +HSCHRUN_RANDOM_189 unplaced-scaffold na na KI270391.1 = NT_187481.1 Primary Assembly 1484 chrUn_KI270391v1 +HSCHRUN_RANDOM_193 unplaced-scaffold na na KI270392.1 = NT_187485.1 Primary Assembly 971 chrUn_KI270392v1 +HSCHRUN_RANDOM_191 unplaced-scaffold na na KI270393.1 = NT_187483.1 Primary Assembly 1308 chrUn_KI270393v1 +HSCHRUN_RANDOM_187 unplaced-scaffold na na KI270394.1 = NT_187479.1 Primary Assembly 970 chrUn_KI270394v1 +HSCHRUN_RANDOM_184 unplaced-scaffold na na KI270395.1 = NT_187476.1 Primary Assembly 1143 chrUn_KI270395v1 +HSCHRUN_RANDOM_185 unplaced-scaffold na na KI270396.1 = NT_187477.1 Primary Assembly 1880 chrUn_KI270396v1 +HSCHRUN_RANDOM_113 unplaced-scaffold na na KI270411.1 = NT_187409.1 Primary Assembly 2646 chrUn_KI270411v1 +HSCHRUN_RANDOM_112 unplaced-scaffold na na KI270412.1 = NT_187408.1 Primary Assembly 1179 chrUn_KI270412v1 +HSCHRUN_RANDOM_114 unplaced-scaffold na na KI270414.1 = NT_187410.1 Primary Assembly 2489 chrUn_KI270414v1 +HSCHRUN_RANDOM_119 unplaced-scaffold na na KI270417.1 = NT_187415.1 Primary Assembly 2043 chrUn_KI270417v1 +HSCHRUN_RANDOM_116 unplaced-scaffold na na KI270418.1 = NT_187412.1 Primary Assembly 2145 chrUn_KI270418v1 +HSCHRUN_RANDOM_115 unplaced-scaffold na na KI270419.1 = NT_187411.1 Primary Assembly 1029 chrUn_KI270419v1 +HSCHRUN_RANDOM_117 unplaced-scaffold na na KI270420.1 = NT_187413.1 Primary Assembly 2321 chrUn_KI270420v1 +HSCHRUN_RANDOM_120 unplaced-scaffold na na KI270422.1 = NT_187416.1 Primary Assembly 1445 chrUn_KI270422v1 +HSCHRUN_RANDOM_121 unplaced-scaffold na na KI270423.1 = NT_187417.1 Primary Assembly 981 chrUn_KI270423v1 +HSCHRUN_RANDOM_118 unplaced-scaffold na na KI270424.1 = NT_187414.1 Primary Assembly 2140 chrUn_KI270424v1 +HSCHRUN_RANDOM_122 unplaced-scaffold na na KI270425.1 = NT_187418.1 Primary Assembly 1884 chrUn_KI270425v1 +HSCHRUN_RANDOM_123 unplaced-scaffold na na KI270429.1 = NT_187419.1 Primary Assembly 1361 chrUn_KI270429v1 +HSCHRUN_RANDOM_128 unplaced-scaffold na na KI270435.1 = NT_187424.1 Primary Assembly 92983 chrUn_KI270435v1 +HSCHRUN_RANDOM_129 unplaced-scaffold na na KI270438.1 = NT_187425.1 Primary Assembly 112505 chrUn_KI270438v1 +HSCHRUN_RANDOM_124 unplaced-scaffold na na KI270442.1 = NT_187420.1 Primary Assembly 392061 chrUn_KI270442v1 +HSCHRUN_RANDOM_203 unplaced-scaffold na na KI270448.1 = NT_187495.1 Primary Assembly 7992 chrUn_KI270448v1 +HSCHRUN_RANDOM_126 unplaced-scaffold na na KI270465.1 = NT_187422.1 Primary Assembly 1774 chrUn_KI270465v1 +HSCHRUN_RANDOM_125 unplaced-scaffold na na KI270466.1 = NT_187421.1 Primary Assembly 1233 chrUn_KI270466v1 +HSCHRUN_RANDOM_127 unplaced-scaffold na na KI270467.1 = NT_187423.1 Primary Assembly 3920 chrUn_KI270467v1 +HSCHRUN_RANDOM_130 unplaced-scaffold na na KI270468.1 = NT_187426.1 Primary Assembly 4055 chrUn_KI270468v1 +HSCHRUN_RANDOM_141 unplaced-scaffold na na KI270507.1 = NT_187437.1 Primary Assembly 5353 chrUn_KI270507v1 +HSCHRUN_RANDOM_134 unplaced-scaffold na na KI270508.1 = NT_187430.1 Primary Assembly 1951 chrUn_KI270508v1 +HSCHRUN_RANDOM_132 unplaced-scaffold na na KI270509.1 = NT_187428.1 Primary Assembly 2318 chrUn_KI270509v1 +HSCHRUN_RANDOM_131 unplaced-scaffold na na KI270510.1 = NT_187427.1 Primary Assembly 2415 chrUn_KI270510v1 +HSCHRUN_RANDOM_139 unplaced-scaffold na na KI270511.1 = NT_187435.1 Primary Assembly 8127 chrUn_KI270511v1 +HSCHRUN_RANDOM_136 unplaced-scaffold na na KI270512.1 = NT_187432.1 Primary Assembly 22689 chrUn_KI270512v1 +HSCHRUN_RANDOM_140 unplaced-scaffold na na KI270515.1 = NT_187436.1 Primary Assembly 6361 chrUn_KI270515v1 +HSCHRUN_RANDOM_135 unplaced-scaffold na na KI270516.1 = NT_187431.1 Primary Assembly 1300 chrUn_KI270516v1 +HSCHRUN_RANDOM_142 unplaced-scaffold na na KI270517.1 = NT_187438.1 Primary Assembly 3253 chrUn_KI270517v1 +HSCHRUN_RANDOM_133 unplaced-scaffold na na KI270518.1 = NT_187429.1 Primary Assembly 2186 chrUn_KI270518v1 +HSCHRUN_RANDOM_137 unplaced-scaffold na na KI270519.1 = NT_187433.1 Primary Assembly 138126 chrUn_KI270519v1 +HSCHRUN_RANDOM_204 unplaced-scaffold na na KI270521.1 = NT_187496.1 Primary Assembly 7642 chrUn_KI270521v1 +HSCHRUN_RANDOM_138 unplaced-scaffold na na KI270522.1 = NT_187434.1 Primary Assembly 5674 chrUn_KI270522v1 +HSCHRUN_RANDOM_144 unplaced-scaffold na na KI270528.1 = NT_187440.1 Primary Assembly 2983 chrUn_KI270528v1 +HSCHRUN_RANDOM_143 unplaced-scaffold na na KI270529.1 = NT_187439.1 Primary Assembly 1899 chrUn_KI270529v1 +HSCHRUN_RANDOM_145 unplaced-scaffold na na KI270530.1 = NT_187441.1 Primary Assembly 2168 chrUn_KI270530v1 +HSCHRUN_RANDOM_147 unplaced-scaffold na na KI270538.1 = NT_187443.1 Primary Assembly 91309 chrUn_KI270538v1 +HSCHRUN_RANDOM_146 unplaced-scaffold na na KI270539.1 = NT_187442.1 Primary Assembly 993 chrUn_KI270539v1 +HSCHRUN_RANDOM_148 unplaced-scaffold na na KI270544.1 = NT_187444.1 Primary Assembly 1202 chrUn_KI270544v1 +HSCHRUN_RANDOM_149 unplaced-scaffold na na KI270548.1 = NT_187445.1 Primary Assembly 1599 chrUn_KI270548v1 +HSCHRUN_RANDOM_158 unplaced-scaffold na na KI270579.1 = NT_187450.1 Primary Assembly 31033 chrUn_KI270579v1 +HSCHRUN_RANDOM_156 unplaced-scaffold na na KI270580.1 = NT_187448.1 Primary Assembly 1553 chrUn_KI270580v1 +HSCHRUN_RANDOM_157 unplaced-scaffold na na KI270581.1 = NT_187449.1 Primary Assembly 7046 chrUn_KI270581v1 +HSCHRUN_RANDOM_162 unplaced-scaffold na na KI270582.1 = NT_187454.1 Primary Assembly 6504 chrUn_KI270582v1 +HSCHRUN_RANDOM_154 unplaced-scaffold na na KI270583.1 = NT_187446.1 Primary Assembly 1400 chrUn_KI270583v1 +HSCHRUN_RANDOM_161 unplaced-scaffold na na KI270584.1 = NT_187453.1 Primary Assembly 4513 chrUn_KI270584v1 +HSCHRUN_RANDOM_155 unplaced-scaffold na na KI270587.1 = NT_187447.1 Primary Assembly 2969 chrUn_KI270587v1 +HSCHRUN_RANDOM_163 unplaced-scaffold na na KI270588.1 = NT_187455.1 Primary Assembly 6158 chrUn_KI270588v1 +HSCHRUN_RANDOM_159 unplaced-scaffold na na KI270589.1 = NT_187451.1 Primary Assembly 44474 chrUn_KI270589v1 +HSCHRUN_RANDOM_160 unplaced-scaffold na na KI270590.1 = NT_187452.1 Primary Assembly 4685 chrUn_KI270590v1 +HSCHRUN_RANDOM_165 unplaced-scaffold na na KI270591.1 = NT_187457.1 Primary Assembly 5796 chrUn_KI270591v1 +HSCHRUN_RANDOM_164 unplaced-scaffold na na KI270593.1 = NT_187456.1 Primary Assembly 3041 chrUn_KI270593v1 +HSCHRUN_RANDOM_CTG17 unplaced-scaffold na na KI270741.1 = NT_187497.1 Primary Assembly 157432 chrUn_KI270741v1 +HSCHRUN_RANDOM_CTG42 unplaced-scaffold na na KI270742.1 = NT_187513.1 Primary Assembly 186739 chrUn_KI270742v1 +HSCHRUN_RANDOM_CTG20 unplaced-scaffold na na KI270743.1 = NT_187498.1 Primary Assembly 210658 chrUn_KI270743v1 +HSCHRUN_RANDOM_CTG21 unplaced-scaffold na na KI270744.1 = NT_187499.1 Primary Assembly 168472 chrUn_KI270744v1 +HSCHRUN_RANDOM_CTG22 unplaced-scaffold na na KI270745.1 = NT_187500.1 Primary Assembly 41891 chrUn_KI270745v1 +HSCHRUN_RANDOM_CTG23 unplaced-scaffold na na KI270746.1 = NT_187501.1 Primary Assembly 66486 chrUn_KI270746v1 +HSCHRUN_RANDOM_CTG24 unplaced-scaffold na na KI270747.1 = NT_187502.1 Primary Assembly 198735 chrUn_KI270747v1 +HSCHRUN_RANDOM_CTG25 unplaced-scaffold na na KI270748.1 = NT_187503.1 Primary Assembly 93321 chrUn_KI270748v1 +HSCHRUN_RANDOM_CTG26 unplaced-scaffold na na KI270749.1 = NT_187504.1 Primary Assembly 158759 chrUn_KI270749v1 +HSCHRUN_RANDOM_CTG27 unplaced-scaffold na na KI270750.1 = NT_187505.1 Primary Assembly 148850 chrUn_KI270750v1 +HSCHRUN_RANDOM_CTG28 unplaced-scaffold na na KI270751.1 = NT_187506.1 Primary Assembly 150742 chrUn_KI270751v1 +HSCHRUN_RANDOM_CTG29 unplaced-scaffold na na KI270752.1 <> na Primary Assembly 27745 chrUn_KI270752v1 +HSCHRUN_RANDOM_CTG30 unplaced-scaffold na na KI270753.1 = NT_187508.1 Primary Assembly 62944 chrUn_KI270753v1 +HSCHRUN_RANDOM_CTG33 unplaced-scaffold na na KI270754.1 = NT_187509.1 Primary Assembly 40191 chrUn_KI270754v1 +HSCHRUN_RANDOM_CTG34 unplaced-scaffold na na KI270755.1 = NT_187510.1 Primary Assembly 36723 chrUn_KI270755v1 +HSCHRUN_RANDOM_CTG35 unplaced-scaffold na na KI270756.1 = NT_187511.1 Primary Assembly 79590 chrUn_KI270756v1 +HSCHRUN_RANDOM_CTG36 unplaced-scaffold na na KI270757.1 = NT_187512.1 Primary Assembly 71251 chrUn_KI270757v1 +HG986_PATCH fix-patch 1 Chromosome KN196472.1 = NW_009646194.1 PATCHES 186494 chr1_KN196472v1_fix +HG2058_PATCH fix-patch 1 Chromosome KN196473.1 = NW_009646195.1 PATCHES 166200 chr1_KN196473v1_fix +HG2104_PATCH fix-patch 1 Chromosome KN196474.1 = NW_009646196.1 PATCHES 122022 chr1_KN196474v1_fix +HG1832_PATCH fix-patch 1 Chromosome KN538360.1 = NW_011332687.1 PATCHES 460100 chr1_KN538360v1_fix +HG2095_PATCH fix-patch 1 Chromosome KN538361.1 = NW_011332688.1 PATCHES 305542 chr1_KN538361v1_fix +HG1342_HG2282_PATCH fix-patch 1 Chromosome KQ031383.1 = NW_012132914.1 PATCHES 467143 chr1_KQ031383v1_fix +HG2002_PATCH fix-patch 1 Chromosome KZ208906.1 = NW_018654708.1 PATCHES 330031 chr1_KZ208906v1_fix +HG460_PATCH fix-patch 1 Chromosome KZ559100.1 = NW_019805487.1 PATCHES 44955 chr1_KZ559100v1_fix +HG1343_HG173_HG459_PATCH fix-patch 1 Chromosome MU273333.1 = NW_025791756.1 PATCHES 1572686 chr1_MU273333v1_fix +HG2571_PATCH fix-patch 1 Chromosome MU273334.1 = NW_025791757.1 PATCHES 210426 chr1_MU273334v1_fix +HG2515_PATCH fix-patch 1 Chromosome MU273335.1 = NW_025791758.1 PATCHES 211934 chr1_MU273335v1_fix +HG2577_PATCH fix-patch 1 Chromosome MU273336.1 = NW_025791759.1 PATCHES 250447 chr1_MU273336v1_fix +HSCHR1_3_CTG3 novel-patch 1 Chromosome KQ458382.1 = NW_014040925.1 PATCHES 141019 chr1_KQ458382v1_alt +HSCHR1_4_CTG3 novel-patch 1 Chromosome KQ458383.1 = NW_014040926.1 PATCHES 349938 chr1_KQ458383v1_alt +HSCHR1_5_CTG32_1 novel-patch 1 Chromosome KQ458384.1 = NW_014040927.1 PATCHES 212205 chr1_KQ458384v1_alt +HSCHR1_5_CTG3 novel-patch 1 Chromosome KQ983255.1 = NW_015495298.1 PATCHES 278659 chr1_KQ983255v1_alt +HSCHR1_6_CTG3 novel-patch 1 Chromosome KV880763.1 = NW_017852928.1 PATCHES 551020 chr1_KV880763v1_alt +HSCHR1_8_CTG3 novel-patch 1 Chromosome KZ208904.1 = NW_018654706.1 PATCHES 166136 chr1_KZ208904v1_alt +HSCHR1_9_CTG3 novel-patch 1 Chromosome KZ208905.1 = NW_018654707.1 PATCHES 140355 chr1_KZ208905v1_alt +HSCHR1_12_CTG3 novel-patch 1 Chromosome MU273330.1 = NW_025791753.1 PATCHES 516764 chr1_MU273330v1_alt +HSCHR1_5_CTG31 novel-patch 1 Chromosome MU273331.1 = NW_025791754.1 PATCHES 847441 chr1_MU273331v1_alt +HSCHR1_6_CTG31 novel-patch 1 Chromosome MU273332.1 = NW_025791755.1 PATCHES 335159 chr1_MU273332v1_alt +HG2233_PATCH fix-patch 2 Chromosome KN538362.1 = NW_011332689.1 PATCHES 208149 chr2_KN538362v1_fix +HG2232_PATCH fix-patch 2 Chromosome KN538363.1 = NW_011332690.1 PATCHES 365499 chr2_KN538363v1_fix +HG2290_PATCH fix-patch 2 Chromosome KQ031384.1 = NW_012132915.1 PATCHES 481245 chr2_KQ031384v1_fix +HG721_PATCH fix-patch 2 Chromosome ML143341.1 = NW_021159987.1 PATCHES 145975 chr2_ML143341v1_fix +HG1384_PATCH fix-patch 2 Chromosome ML143342.1 = NW_021159988.1 PATCHES 84043 chr2_ML143342v1_fix +HG2494_PATCH fix-patch 2 Chromosome MU273341.1 = NW_025791764.1 PATCHES 120381 chr2_MU273341v1_fix +HG2275_PATCH fix-patch 2 Chromosome MU273342.1 = NW_025791765.1 PATCHES 955087 chr2_MU273342v1_fix +HG2052_PATCH fix-patch 2 Chromosome MU273343.1 = NW_025791766.1 PATCHES 489404 chr2_MU273343v1_fix +HG2231_HG2496_PATCH fix-patch 2 Chromosome MU273344.1 = NW_025791767.1 PATCHES 244725 chr2_MU273344v1_fix +HG2140_PATCH fix-patch 2 Chromosome MU273345.1 = NW_025791768.1 PATCHES 174385 chr2_MU273345v1_fix +HSCHR2_6_CTG7_2 novel-patch 2 Chromosome KQ983256.1 = NW_015495299.1 PATCHES 535088 chr2_KQ983256v1_alt +HSCHR2_7_CTG7_2 novel-patch 2 Chromosome KZ208907.1 = NW_018654709.1 PATCHES 181658 chr2_KZ208907v1_alt +HSCHR2_8_CTG7_2 novel-patch 2 Chromosome KZ208908.1 = NW_018654710.1 PATCHES 140361 chr2_KZ208908v1_alt +HSCHR2_10_CTG7_2 novel-patch 2 Chromosome MU273337.1 = NW_025791760.1 PATCHES 431782 chr2_MU273337v1_alt +HSCHR2_11_CTG7_2 novel-patch 2 Chromosome MU273338.1 = NW_025791761.1 PATCHES 535251 chr2_MU273338v1_alt +HSCHR2_12_CTG7_2 novel-patch 2 Chromosome MU273339.1 = NW_025791762.1 PATCHES 500581 chr2_MU273339v1_alt +HSCHR2_6_CTG1 novel-patch 2 Chromosome MU273340.1 = NW_025791763.1 PATCHES 284971 chr2_MU273340v1_alt +HG2066_PATCH fix-patch 3 Chromosome KN196475.1 = NW_009646197.1 PATCHES 451168 chr3_KN196475v1_fix +HG2022_PATCH fix-patch 3 Chromosome KN196476.1 = NW_009646198.1 PATCHES 305979 chr3_KN196476v1_fix +HG126_PATCH fix-patch 3 Chromosome KN538364.1 = NW_011332691.1 PATCHES 415308 chr3_KN538364v1_fix +HG2235_PATCH fix-patch 3 Chromosome KQ031385.1 = NW_012132916.1 PATCHES 373699 chr3_KQ031385v1_fix +HG2237_PATCH fix-patch 3 Chromosome KQ031386.1 = NW_012132917.1 PATCHES 165718 chr3_KQ031386v1_fix +HG2236_PATCH fix-patch 3 Chromosome KV766192.1 = NW_017363813.1 PATCHES 411654 chr3_KV766192v1_fix +HG2133_PATCH fix-patch 3 Chromosome KZ559104.1 = NW_019805491.1 PATCHES 105527 chr3_KZ559104v1_fix +HG2264_PATCH fix-patch 3 Chromosome MU273346.1 = NW_025791769.1 PATCHES 469342 chr3_MU273346v1_fix +HG2077_PATCH fix-patch 3 Chromosome MU273347.1 = NW_025791770.1 PATCHES 301310 chr3_MU273347v1_fix +HG2069_PATCH fix-patch 3 Chromosome MU273348.1 = NW_025791771.1 PATCHES 475876 chr3_MU273348v1_fix +HSCHR3_4_CTG1 novel-patch 3 Chromosome KZ208909.1 = NW_018654711.1 PATCHES 175849 chr3_KZ208909v1_alt +HSCHR3_7_CTG2_1 novel-patch 3 Chromosome KZ559101.1 = NW_019805488.1 PATCHES 164041 chr3_KZ559101v1_alt +HSCHR3_8_CTG2_1 novel-patch 3 Chromosome KZ559102.1 = NW_019805489.1 PATCHES 197752 chr3_KZ559102v1_alt +HSCHR3_9_CTG2_1 novel-patch 3 Chromosome KZ559103.1 = NW_019805490.1 PATCHES 302885 chr3_KZ559103v1_alt +HSCHR3_6_CTG2_1 novel-patch 3 Chromosome KZ559105.1 = NW_019805492.1 PATCHES 195063 chr3_KZ559105v1_alt +HSCHR3_5_CTG1 novel-patch 3 Chromosome ML143343.1 = NW_021159989.1 PATCHES 215443 chr3_ML143343v1_alt +HG2023_PATCH fix-patch 4 Chromosome KQ983257.1 = NW_015495300.1 PATCHES 230434 chr4_KQ983257v1_fix +HG699_PATCH fix-patch 4 Chromosome ML143344.1 = NW_021159990.1 PATCHES 235734 chr4_ML143344v1_fix +HG2525_PATCH fix-patch 4 Chromosome ML143345.1 = NW_021159991.1 PATCHES 341066 chr4_ML143345v1_fix +HG1299_PATCH fix-patch 4 Chromosome ML143346.1 = NW_021159992.1 PATCHES 53476 chr4_ML143346v1_fix +HG1298_PATCH fix-patch 4 Chromosome ML143347.1 = NW_021159993.1 PATCHES 176674 chr4_ML143347v1_fix +HG1296_PATCH fix-patch 4 Chromosome ML143348.1 = NW_021159994.1 PATCHES 125549 chr4_ML143348v1_fix +HG705_PATCH fix-patch 4 Chromosome ML143349.1 = NW_021159995.1 PATCHES 276109 chr4_ML143349v1_fix +HG2155_PATCH fix-patch 4 Chromosome MU273350.1 = NW_025791773.1 PATCHES 113364 chr4_MU273350v1_fix +HG287_PATCH fix-patch 4 Chromosome MU273351.1 = NW_025791774.1 PATCHES 205691 chr4_MU273351v1_fix +HSCHR4_2_CTG4 novel-patch 4 Chromosome KQ090013.1 = NW_013171799.1 PATCHES 90922 chr4_KQ090013v1_alt +HSCHR4_8_CTG12 novel-patch 4 Chromosome KQ090014.1 = NW_013171800.1 PATCHES 163749 chr4_KQ090014v1_alt +HSCHR4_9_CTG12 novel-patch 4 Chromosome KQ090015.1 = NW_013171801.1 PATCHES 236512 chr4_KQ090015v1_alt +HSCHR4_11_CTG12 novel-patch 4 Chromosome KQ983258.1 = NW_015495301.1 PATCHES 205407 chr4_KQ983258v1_alt +HSCHR4_12_CTG12 novel-patch 4 Chromosome KV766193.1 = NW_017363814.1 PATCHES 420675 chr4_KV766193v1_alt +HSCHR4_2_CTG8_1 novel-patch 4 Chromosome MU273349.1 = NW_025791772.1 PATCHES 308682 chr4_MU273349v1_alt +HG30_PATCH fix-patch 5 Chromosome KV575244.1 = NW_016107298.1 PATCHES 673059 chr5_KV575244v1_fix +HG1395_PATCH fix-patch 5 Chromosome ML143350.1 = NW_021159996.1 PATCHES 89956 chr5_ML143350v1_fix +HG1046_PATCH fix-patch 5 Chromosome MU273352.1 = NW_025791775.1 PATCHES 34400 chr5_MU273352v1_fix +HG2476_PATCH fix-patch 5 Chromosome MU273353.1 = NW_025791776.1 PATCHES 208405 chr5_MU273353v1_fix +HG2405_PATCH fix-patch 5 Chromosome MU273354.1 = NW_025791777.1 PATCHES 2101585 chr5_MU273354v1_fix +HG2308_PATCH fix-patch 5 Chromosome MU273355.1 = NW_025791778.1 PATCHES 508332 chr5_MU273355v1_fix +HSCHR5_7_CTG1 novel-patch 5 Chromosome KN196477.1 = NW_009646199.1 PATCHES 139087 chr5_KN196477v1_alt +HSCHR5_8_CTG1 novel-patch 5 Chromosome KV575243.1 = NW_016107297.1 PATCHES 362221 chr5_KV575243v1_alt +HSCHR5_9_CTG1 novel-patch 5 Chromosome KZ208910.1 = NW_018654712.1 PATCHES 135987 chr5_KZ208910v1_alt +HSCHR5_10_CTG1 novel-patch 5 Chromosome MU273356.1 = NW_025791779.1 PATCHES 302485 chr5_MU273356v1_alt +HG2128_PATCH fix-patch 6 Chromosome KN196478.1 = NW_009646200.1 PATCHES 268330 chr6_KN196478v1_fix +HG1651_PATCH fix-patch 6 Chromosome KQ031387.1 = NW_012132918.1 PATCHES 320750 chr6_KQ031387v1_fix +HG2072_PATCH fix-patch 6 Chromosome KQ090016.1 = NW_013171802.1 PATCHES 245716 chr6_KQ090016v1_fix +HG2121_PATCH fix-patch 6 Chromosome KV766194.1 = NW_017363815.1 PATCHES 139427 chr6_KV766194v1_fix +HG2057_PATCH fix-patch 6 Chromosome KZ208911.1 = NW_018654713.1 PATCHES 242796 chr6_KZ208911v1_fix +HG563_PATCH fix-patch 6 Chromosome ML143351.1 = NW_021159997.1 PATCHES 73265 chr6_ML143351v1_fix +HSCHR6_1_CTG10 novel-patch 6 Chromosome KQ090017.1 = NW_013171803.1 PATCHES 82315 chr6_KQ090017v1_alt +HSCHR6_1_CTG1 novel-patch 6 Chromosome MU273357.1 = NW_025791780.1 PATCHES 383128 chr6_MU273357v1_alt +HG2239_PATCH fix-patch 7 Chromosome KQ031388.1 = NW_012132919.1 PATCHES 179932 chr7_KQ031388v1_fix +HG2088_PATCH fix-patch 7 Chromosome KV880764.1 = NW_017852929.1 PATCHES 142129 chr7_KV880764v1_fix +HG2266_PATCH fix-patch 7 Chromosome KV880765.1 = NW_017852930.1 PATCHES 468267 chr7_KV880765v1_fix +HG708_PATCH fix-patch 7 Chromosome KZ208912.1 = NW_018654714.1 PATCHES 589656 chr7_KZ208912v1_fix +HG1309_PATCH fix-patch 7 Chromosome ML143352.1 = NW_021159998.1 PATCHES 254759 chr7_ML143352v1_fix +HSCHR7_3_CTG4_4 novel-patch 7 Chromosome KZ208913.1 = NW_018654715.1 PATCHES 680662 chr7_KZ208913v1_alt +HSCHR7_3_CTG1 novel-patch 7 Chromosome KZ559106.1 = NW_019805493.1 PATCHES 172555 chr7_KZ559106v1_alt +HSCHR7_4_CTG1 novel-patch 7 Chromosome MU273358.1 = NW_025791781.1 PATCHES 464417 chr7_MU273358v1_alt +HG2067_PATCH fix-patch 8 Chromosome KV880766.1 = NW_017852931.1 PATCHES 156998 chr8_KV880766v1_fix +HG2068_PATCH fix-patch 8 Chromosome KV880767.1 = NW_017852932.1 PATCHES 265876 chr8_KV880767v1_fix +HG2419_PATCH fix-patch 8 Chromosome KZ208914.1 = NW_018654716.1 PATCHES 165120 chr8_KZ208914v1_fix +HG76_PATCH fix-patch 8 Chromosome KZ208915.1 = NW_018654717.1 PATCHES 6367528 chr8_KZ208915v1_fix +HG2176_PATCH fix-patch 8 Chromosome MU273359.1 = NW_025791782.1 PATCHES 150302 chr8_MU273359v1_fix +HG1047_PATCH fix-patch 8 Chromosome MU273360.1 = NW_025791783.1 PATCHES 39290 chr8_MU273360v1_fix +HG2408_PATCH fix-patch 8 Chromosome MU273361.1 = NW_025791784.1 PATCHES 106905 chr8_MU273361v1_fix +HG2267_PATCH fix-patch 8 Chromosome MU273362.1 = NW_025791785.1 PATCHES 429744 chr8_MU273362v1_fix +HG2031_PATCH fix-patch 8 Chromosome MU273363.1 = NW_025791786.1 PATCHES 207371 chr8_MU273363v1_fix +HSCHR8_7_CTG7 novel-patch 8 Chromosome KZ559107.1 = NW_019805494.1 PATCHES 103072 chr8_KZ559107v1_alt +HG2030_PATCH fix-patch 9 Chromosome KN196479.1 = NW_009646201.1 PATCHES 330164 chr9_KN196479v1_fix +HG613_PATCH fix-patch 9 Chromosome ML143353.1 = NW_021159999.1 PATCHES 25408 chr9_ML143353v1_fix +HG2158_PATCH fix-patch 9 Chromosome MU273364.1 = NW_025791787.1 PATCHES 340717 chr9_MU273364v1_fix +HG1012_PATCH fix-patch 9 Chromosome MU273365.1 = NW_025791788.1 PATCHES 482250 chr9_MU273365v1_fix +HG1206_PATCH fix-patch 9 Chromosome MU273366.1 = NW_025791789.1 PATCHES 569668 chr9_MU273366v1_fix +HSCHR9_1_CTG6 novel-patch 9 Chromosome KQ090018.1 = NW_013171804.1 PATCHES 163882 chr9_KQ090018v1_alt +HSCHR9_1_CTG7 novel-patch 9 Chromosome KQ090019.1 = NW_013171805.1 PATCHES 134099 chr9_KQ090019v1_alt +HG2191_PATCH fix-patch 10 Chromosome KN196480.1 = NW_009646202.1 PATCHES 277797 chr10_KN196480v1_fix +HG2241_PATCH fix-patch 10 Chromosome KN538365.1 = NW_011332692.1 PATCHES 14347 chr10_KN538365v1_fix +HG2242_HG2243_PATCH fix-patch 10 Chromosome KN538366.1 = NW_011332693.1 PATCHES 85284 chr10_KN538366v1_fix +HG2244_HG2245_PATCH fix-patch 10 Chromosome KN538367.1 = NW_011332694.1 PATCHES 420164 chr10_KN538367v1_fix +HG2334_PATCH fix-patch 10 Chromosome KQ090021.1 = NW_013171807.1 PATCHES 264545 chr10_KQ090021v1_fix +HG545_PATCH fix-patch 10 Chromosome ML143354.1 = NW_021160000.1 PATCHES 454963 chr10_ML143354v1_fix +HG1277_PATCH fix-patch 10 Chromosome ML143355.1 = NW_021160001.1 PATCHES 292944 chr10_ML143355v1_fix +HG2576_PATCH fix-patch 10 Chromosome MU273367.1 = NW_025791790.1 PATCHES 196262 chr10_MU273367v1_fix +HSCHR10_1_CTG6 novel-patch 10 Chromosome KQ090020.1 = NW_013171806.1 PATCHES 185507 chr10_KQ090020v1_alt +HG2217_PATCH fix-patch 11 Chromosome KN196481.1 = NW_009646203.1 PATCHES 108875 chr11_KN196481v1_fix +HG2116_PATCH fix-patch 11 Chromosome KQ090022.1 = NW_013171808.1 PATCHES 181958 chr11_KQ090022v1_fix +HG107_HG2565_PATCH fix-patch 11 Chromosome KQ759759.2 = NW_015148966.2 PATCHES 204999 chr11_KQ759759v2_fix +HG1708_PATCH fix-patch 11 Chromosome KV766195.1 = NW_017363816.1 PATCHES 140877 chr11_KV766195v1_fix +HG2060_PATCH fix-patch 11 Chromosome KZ559108.1 = NW_019805495.1 PATCHES 305244 chr11_KZ559108v1_fix +HG2114_PATCH fix-patch 11 Chromosome KZ559109.1 = NW_019805496.1 PATCHES 279644 chr11_KZ559109v1_fix +HG1521_PATCH fix-patch 11 Chromosome ML143356.1 = NW_021160002.1 PATCHES 45257 chr11_ML143356v1_fix +HG1445_PATCH fix-patch 11 Chromosome ML143357.1 = NW_021160003.1 PATCHES 165419 chr11_ML143357v1_fix +HG28_PATCH fix-patch 11 Chromosome ML143358.1 = NW_021160004.1 PATCHES 270122 chr11_ML143358v1_fix +HG2115_PATCH fix-patch 11 Chromosome ML143359.1 = NW_021160005.1 PATCHES 217075 chr11_ML143359v1_fix +HG2111_PATCH fix-patch 11 Chromosome ML143360.1 = NW_021160006.1 PATCHES 170928 chr11_ML143360v1_fix +HG152_PATCH fix-patch 11 Chromosome MU273369.1 = NW_025791792.1 PATCHES 434831 chr11_MU273369v1_fix +HG2568_PATCH fix-patch 11 Chromosome MU273370.1 = NW_025791793.1 PATCHES 344606 chr11_MU273370v1_fix +HG2578_PATCH fix-patch 11 Chromosome MU273371.1 = NW_025791794.1 PATCHES 122722 chr11_MU273371v1_fix +HSCHR11_1_CTG1_2 novel-patch 11 Chromosome KN538368.1 = NW_011332695.1 PATCHES 203552 chr11_KN538368v1_alt +HSCHR11_2_CTG8 novel-patch 11 Chromosome KZ559110.1 = NW_019805497.1 PATCHES 301637 chr11_KZ559110v1_alt +HSCHR11_1_CTG3_1 novel-patch 11 Chromosome KZ559111.1 = NW_019805498.1 PATCHES 181167 chr11_KZ559111v1_alt +HSCHR11_2_CTG3_1 novel-patch 11 Chromosome MU273368.1 = NW_025791791.1 PATCHES 261194 chr11_MU273368v1_alt +HG23_PATCH fix-patch 12 Chromosome KN196482.1 = NW_009646204.1 PATCHES 211377 chr12_KN196482v1_fix +HG1362_PATCH fix-patch 12 Chromosome KN538369.1 = NW_011332696.1 PATCHES 541038 chr12_KN538369v1_fix +HG2247_PATCH fix-patch 12 Chromosome KN538370.1 = NW_011332697.1 PATCHES 86533 chr12_KN538370v1_fix +HG2063_PATCH fix-patch 12 Chromosome KQ759760.1 = NW_015148967.1 PATCHES 315610 chr12_KQ759760v1_fix +HG1815_PATCH fix-patch 12 Chromosome KZ208916.1 = NW_018654718.1 PATCHES 1046838 chr12_KZ208916v1_fix +HG2047_PATCH fix-patch 12 Chromosome KZ208917.1 = NW_018654719.1 PATCHES 64689 chr12_KZ208917v1_fix +HG2246_HG2248_HG2276_PATCH fix-patch 12 Chromosome ML143361.1 = NW_021160007.1 PATCHES 297568 chr12_ML143361v1_fix +HG1398_PATCH fix-patch 12 Chromosome ML143362.1 = NW_021160008.1 PATCHES 192531 chr12_ML143362v1_fix +HG2554_PATCH fix-patch 12 Chromosome MU273372.1 = NW_025791795.1 PATCHES 104537 chr12_MU273372v1_fix +HSCHR12_2_CTG1 novel-patch 12 Chromosome KQ090023.1 = NW_013171809.1 PATCHES 109323 chr12_KQ090023v1_alt +HSCHR12_8_CTG2_1 novel-patch 12 Chromosome KZ208918.1 = NW_018654720.1 PATCHES 174808 chr12_KZ208918v1_alt +HSCHR12_9_CTG2_1 novel-patch 12 Chromosome KZ559112.1 = NW_019805499.1 PATCHES 154139 chr12_KZ559112v1_alt +HG2216_PATCH fix-patch 13 Chromosome KN196483.1 = NW_009646205.1 PATCHES 35455 chr13_KN196483v1_fix +HG2288_HG2289_PATCH fix-patch 13 Chromosome KN538371.1 = NW_011332698.1 PATCHES 206320 chr13_KN538371v1_fix +HG2291_PATCH fix-patch 13 Chromosome KN538372.1 = NW_011332699.1 PATCHES 356766 chr13_KN538372v1_fix +HG2249_PATCH fix-patch 13 Chromosome KN538373.1 = NW_011332700.1 PATCHES 148762 chr13_KN538373v1_fix +HG1817_1_PATCH fix-patch 13 Chromosome ML143363.1 = NW_021160009.1 PATCHES 7309 chr13_ML143363v1_fix +HG1523_PATCH fix-patch 13 Chromosome ML143364.1 = NW_021160010.1 PATCHES 158944 chr13_ML143364v1_fix +HG1524_PATCH fix-patch 13 Chromosome ML143365.1 = NW_021160011.1 PATCHES 65394 chr13_ML143365v1_fix +HG2509_PATCH fix-patch 13 Chromosome ML143366.1 = NW_021160012.1 PATCHES 409912 chr13_ML143366v1_fix +HSCHR13_1_CTG7 novel-patch 13 Chromosome KQ090024.1 = NW_013171810.1 PATCHES 168146 chr13_KQ090024v1_alt +HSCHR13_1_CTG8 novel-patch 13 Chromosome KQ090025.1 = NW_013171811.1 PATCHES 123480 chr13_KQ090025v1_alt +HG1_PATCH fix-patch 14 Chromosome KZ208920.1 = NW_018654722.1 PATCHES 690932 chr14_KZ208920v1_fix +HG2510_PATCH fix-patch 14 Chromosome ML143367.1 = NW_021160013.1 PATCHES 399183 chr14_ML143367v1_fix +HG2526_HG2573_PATCH fix-patch 14 Chromosome MU273373.1 = NW_025791796.1 PATCHES 722645 chr14_MU273373v1_fix +HSCHR14_8_CTG1 novel-patch 14 Chromosome KZ208919.1 = NW_018654721.1 PATCHES 171798 chr14_KZ208919v1_alt +HSCHR14_9_CTG1 novel-patch 14 Chromosome ML143368.1 = NW_021160014.1 PATCHES 264228 chr14_ML143368v1_alt +HG2139_PATCH fix-patch 15 Chromosome KN538374.1 = NW_011332701.1 PATCHES 4998962 chr15_KN538374v1_fix +HG2499_PATCH fix-patch 15 Chromosome ML143369.1 = NW_021160015.1 PATCHES 97763 chr15_ML143369v1_fix +HG2198_PATCH fix-patch 15 Chromosome ML143370.1 = NW_021160016.1 PATCHES 369264 chr15_ML143370v1_fix +HG2365_PATCH fix-patch 15 Chromosome ML143371.1 = NW_021160017.1 PATCHES 5500449 chr15_ML143371v1_fix +HG2511_PATCH fix-patch 15 Chromosome ML143372.1 = NW_021160018.1 PATCHES 396515 chr15_ML143372v1_fix +HG2280_PATCH fix-patch 15 Chromosome MU273374.1 = NW_025791797.1 PATCHES 1154574 chr15_MU273374v1_fix +HSCHR15_6_CTG8 novel-patch 15 Chromosome KQ031389.1 = NW_012132920.1 PATCHES 2365364 chr15_KQ031389v1_alt +HSCHR15_9_CTG8 novel-patch 15 Chromosome MU273375.1 = NW_025791798.1 PATCHES 204007 chr15_MU273375v1_alt +HG926_PATCH fix-patch 16 Chromosome KV880768.1 = NW_017852933.1 PATCHES 1927115 chr16_KV880768v1_fix +HG2263_PATCH fix-patch 16 Chromosome KZ559113.1 = NW_019805500.1 PATCHES 480415 chr16_KZ559113v1_fix +HG2471_PATCH fix-patch 16 Chromosome ML143373.1 = NW_021160019.1 PATCHES 270967 chr16_ML143373v1_fix +HG401_PATCH fix-patch 16 Chromosome MU273376.1 = NW_025791799.1 PATCHES 87715 chr16_MU273376v1_fix +HG405_PATCH fix-patch 16 Chromosome MU273377.1 = NW_025791800.1 PATCHES 334997 chr16_MU273377v1_fix +HSCHR16_3_CTG3_1 novel-patch 16 Chromosome KQ031390.1 = NW_012132921.1 PATCHES 169136 chr16_KQ031390v1_alt +HSCHR16_5_CTG1 novel-patch 16 Chromosome KQ090026.1 = NW_013171812.1 PATCHES 59016 chr16_KQ090026v1_alt +HSCHR16_4_CTG3_1 novel-patch 16 Chromosome KQ090027.1 = NW_013171813.1 PATCHES 267463 chr16_KQ090027v1_alt +HSCHR16_5_CTG3_1 novel-patch 16 Chromosome KZ208921.1 = NW_018654723.1 PATCHES 78609 chr16_KZ208921v1_alt +HG2046_PATCH fix-patch 17 Chromosome KV575245.1 = NW_016107299.1 PATCHES 154723 chr17_KV575245v1_fix +HG2285_HG106_HG2252_PATCH fix-patch 17 Chromosome KV766196.1 = NW_017363817.1 PATCHES 281919 chr17_KV766196v1_fix +HG2087_PATCH fix-patch 17 Chromosome ML143374.1 = NW_021160020.1 PATCHES 137908 chr17_ML143374v1_fix +HG1320_PATCH fix-patch 17 Chromosome ML143375.1 = NW_021160021.1 PATCHES 56695 chr17_ML143375v1_fix +HG2118_PATCH fix-patch 17 Chromosome MU273379.1 = NW_025791802.1 PATCHES 234878 chr17_MU273379v1_fix +HG2407_PATCH fix-patch 17 Chromosome MU273380.1 = NW_025791803.1 PATCHES 538541 chr17_MU273380v1_fix +HG2251_PATCH fix-patch 17 Chromosome MU273381.1 = NW_025791804.1 PATCHES 144689 chr17_MU273381v1_fix +HG1369_PATCH fix-patch 17 Chromosome MU273382.1 = NW_025791805.1 PATCHES 187626 chr17_MU273382v1_fix +HG2580_PATCH fix-patch 17 Chromosome MU273383.1 = NW_025791806.1 PATCHES 172609 chr17_MU273383v1_fix +HSCHR17_11_CTG4 novel-patch 17 Chromosome KV766197.1 = NW_017363818.1 PATCHES 246895 chr17_KV766197v1_alt +HSCHR17_3_CTG1 novel-patch 17 Chromosome KV766198.1 = NW_017363819.1 PATCHES 276292 chr17_KV766198v1_alt +HSCHR17_12_CTG4 novel-patch 17 Chromosome KZ559114.1 = NW_019805501.1 PATCHES 116753 chr17_KZ559114v1_alt +HSCHR17_13_CTG4 novel-patch 17 Chromosome MU273378.1 = NW_025791801.1 PATCHES 372839 chr17_MU273378v1_alt +HG2213_PATCH fix-patch 18 Chromosome KQ090028.1 = NW_013171814.1 PATCHES 407387 chr18_KQ090028v1_fix +HG2442_PATCH fix-patch 18 Chromosome KZ208922.1 = NW_018654724.1 PATCHES 93070 chr18_KZ208922v1_fix +HG2412_PATCH fix-patch 18 Chromosome KZ559115.1 = NW_019805502.1 PATCHES 230843 chr18_KZ559115v1_fix +HSCHR18_5_CTG1_1 novel-patch 18 Chromosome KQ458385.1 = NW_014040928.1 PATCHES 205101 chr18_KQ458385v1_alt +HSCHR18_1_CTG1 novel-patch 18 Chromosome KZ559116.1 = NW_019805503.1 PATCHES 163186 chr18_KZ559116v1_alt +HG2021_PATCH fix-patch 19 Chromosome KN196484.1 = NW_009646206.1 PATCHES 370917 chr19_KN196484v1_fix +HG26_PATCH fix-patch 19 Chromosome KQ458386.1 = NW_014040929.1 PATCHES 405389 chr19_KQ458386v1_fix +HG109_PATCH fix-patch 19 Chromosome ML143376.1 = NW_021160022.1 PATCHES 493165 chr19_ML143376v1_fix +HG2461_PATCH fix-patch 19 Chromosome MU273384.1 = NW_025791807.1 PATCHES 333754 chr19_MU273384v1_fix +HG2569_PATCH fix-patch 19 Chromosome MU273385.1 = NW_025791808.1 PATCHES 137818 chr19_MU273385v1_fix +HG2469_PATCH fix-patch 19 Chromosome MU273386.1 = NW_025791809.1 PATCHES 226166 chr19_MU273386v1_fix +HSCHR19KIR_0019-4656-A_CTG3_1 novel-patch 19 Chromosome KV575246.1 = NW_016107300.1 PATCHES 163926 chr19_KV575246v1_alt +HSCHR19KIR_CA01-TA01_1_CTG3_1 novel-patch 19 Chromosome KV575247.1 = NW_016107301.1 PATCHES 170206 chr19_KV575247v1_alt +HSCHR19KIR_CA01-TA01_2_CTG3_1 novel-patch 19 Chromosome KV575248.1 = NW_016107302.1 PATCHES 168131 chr19_KV575248v1_alt +HSCHR19KIR_CA01-TB04_CTG3_1 novel-patch 19 Chromosome KV575249.1 = NW_016107303.1 PATCHES 293522 chr19_KV575249v1_alt +HSCHR19KIR_CA01-TB01_CTG3_1 novel-patch 19 Chromosome KV575250.1 = NW_016107304.1 PATCHES 241058 chr19_KV575250v1_alt +HSCHR19KIR_HG2394_CTG3_1 novel-patch 19 Chromosome KV575251.1 = NW_016107305.1 PATCHES 159285 chr19_KV575251v1_alt +HSCHR19KIR_502960008-2_CTG3_1 novel-patch 19 Chromosome KV575252.1 = NW_016107306.1 PATCHES 178197 chr19_KV575252v1_alt +HSCHR19KIR_502960008-1_CTG3_1 novel-patch 19 Chromosome KV575253.1 = NW_016107307.1 PATCHES 166713 chr19_KV575253v1_alt +HSCHR19KIR_0010-5217-AB_CTG3_1 novel-patch 19 Chromosome KV575254.1 = NW_016107308.1 PATCHES 99845 chr19_KV575254v1_alt +HSCHR19KIR_7191059-1_CTG3_1 novel-patch 19 Chromosome KV575255.1 = NW_016107309.1 PATCHES 161095 chr19_KV575255v1_alt +HSCHR19KIR_0019-4656-B_CTG3_1 novel-patch 19 Chromosome KV575256.1 = NW_016107310.1 PATCHES 223118 chr19_KV575256v1_alt +HSCHR19KIR_CA04_CTG3_1 novel-patch 19 Chromosome KV575257.1 = NW_016107311.1 PATCHES 100553 chr19_KV575257v1_alt +HSCHR19KIR_HG2393_CTG3_1 novel-patch 19 Chromosome KV575258.1 = NW_016107312.1 PATCHES 156965 chr19_KV575258v1_alt +HSCHR19KIR_7191059-2_CTG3_1 novel-patch 19 Chromosome KV575259.1 = NW_016107313.1 PATCHES 171263 chr19_KV575259v1_alt +HSCHR19KIR_HG2396_CTG3_1 novel-patch 19 Chromosome KV575260.1 = NW_016107314.1 PATCHES 145691 chr19_KV575260v1_alt +HSCHR19_6_CTG2 novel-patch 19 Chromosome MU273387.1 = NW_025791810.1 PATCHES 89211 chr19_MU273387v1_alt +HG2225_PATCH fix-patch 20 Chromosome MU273388.1 = NW_025791811.1 PATCHES 273725 chr20_MU273388v1_fix +HG410_PATCH fix-patch 20 Chromosome MU273389.1 = NW_025791812.1 PATCHES 355731 chr20_MU273389v1_fix +HG2513_PATCH fix-patch 21 Chromosome ML143377.1 = NW_021160023.1 PATCHES 519485 chr21_ML143377v1_fix +HG2219_PATCH fix-patch 21 Chromosome MU273390.1 = NW_025791813.1 PATCHES 336752 chr21_MU273390v1_fix +HG2265_PATCH fix-patch 21 Chromosome MU273391.1 = NW_025791814.1 PATCHES 1020778 chr21_MU273391v1_fix +HG2521_PATCH fix-patch 21 Chromosome MU273392.1 = NW_025791815.1 PATCHES 189707 chr21_MU273392v1_fix +HG1311_HG2539_PATCH fix-patch 22 Chromosome KQ759762.2 = NW_015148969.2 PATCHES 101040 chr22_KQ759762v2_fix +HG1485_PATCH fix-patch 22 Chromosome ML143378.1 = NW_021160024.1 PATCHES 461303 chr22_ML143378v1_fix +HG494_PATCH fix-patch 22 Chromosome ML143379.1 = NW_021160025.1 PATCHES 12295 chr22_ML143379v1_fix +HG2512_PATCH fix-patch 22 Chromosome ML143380.1 = NW_021160026.1 PATCHES 412368 chr22_ML143380v1_fix +HSCHR22_4_CTG1 novel-patch 22 Chromosome KN196485.1 = NW_009646207.1 PATCHES 156562 chr22_KN196485v1_alt +HSCHR22_5_CTG1 novel-patch 22 Chromosome KN196486.1 = NW_009646208.1 PATCHES 153027 chr22_KN196486v1_alt +HSCHR22_6_CTG1 novel-patch 22 Chromosome KQ458387.1 = NW_014040930.1 PATCHES 155930 chr22_KQ458387v1_alt +HSCHR22_7_CTG1 novel-patch 22 Chromosome KQ458388.1 = NW_014040931.1 PATCHES 174749 chr22_KQ458388v1_alt +HSCHR22_8_CTG1 novel-patch 22 Chromosome KQ759761.1 = NW_015148968.1 PATCHES 145162 chr22_KQ759761v1_alt +HG439_PATCH fix-patch X Chromosome ML143381.1 = NW_021160027.1 PATCHES 403128 chrX_ML143381v1_fix +HG1506_PATCH fix-patch X Chromosome ML143382.1 = NW_021160028.1 PATCHES 28824 chrX_ML143382v1_fix +HG1507_PATCH fix-patch X Chromosome ML143383.1 = NW_021160029.1 PATCHES 68192 chrX_ML143383v1_fix +HG1509_PATCH fix-patch X Chromosome ML143384.1 = NW_021160030.1 PATCHES 14678 chrX_ML143384v1_fix +HG1466_PATCH fix-patch X Chromosome ML143385.1 = NW_021160031.1 PATCHES 17435 chrX_ML143385v1_fix +HG2527_PATCH fix-patch X Chromosome MU273393.1 = NW_025791816.1 PATCHES 68810 chrX_MU273393v1_fix +HG2541_PATCH fix-patch X Chromosome MU273394.1 = NW_025791817.1 PATCHES 140567 chrX_MU273394v1_fix +HSCHRX_3_CTG7 novel-patch X Chromosome KV766199.1 = NW_017363820.1 PATCHES 188004 chrX_KV766199v1_alt +HSCHRX_1_CTG14 novel-patch X Chromosome MU273395.1 = NW_025791818.1 PATCHES 619716 chrX_MU273395v1_alt +HSCHRX_2_CTG14 novel-patch X Chromosome MU273396.1 = NW_025791819.1 PATCHES 294119 chrX_MU273396v1_alt +HSCHRX_3_CTG3 novel-patch X Chromosome MU273397.1 = NW_025791820.1 PATCHES 330493 chrX_MU273397v1_alt +HG2062_PATCH fix-patch Y Chromosome KN196487.1 = NW_009646209.1 PATCHES 101150 chrY_KN196487v1_fix +HG1531_PATCH fix-patch Y Chromosome KZ208923.1 = NW_018654725.1 PATCHES 48370 chrY_KZ208923v1_fix +HG1535_PATCH fix-patch Y Chromosome KZ208924.1 = NW_018654726.1 PATCHES 209722 chrY_KZ208924v1_fix +HG1532_PATCH fix-patch Y Chromosome MU273398.1 = NW_025791821.1 PATCHES 865743 chrY_MU273398v1_fix +HSCHR1_1_CTG31 alt-scaffold 1 Chromosome GL383518.1 = NW_003315905.1 ALT_REF_LOCI_1 182439 chr1_GL383518v1_alt +HSCHR1_2_CTG31 alt-scaffold 1 Chromosome GL383519.1 = NW_003315906.1 ALT_REF_LOCI_1 110268 chr1_GL383519v1_alt +HSCHR1_3_CTG31 alt-scaffold 1 Chromosome GL383520.2 = NW_003315907.2 ALT_REF_LOCI_1 366580 chr1_GL383520v2_alt +HSCHR1_1_CTG32_1 alt-scaffold 1 Chromosome KI270759.1 = NT_187516.1 ALT_REF_LOCI_1 425601 chr1_KI270759v1_alt +HSCHR1_1_CTG11 alt-scaffold 1 Chromosome KI270760.1 = NT_187514.1 ALT_REF_LOCI_1 109528 chr1_KI270760v1_alt +HSCHR1_2_CTG32_1 alt-scaffold 1 Chromosome KI270761.1 = NT_187518.1 ALT_REF_LOCI_1 165834 chr1_KI270761v1_alt +HSCHR1_1_CTG3 alt-scaffold 1 Chromosome KI270762.1 = NT_187515.1 ALT_REF_LOCI_1 354444 chr1_KI270762v1_alt +HSCHR1_3_CTG32_1 alt-scaffold 1 Chromosome KI270763.1 = NT_187519.1 ALT_REF_LOCI_1 911658 chr1_KI270763v1_alt +HSCHR1_4_CTG32_1 alt-scaffold 1 Chromosome KI270764.1 = NT_187521.1 ALT_REF_LOCI_1 50258 chr1_KI270764v1_alt +HSCHR1_4_CTG31 alt-scaffold 1 Chromosome KI270765.1 = NT_187520.1 ALT_REF_LOCI_1 185285 chr1_KI270765v1_alt +HSCHR1_2_CTG3 alt-scaffold 1 Chromosome KI270766.1 = NT_187517.1 ALT_REF_LOCI_1 256271 chr1_KI270766v1_alt +HSCHR2_1_CTG5 alt-scaffold 2 Chromosome GL383521.1 = NW_003315908.1 ALT_REF_LOCI_1 143390 chr2_GL383521v1_alt +HSCHR2_1_CTG7_2 alt-scaffold 2 Chromosome GL383522.1 = NW_003315909.1 ALT_REF_LOCI_1 123821 chr2_GL383522v1_alt +HSCHR2_2_CTG7_2 alt-scaffold 2 Chromosome GL582966.2 = NW_003571033.2 ALT_REF_LOCI_1 96131 chr2_GL582966v2_alt +HSCHR2_1_CTG15 alt-scaffold 2 Chromosome KI270767.1 = NT_187523.1 ALT_REF_LOCI_1 161578 chr2_KI270767v1_alt +HSCHR2_3_CTG7_2 alt-scaffold 2 Chromosome KI270768.1 = NT_187528.1 ALT_REF_LOCI_1 110099 chr2_KI270768v1_alt +HSCHR2_1_CTG1 alt-scaffold 2 Chromosome KI270769.1 = NT_187522.1 ALT_REF_LOCI_1 120616 chr2_KI270769v1_alt +HSCHR2_2_CTG1 alt-scaffold 2 Chromosome KI270770.1 = NT_187525.1 ALT_REF_LOCI_1 136240 chr2_KI270770v1_alt +HSCHR2_4_CTG7_2 alt-scaffold 2 Chromosome KI270771.1 = NT_187530.1 ALT_REF_LOCI_1 110395 chr2_KI270771v1_alt +HSCHR2_1_CTG7 alt-scaffold 2 Chromosome KI270772.1 = NT_187524.1 ALT_REF_LOCI_1 133041 chr2_KI270772v1_alt +HSCHR2_3_CTG1 alt-scaffold 2 Chromosome KI270773.1 = NT_187526.1 ALT_REF_LOCI_1 70887 chr2_KI270773v1_alt +HSCHR2_4_CTG1 alt-scaffold 2 Chromosome KI270774.1 = NT_187529.1 ALT_REF_LOCI_1 223625 chr2_KI270774v1_alt +HSCHR2_5_CTG7_2 alt-scaffold 2 Chromosome KI270775.1 = NT_187531.1 ALT_REF_LOCI_1 138019 chr2_KI270775v1_alt +HSCHR2_3_CTG15 alt-scaffold 2 Chromosome KI270776.1 = NT_187527.1 ALT_REF_LOCI_1 174166 chr2_KI270776v1_alt +HSCHR3_1_CTG2_1 alt-scaffold 3 Chromosome GL383526.1 = NW_003315913.1 ALT_REF_LOCI_1 180671 chr3_GL383526v1_alt +HSCHR3_1_CTG1 alt-scaffold 3 Chromosome JH636055.2 = NW_003871060.2 ALT_REF_LOCI_1 173151 chr3_JH636055v2_alt +HSCHR3_2_CTG2_1 alt-scaffold 3 Chromosome KI270777.1 = NT_187533.1 ALT_REF_LOCI_1 173649 chr3_KI270777v1_alt +HSCHR3_3_CTG2_1 alt-scaffold 3 Chromosome KI270778.1 = NT_187536.1 ALT_REF_LOCI_1 248252 chr3_KI270778v1_alt +HSCHR3_1_CTG3 alt-scaffold 3 Chromosome KI270779.1 = NT_187532.1 ALT_REF_LOCI_1 205312 chr3_KI270779v1_alt +HSCHR3_4_CTG2_1 alt-scaffold 3 Chromosome KI270780.1 = NT_187537.1 ALT_REF_LOCI_1 224108 chr3_KI270780v1_alt +HSCHR3_5_CTG2_1 alt-scaffold 3 Chromosome KI270781.1 = NT_187538.1 ALT_REF_LOCI_1 113034 chr3_KI270781v1_alt +HSCHR3_2_CTG3 alt-scaffold 3 Chromosome KI270782.1 = NT_187534.1 ALT_REF_LOCI_1 162429 chr3_KI270782v1_alt +HSCHR3_3_CTG1 alt-scaffold 3 Chromosome KI270783.1 = NT_187535.1 ALT_REF_LOCI_1 109187 chr3_KI270783v1_alt +HSCHR3_9_CTG3 alt-scaffold 3 Chromosome KI270784.1 = NT_187539.1 ALT_REF_LOCI_1 184404 chr3_KI270784v1_alt +HSCHR4_1_CTG9 alt-scaffold 4 Chromosome GL000257.2 = NT_167250.2 ALT_REF_LOCI_1 586476 chr4_GL000257v2_alt +HSCHR4_1_CTG12 alt-scaffold 4 Chromosome GL383527.1 = NW_003315914.1 ALT_REF_LOCI_1 164536 chr4_GL383527v1_alt +HSCHR4_1_CTG6 alt-scaffold 4 Chromosome GL383528.1 = NW_003315915.1 ALT_REF_LOCI_1 376187 chr4_GL383528v1_alt +HSCHR4_2_CTG12 alt-scaffold 4 Chromosome KI270785.1 = NT_187542.1 ALT_REF_LOCI_1 119912 chr4_KI270785v1_alt +HSCHR4_3_CTG12 alt-scaffold 4 Chromosome KI270786.1 = NT_187543.1 ALT_REF_LOCI_1 244096 chr4_KI270786v1_alt +HSCHR4_1_CTG8_1 alt-scaffold 4 Chromosome KI270787.1 = NT_187541.1 ALT_REF_LOCI_1 111943 chr4_KI270787v1_alt +HSCHR4_4_CTG12 alt-scaffold 4 Chromosome KI270788.1 = NT_187544.1 ALT_REF_LOCI_1 158965 chr4_KI270788v1_alt +HSCHR4_5_CTG12 alt-scaffold 4 Chromosome KI270789.1 = NT_187545.1 ALT_REF_LOCI_1 205944 chr4_KI270789v1_alt +HSCHR4_1_CTG4 alt-scaffold 4 Chromosome KI270790.1 = NT_187540.1 ALT_REF_LOCI_1 220246 chr4_KI270790v1_alt +HSCHR5_2_CTG1_1 alt-scaffold 5 Chromosome GL339449.2 = NW_003315917.2 ALT_REF_LOCI_1 1612928 chr5_GL339449v2_alt +HSCHR5_3_CTG1_1 alt-scaffold 5 Chromosome GL383530.1 = NW_003315918.1 ALT_REF_LOCI_1 101241 chr5_GL383530v1_alt +HSCHR5_1_CTG5 alt-scaffold 5 Chromosome GL383531.1 = NW_003315919.1 ALT_REF_LOCI_1 173459 chr5_GL383531v1_alt +HSCHR5_1_CTG1 alt-scaffold 5 Chromosome GL383532.1 = NW_003315920.1 ALT_REF_LOCI_1 82728 chr5_GL383532v1_alt +HSCHR5_2_CTG1 alt-scaffold 5 Chromosome GL949742.1 = NW_003571036.1 ALT_REF_LOCI_1 226852 chr5_GL949742v1_alt +HSCHR5_3_CTG1 alt-scaffold 5 Chromosome KI270791.1 = NT_187547.1 ALT_REF_LOCI_1 195710 chr5_KI270791v1_alt +HSCHR5_4_CTG1 alt-scaffold 5 Chromosome KI270792.1 = NT_187548.1 ALT_REF_LOCI_1 179043 chr5_KI270792v1_alt +HSCHR5_5_CTG1 alt-scaffold 5 Chromosome KI270793.1 = NT_187550.1 ALT_REF_LOCI_1 126136 chr5_KI270793v1_alt +HSCHR5_6_CTG1 alt-scaffold 5 Chromosome KI270794.1 = NT_187551.1 ALT_REF_LOCI_1 164558 chr5_KI270794v1_alt +HSCHR5_2_CTG5 alt-scaffold 5 Chromosome KI270795.1 = NT_187546.1 ALT_REF_LOCI_1 131892 chr5_KI270795v1_alt +HSCHR5_4_CTG1_1 alt-scaffold 5 Chromosome KI270796.1 = NT_187549.1 ALT_REF_LOCI_1 172708 chr5_KI270796v1_alt +HSCHR6_MHC_APD_CTG1 alt-scaffold 6 Chromosome GL000250.2 = NT_167244.2 ALT_REF_LOCI_1 4672374 chr6_GL000250v2_alt +HSCHR6_1_CTG2 alt-scaffold 6 Chromosome GL383533.1 = NW_003315921.1 ALT_REF_LOCI_1 124736 chr6_GL383533v1_alt +HSCHR6_1_CTG3 alt-scaffold 6 Chromosome KB021644.2 = NW_004166862.2 ALT_REF_LOCI_1 185823 chr6_KB021644v2_alt +HSCHR6_1_CTG4 alt-scaffold 6 Chromosome KI270797.1 = NT_187552.1 ALT_REF_LOCI_1 197536 chr6_KI270797v1_alt +HSCHR6_1_CTG5 alt-scaffold 6 Chromosome KI270798.1 = NT_187553.1 ALT_REF_LOCI_1 271782 chr6_KI270798v1_alt +HSCHR6_1_CTG6 alt-scaffold 6 Chromosome KI270799.1 = NT_187554.1 ALT_REF_LOCI_1 152148 chr6_KI270799v1_alt +HSCHR6_1_CTG7 alt-scaffold 6 Chromosome KI270800.1 = NT_187555.1 ALT_REF_LOCI_1 175808 chr6_KI270800v1_alt +HSCHR6_1_CTG8 alt-scaffold 6 Chromosome KI270801.1 = NT_187556.1 ALT_REF_LOCI_1 870480 chr6_KI270801v1_alt +HSCHR6_1_CTG9 alt-scaffold 6 Chromosome KI270802.1 = NT_187557.1 ALT_REF_LOCI_1 75005 chr6_KI270802v1_alt +HSCHR7_1_CTG6 alt-scaffold 7 Chromosome GL383534.2 = NW_003315922.2 ALT_REF_LOCI_1 119183 chr7_GL383534v2_alt +HSCHR7_2_CTG6 alt-scaffold 7 Chromosome KI270803.1 = NT_187562.1 ALT_REF_LOCI_1 1111570 chr7_KI270803v1_alt +HSCHR7_1_CTG1 alt-scaffold 7 Chromosome KI270804.1 = NT_187558.1 ALT_REF_LOCI_1 157952 chr7_KI270804v1_alt +HSCHR7_1_CTG7 alt-scaffold 7 Chromosome KI270805.1 = NT_187560.1 ALT_REF_LOCI_1 209988 chr7_KI270805v1_alt +HSCHR7_1_CTG4_4 alt-scaffold 7 Chromosome KI270806.1 = NT_187559.1 ALT_REF_LOCI_1 158166 chr7_KI270806v1_alt +HSCHR7_2_CTG7 alt-scaffold 7 Chromosome KI270807.1 = NT_187563.1 ALT_REF_LOCI_1 126434 chr7_KI270807v1_alt +HSCHR7_3_CTG6 alt-scaffold 7 Chromosome KI270808.1 = NT_187564.1 ALT_REF_LOCI_1 271455 chr7_KI270808v1_alt +HSCHR7_2_CTG4_4 alt-scaffold 7 Chromosome KI270809.1 = NT_187561.1 ALT_REF_LOCI_1 209586 chr7_KI270809v1_alt +HSCHR8_1_CTG7 alt-scaffold 8 Chromosome KI270810.1 = NT_187567.1 ALT_REF_LOCI_1 374415 chr8_KI270810v1_alt +HSCHR8_1_CTG1 alt-scaffold 8 Chromosome KI270811.1 = NT_187565.1 ALT_REF_LOCI_1 292436 chr8_KI270811v1_alt +HSCHR8_2_CTG1 alt-scaffold 8 Chromosome KI270812.1 = NT_187568.1 ALT_REF_LOCI_1 282736 chr8_KI270812v1_alt +HSCHR8_3_CTG1 alt-scaffold 8 Chromosome KI270813.1 = NT_187570.1 ALT_REF_LOCI_1 300230 chr8_KI270813v1_alt +HSCHR8_1_CTG6 alt-scaffold 8 Chromosome KI270814.1 = NT_187566.1 ALT_REF_LOCI_1 141812 chr8_KI270814v1_alt +HSCHR8_2_CTG7 alt-scaffold 8 Chromosome KI270815.1 = NT_187569.1 ALT_REF_LOCI_1 132244 chr8_KI270815v1_alt +HSCHR8_3_CTG7 alt-scaffold 8 Chromosome KI270816.1 = NT_187571.1 ALT_REF_LOCI_1 305841 chr8_KI270816v1_alt +HSCHR8_4_CTG7 alt-scaffold 8 Chromosome KI270817.1 = NT_187573.1 ALT_REF_LOCI_1 158983 chr8_KI270817v1_alt +HSCHR8_4_CTG1 alt-scaffold 8 Chromosome KI270818.1 = NT_187572.1 ALT_REF_LOCI_1 145606 chr8_KI270818v1_alt +HSCHR8_5_CTG7 alt-scaffold 8 Chromosome KI270819.1 = NT_187574.1 ALT_REF_LOCI_1 133535 chr8_KI270819v1_alt +HSCHR8_6_CTG7 alt-scaffold 8 Chromosome KI270820.1 = NT_187575.1 ALT_REF_LOCI_1 36640 chr8_KI270820v1_alt +HSCHR8_8_CTG1 alt-scaffold 8 Chromosome KI270821.1 = NT_187576.1 ALT_REF_LOCI_1 985506 chr8_KI270821v1_alt +HSCHR8_9_CTG1 alt-scaffold 8 Chromosome KI270822.1 = NT_187577.1 ALT_REF_LOCI_1 624492 chr8_KI270822v1_alt +HSCHR9_1_CTG1 alt-scaffold 9 Chromosome GL383539.1 = NW_003315928.1 ALT_REF_LOCI_1 162988 chr9_GL383539v1_alt +HSCHR9_1_CTG2 alt-scaffold 9 Chromosome GL383540.1 = NW_003315929.1 ALT_REF_LOCI_1 71551 chr9_GL383540v1_alt +HSCHR9_1_CTG3 alt-scaffold 9 Chromosome GL383541.1 = NW_003315930.1 ALT_REF_LOCI_1 171286 chr9_GL383541v1_alt +HSCHR9_1_CTG4 alt-scaffold 9 Chromosome GL383542.1 = NW_003315931.1 ALT_REF_LOCI_1 60032 chr9_GL383542v1_alt +HSCHR9_1_CTG5 alt-scaffold 9 Chromosome KI270823.1 = NT_187578.1 ALT_REF_LOCI_1 439082 chr9_KI270823v1_alt +HSCHR10_1_CTG1 alt-scaffold 10 Chromosome GL383545.1 = NW_003315934.1 ALT_REF_LOCI_1 179254 chr10_GL383545v1_alt +HSCHR10_1_CTG2 alt-scaffold 10 Chromosome GL383546.1 = NW_003315935.1 ALT_REF_LOCI_1 309802 chr10_GL383546v1_alt +HSCHR10_1_CTG3 alt-scaffold 10 Chromosome KI270824.1 = NT_187579.1 ALT_REF_LOCI_1 181496 chr10_KI270824v1_alt +HSCHR10_1_CTG4 alt-scaffold 10 Chromosome KI270825.1 <> na ALT_REF_LOCI_1 188315 chr10_KI270825v1_alt +HSCHR11_1_CTG1_1 alt-scaffold 11 Chromosome GL383547.1 = NW_003315936.1 ALT_REF_LOCI_1 154407 chr11_GL383547v1_alt +HG142_HG150_NOVEL_TEST alt-scaffold 11 Chromosome JH159136.1 = NW_003871073.1 ALT_REF_LOCI_1 200998 chr11_JH159136v1_alt +HG151_NOVEL_TEST alt-scaffold 11 Chromosome JH159137.1 = NW_003871074.1 ALT_REF_LOCI_1 191409 chr11_JH159137v1_alt +HSCHR11_1_CTG2 alt-scaffold 11 Chromosome KI270826.1 = NT_187581.1 ALT_REF_LOCI_1 186169 chr11_KI270826v1_alt +HSCHR11_1_CTG3 alt-scaffold 11 Chromosome KI270827.1 = NT_187582.1 ALT_REF_LOCI_1 67707 chr11_KI270827v1_alt +HSCHR11_1_CTG5 alt-scaffold 11 Chromosome KI270829.1 = NT_187583.1 ALT_REF_LOCI_1 204059 chr11_KI270829v1_alt +HSCHR11_1_CTG6 alt-scaffold 11 Chromosome KI270830.1 = NT_187584.1 ALT_REF_LOCI_1 177092 chr11_KI270830v1_alt +HSCHR11_1_CTG7 alt-scaffold 11 Chromosome KI270831.1 = NT_187585.1 ALT_REF_LOCI_1 296895 chr11_KI270831v1_alt +HSCHR11_1_CTG8 alt-scaffold 11 Chromosome KI270832.1 = NT_187586.1 ALT_REF_LOCI_1 210133 chr11_KI270832v1_alt +HSCHR12_1_CTG2 alt-scaffold 12 Chromosome GL383549.1 = NW_003315938.1 ALT_REF_LOCI_1 120804 chr12_GL383549v1_alt +HSCHR12_1_CTG2_1 alt-scaffold 12 Chromosome GL383550.2 = NW_003315939.2 ALT_REF_LOCI_1 169178 chr12_GL383550v2_alt +HSCHR12_4_CTG2_1 alt-scaffold 12 Chromosome GL383551.1 = NW_003315940.1 ALT_REF_LOCI_1 184319 chr12_GL383551v1_alt +HSCHR12_2_CTG2_1 alt-scaffold 12 Chromosome GL383552.1 = NW_003315941.1 ALT_REF_LOCI_1 138655 chr12_GL383552v1_alt +HSCHR12_3_CTG2_1 alt-scaffold 12 Chromosome GL383553.2 = NW_003315942.2 ALT_REF_LOCI_1 152874 chr12_GL383553v2_alt +HSCHR12_1_CTG1 alt-scaffold 12 Chromosome GL877875.1 = NW_003571049.1 ALT_REF_LOCI_1 167313 chr12_GL877875v1_alt +HSCHR12_2_CTG2 alt-scaffold 12 Chromosome GL877876.1 = NW_003571050.1 ALT_REF_LOCI_1 408271 chr12_GL877876v1_alt +HSCHR12_5_CTG2_1 alt-scaffold 12 Chromosome KI270833.1 = NT_187589.1 ALT_REF_LOCI_1 76061 chr12_KI270833v1_alt +HSCHR12_6_CTG2_1 alt-scaffold 12 Chromosome KI270834.1 = NT_187590.1 ALT_REF_LOCI_1 119498 chr12_KI270834v1_alt +HSCHR12_4_CTG2 alt-scaffold 12 Chromosome KI270835.1 = NT_187587.1 ALT_REF_LOCI_1 238139 chr12_KI270835v1_alt +HSCHR12_7_CTG2_1 alt-scaffold 12 Chromosome KI270836.1 = NT_187591.1 ALT_REF_LOCI_1 56134 chr12_KI270836v1_alt +HSCHR12_5_CTG2 alt-scaffold 12 Chromosome KI270837.1 = NT_187588.1 ALT_REF_LOCI_1 40090 chr12_KI270837v1_alt +HSCHR13_1_CTG1 alt-scaffold 13 Chromosome KI270838.1 = NT_187592.1 ALT_REF_LOCI_1 306913 chr13_KI270838v1_alt +HSCHR13_1_CTG2 alt-scaffold 13 Chromosome KI270839.1 = NT_187593.1 ALT_REF_LOCI_1 180306 chr13_KI270839v1_alt +HSCHR13_1_CTG3 alt-scaffold 13 Chromosome KI270840.1 = NT_187594.1 ALT_REF_LOCI_1 191684 chr13_KI270840v1_alt +HSCHR13_1_CTG4 alt-scaffold 13 Chromosome KI270841.1 = NT_187595.1 ALT_REF_LOCI_1 169134 chr13_KI270841v1_alt +HSCHR13_1_CTG5 alt-scaffold 13 Chromosome KI270842.1 = NT_187596.1 ALT_REF_LOCI_1 37287 chr13_KI270842v1_alt +HSCHR13_1_CTG6 alt-scaffold 13 Chromosome KI270843.1 = NT_187597.1 ALT_REF_LOCI_1 103832 chr13_KI270843v1_alt +HSCHR14_1_CTG1 alt-scaffold 14 Chromosome KI270844.1 = NT_187598.1 ALT_REF_LOCI_1 322166 chr14_KI270844v1_alt +HSCHR14_2_CTG1 alt-scaffold 14 Chromosome KI270845.1 = NT_187599.1 ALT_REF_LOCI_1 180703 chr14_KI270845v1_alt +HSCHR14_3_CTG1 alt-scaffold 14 Chromosome KI270846.1 = NT_187600.1 ALT_REF_LOCI_1 1351393 chr14_KI270846v1_alt +HSCHR14_7_CTG1 alt-scaffold 14 Chromosome KI270847.1 = NT_187601.1 ALT_REF_LOCI_1 1511111 chr14_KI270847v1_alt +HSCHR15_1_CTG8 alt-scaffold 15 Chromosome GL383554.1 = NW_003315943.1 ALT_REF_LOCI_1 296527 chr15_GL383554v1_alt +HSCHR15_2_CTG8 alt-scaffold 15 Chromosome GL383555.2 = NW_003315944.2 ALT_REF_LOCI_1 388773 chr15_GL383555v2_alt +HSCHR15_1_CTG3 alt-scaffold 15 Chromosome KI270848.1 = NT_187603.1 ALT_REF_LOCI_1 327382 chr15_KI270848v1_alt +HSCHR15_3_CTG8 alt-scaffold 15 Chromosome KI270849.1 = NT_187605.1 ALT_REF_LOCI_1 244917 chr15_KI270849v1_alt +HSCHR15_5_CTG8 alt-scaffold 15 Chromosome KI270850.1 = NT_187606.1 ALT_REF_LOCI_1 430880 chr15_KI270850v1_alt +HSCHR15_3_CTG3 alt-scaffold 15 Chromosome KI270851.1 = NT_187604.1 ALT_REF_LOCI_1 263054 chr15_KI270851v1_alt +HSCHR15_1_CTG1 alt-scaffold 15 Chromosome KI270852.1 = NT_187602.1 ALT_REF_LOCI_1 478999 chr15_KI270852v1_alt +HSCHR16_1_CTG3_1 alt-scaffold 16 Chromosome GL383556.1 = NW_003315945.1 ALT_REF_LOCI_1 192462 chr16_GL383556v1_alt +HSCHR16_2_CTG3_1 alt-scaffold 16 Chromosome GL383557.1 = NW_003315946.1 ALT_REF_LOCI_1 89672 chr16_GL383557v1_alt +HSCHR16_1_CTG1 alt-scaffold 16 Chromosome KI270853.1 = NT_187607.1 ALT_REF_LOCI_1 2659700 chr16_KI270853v1_alt +HSCHR16_CTG2 alt-scaffold 16 Chromosome KI270854.1 = NT_187610.1 ALT_REF_LOCI_1 134193 chr16_KI270854v1_alt +HSCHR16_3_CTG1 alt-scaffold 16 Chromosome KI270855.1 = NT_187608.1 ALT_REF_LOCI_1 232857 chr16_KI270855v1_alt +HSCHR16_4_CTG1 alt-scaffold 16 Chromosome KI270856.1 = NT_187609.1 ALT_REF_LOCI_1 63982 chr16_KI270856v1_alt +HSCHR17_1_CTG5 alt-scaffold 17 Chromosome GL000258.2 = NT_167251.2 ALT_REF_LOCI_1 1821992 chr17_GL000258v2_alt +HSCHR17_1_CTG1 alt-scaffold 17 Chromosome GL383563.3 = NW_003315952.3 ALT_REF_LOCI_1 375691 chr17_GL383563v3_alt +HSCHR17_1_CTG4 alt-scaffold 17 Chromosome GL383564.2 = NW_003315953.2 ALT_REF_LOCI_1 133151 chr17_GL383564v2_alt +HSCHR17_2_CTG4 alt-scaffold 17 Chromosome GL383565.1 = NW_003315954.1 ALT_REF_LOCI_1 223995 chr17_GL383565v1_alt +HSCHR17_3_CTG4 alt-scaffold 17 Chromosome GL383566.1 = NW_003315955.1 ALT_REF_LOCI_1 90219 chr17_GL383566v1_alt +HSCHR17_4_CTG4 alt-scaffold 17 Chromosome JH159146.1 = NW_003871091.1 ALT_REF_LOCI_1 278131 chr17_JH159146v1_alt +HSCHR17_5_CTG4 alt-scaffold 17 Chromosome JH159147.1 = NW_003871092.1 ALT_REF_LOCI_1 70345 chr17_JH159147v1_alt +HSCHR17_7_CTG4 alt-scaffold 17 Chromosome KI270857.1 = NT_187614.1 ALT_REF_LOCI_1 2877074 chr17_KI270857v1_alt +HSCHR17_8_CTG4 alt-scaffold 17 Chromosome KI270858.1 = NT_187615.1 ALT_REF_LOCI_1 235827 chr17_KI270858v1_alt +HSCHR17_9_CTG4 alt-scaffold 17 Chromosome KI270859.1 = NT_187616.1 ALT_REF_LOCI_1 108763 chr17_KI270859v1_alt +HSCHR17_1_CTG9 alt-scaffold 17 Chromosome KI270860.1 = NT_187612.1 ALT_REF_LOCI_1 178921 chr17_KI270860v1_alt +HSCHR17_1_CTG2 alt-scaffold 17 Chromosome KI270861.1 = NT_187611.1 ALT_REF_LOCI_1 196688 chr17_KI270861v1_alt +HSCHR17_2_CTG2 alt-scaffold 17 Chromosome KI270862.1 = NT_187613.1 ALT_REF_LOCI_1 391357 chr17_KI270862v1_alt +HSCHR18_1_CTG1_1 alt-scaffold 18 Chromosome GL383567.1 = NW_003315956.1 ALT_REF_LOCI_1 289831 chr18_GL383567v1_alt +HSCHR18_1_CTG2 alt-scaffold 18 Chromosome GL383568.1 = NW_003315957.1 ALT_REF_LOCI_1 104552 chr18_GL383568v1_alt +HSCHR18_1_CTG2_1 alt-scaffold 18 Chromosome GL383569.1 = NW_003315958.1 ALT_REF_LOCI_1 167950 chr18_GL383569v1_alt +HSCHR18_2_CTG1_1 alt-scaffold 18 Chromosome GL383570.1 = NW_003315959.1 ALT_REF_LOCI_1 164789 chr18_GL383570v1_alt +HSCHR18_2_CTG2 alt-scaffold 18 Chromosome GL383571.1 = NW_003315960.1 ALT_REF_LOCI_1 198278 chr18_GL383571v1_alt +HSCHR18_2_CTG2_1 alt-scaffold 18 Chromosome GL383572.1 = NW_003315961.1 ALT_REF_LOCI_1 159547 chr18_GL383572v1_alt +HSCHR18_3_CTG2_1 alt-scaffold 18 Chromosome KI270863.1 = NT_187617.1 ALT_REF_LOCI_1 167999 chr18_KI270863v1_alt +HSCHR18_4_CTG1_1 alt-scaffold 18 Chromosome KI270864.1 = NT_187618.1 ALT_REF_LOCI_1 111737 chr18_KI270864v1_alt +HSCHR19_1_CTG2 alt-scaffold 19 Chromosome GL383573.1 = NW_003315962.1 ALT_REF_LOCI_1 385657 chr19_GL383573v1_alt +HSCHR19_1_CTG3_1 alt-scaffold 19 Chromosome GL383574.1 = NW_003315963.1 ALT_REF_LOCI_1 155864 chr19_GL383574v1_alt +HSCHR19_2_CTG2 alt-scaffold 19 Chromosome GL383575.2 = NW_003315964.2 ALT_REF_LOCI_1 170222 chr19_GL383575v2_alt +HSCHR19_3_CTG2 alt-scaffold 19 Chromosome GL383576.1 = NW_003315965.1 ALT_REF_LOCI_1 188024 chr19_GL383576v1_alt +HSCHR19LRC_COX1_CTG3_1 alt-scaffold 19 Chromosome GL949746.1 = NW_003571054.1 ALT_REF_LOCI_1 987716 chr19_GL949746v1_alt +HSCHR19_4_CTG2 alt-scaffold 19 Chromosome KI270865.1 = NT_187621.1 ALT_REF_LOCI_1 52969 chr19_KI270865v1_alt +HSCHR19_2_CTG3_1 alt-scaffold 19 Chromosome KI270866.1 = NT_187619.1 ALT_REF_LOCI_1 43156 chr19_KI270866v1_alt +HSCHR19_3_CTG3_1 alt-scaffold 19 Chromosome KI270867.1 = NT_187620.1 ALT_REF_LOCI_1 233762 chr19_KI270867v1_alt +HSCHR19_5_CTG2 alt-scaffold 19 Chromosome KI270868.1 = NT_187622.1 ALT_REF_LOCI_1 61734 chr19_KI270868v1_alt +HSCHR20_1_CTG1 alt-scaffold 20 Chromosome GL383577.2 = NW_003315966.2 ALT_REF_LOCI_1 128386 chr20_GL383577v2_alt +HSCHR20_1_CTG2 alt-scaffold 20 Chromosome KI270869.1 = NT_187623.1 ALT_REF_LOCI_1 118774 chr20_KI270869v1_alt +HSCHR20_1_CTG3 alt-scaffold 20 Chromosome KI270870.1 = NT_187624.1 ALT_REF_LOCI_1 183433 chr20_KI270870v1_alt +HSCHR20_1_CTG4 alt-scaffold 20 Chromosome KI270871.1 = NT_187625.1 ALT_REF_LOCI_1 58661 chr20_KI270871v1_alt +HSCHR21_1_CTG1_1 alt-scaffold 21 Chromosome GL383578.2 = NW_003315967.2 ALT_REF_LOCI_1 63917 chr21_GL383578v2_alt +HSCHR21_2_CTG1_1 alt-scaffold 21 Chromosome GL383579.2 = NW_003315968.2 ALT_REF_LOCI_1 201197 chr21_GL383579v2_alt +HSCHR21_3_CTG1_1 alt-scaffold 21 Chromosome GL383580.2 = NW_003315969.2 ALT_REF_LOCI_1 74653 chr21_GL383580v2_alt +HSCHR21_4_CTG1_1 alt-scaffold 21 Chromosome GL383581.2 = NW_003315970.2 ALT_REF_LOCI_1 116689 chr21_GL383581v2_alt +HSCHR21_5_CTG2 alt-scaffold 21 Chromosome KI270872.1 = NT_187626.1 ALT_REF_LOCI_1 82692 chr21_KI270872v1_alt +HSCHR21_6_CTG1_1 alt-scaffold 21 Chromosome KI270873.1 = NT_187627.1 ALT_REF_LOCI_1 143900 chr21_KI270873v1_alt +HSCHR21_8_CTG1_1 alt-scaffold 21 Chromosome KI270874.1 = NT_187628.1 ALT_REF_LOCI_1 166743 chr21_KI270874v1_alt +HSCHR22_1_CTG1 alt-scaffold 22 Chromosome GL383582.2 = NW_003315971.2 ALT_REF_LOCI_1 162811 chr22_GL383582v2_alt +HSCHR22_1_CTG2 alt-scaffold 22 Chromosome GL383583.2 = NW_003315972.2 ALT_REF_LOCI_1 96924 chr22_GL383583v2_alt +HSCHR22_1_CTG3 alt-scaffold 22 Chromosome KI270875.1 = NT_187629.1 ALT_REF_LOCI_1 259914 chr22_KI270875v1_alt +HSCHR22_1_CTG4 alt-scaffold 22 Chromosome KI270876.1 = NT_187630.1 ALT_REF_LOCI_1 263666 chr22_KI270876v1_alt +HSCHR22_1_CTG5 alt-scaffold 22 Chromosome KI270877.1 = NT_187631.1 ALT_REF_LOCI_1 101331 chr22_KI270877v1_alt +HSCHR22_1_CTG6 alt-scaffold 22 Chromosome KI270878.1 = NT_187632.1 ALT_REF_LOCI_1 186262 chr22_KI270878v1_alt +HSCHR22_1_CTG7 alt-scaffold 22 Chromosome KI270879.1 = NT_187633.1 ALT_REF_LOCI_1 304135 chr22_KI270879v1_alt +HSCHRX_1_CTG3 alt-scaffold X Chromosome KI270880.1 = NT_187634.1 ALT_REF_LOCI_1 284869 chrX_KI270880v1_alt +HSCHRX_2_CTG12 alt-scaffold X Chromosome KI270881.1 = NT_187635.1 ALT_REF_LOCI_1 144206 chrX_KI270881v1_alt +HSCHR1_ALT2_1_CTG32_1 alt-scaffold 1 Chromosome KI270892.1 = NT_187646.1 ALT_REF_LOCI_2 162212 chr1_KI270892v1_alt +HSCHR2_2_CTG15 alt-scaffold 2 Chromosome KI270893.1 = NT_187647.1 ALT_REF_LOCI_2 161218 chr2_KI270893v1_alt +HSCHR2_2_CTG7 alt-scaffold 2 Chromosome KI270894.1 = NT_187648.1 ALT_REF_LOCI_2 214158 chr2_KI270894v1_alt +HSCHR3_3_CTG3 alt-scaffold 3 Chromosome KI270895.1 = NT_187649.1 ALT_REF_LOCI_2 162896 chr3_KI270895v1_alt +HSCHR4_6_CTG12 alt-scaffold 4 Chromosome KI270896.1 = NT_187650.1 ALT_REF_LOCI_2 378547 chr4_KI270896v1_alt +HSCHR5_1_CTG1_1 alt-scaffold 5 Chromosome KI270897.1 = NT_187651.1 ALT_REF_LOCI_2 1144418 chr5_KI270897v1_alt +HSCHR5_3_CTG5 alt-scaffold 5 Chromosome KI270898.1 = NT_187652.1 ALT_REF_LOCI_2 130957 chr5_KI270898v1_alt +HSCHR6_MHC_COX_CTG1 alt-scaffold 6 Chromosome GL000251.2 = NT_113891.3 ALT_REF_LOCI_2 4795265 chr6_GL000251v2_alt +HSCHR7_2_CTG1 alt-scaffold 7 Chromosome KI270899.1 = NT_187653.1 ALT_REF_LOCI_2 190869 chr7_KI270899v1_alt +HSCHR8_5_CTG1 alt-scaffold 8 Chromosome KI270900.1 = NT_187654.1 ALT_REF_LOCI_2 318687 chr8_KI270900v1_alt +HSCHR8_6_CTG1 alt-scaffold 8 Chromosome KI270901.1 = NT_187655.1 ALT_REF_LOCI_2 136959 chr8_KI270901v1_alt +HSCHR11_2_CTG1 alt-scaffold 11 Chromosome KI270902.1 = NT_187656.1 ALT_REF_LOCI_2 106711 chr11_KI270902v1_alt +HSCHR11_2_CTG1_1 alt-scaffold 11 Chromosome KI270903.1 = NT_187657.1 ALT_REF_LOCI_2 214625 chr11_KI270903v1_alt +HSCHR12_3_CTG2 alt-scaffold 12 Chromosome KI270904.1 = NT_187658.1 ALT_REF_LOCI_2 572349 chr12_KI270904v1_alt +HSCHR15_4_CTG8 alt-scaffold 15 Chromosome KI270905.1 = NT_187660.1 ALT_REF_LOCI_2 5161414 chr15_KI270905v1_alt +HSCHR15_2_CTG3 alt-scaffold 15 Chromosome KI270906.1 = NT_187659.1 ALT_REF_LOCI_2 196384 chr15_KI270906v1_alt +HSCHR17_6_CTG4 alt-scaffold 17 Chromosome JH159148.1 = NW_003871093.1 ALT_REF_LOCI_2 88070 chr17_JH159148v1_alt +HSCHR17_2_CTG1 alt-scaffold 17 Chromosome KI270907.1 = NT_187662.1 ALT_REF_LOCI_2 137721 chr17_KI270907v1_alt +HSCHR17_2_CTG5 alt-scaffold 17 Chromosome KI270908.1 = NT_187663.1 ALT_REF_LOCI_2 1423190 chr17_KI270908v1_alt +HSCHR17_10_CTG4 alt-scaffold 17 Chromosome KI270909.1 = NT_187661.1 ALT_REF_LOCI_2 325800 chr17_KI270909v1_alt +HSCHR17_3_CTG2 alt-scaffold 17 Chromosome KI270910.1 = NT_187664.1 ALT_REF_LOCI_2 157099 chr17_KI270910v1_alt +HSCHR18_ALT2_CTG2_1 alt-scaffold 18 Chromosome KI270911.1 = NT_187666.1 ALT_REF_LOCI_2 157710 chr18_KI270911v1_alt +HSCHR18_ALT21_CTG2_1 alt-scaffold 18 Chromosome KI270912.1 = NT_187665.1 ALT_REF_LOCI_2 174061 chr18_KI270912v1_alt +HSCHR19LRC_COX2_CTG3_1 alt-scaffold 19 Chromosome GL949747.2 = NW_003571055.2 ALT_REF_LOCI_2 729520 chr19_GL949747v2_alt +HSCHR22_2_CTG1 alt-scaffold 22 Chromosome KB663609.1 = NW_004504305.1 ALT_REF_LOCI_2 74013 chr22_KB663609v1_alt +HSCHRX_2_CTG3 alt-scaffold X Chromosome KI270913.1 = NT_187667.1 ALT_REF_LOCI_2 274009 chrX_KI270913v1_alt +HSCHR3_4_CTG3 alt-scaffold 3 Chromosome KI270924.1 = NT_187678.1 ALT_REF_LOCI_3 166540 chr3_KI270924v1_alt +HSCHR4_7_CTG12 alt-scaffold 4 Chromosome KI270925.1 = NT_187679.1 ALT_REF_LOCI_3 555799 chr4_KI270925v1_alt +HSCHR6_MHC_DBB_CTG1 alt-scaffold 6 Chromosome GL000252.2 = NT_167245.2 ALT_REF_LOCI_3 4604811 chr6_GL000252v2_alt +HSCHR8_7_CTG1 alt-scaffold 8 Chromosome KI270926.1 = NT_187680.1 ALT_REF_LOCI_3 229282 chr8_KI270926v1_alt +HSCHR11_3_CTG1 alt-scaffold 11 Chromosome KI270927.1 = NT_187681.1 ALT_REF_LOCI_3 218612 chr11_KI270927v1_alt +HSCHR19LRC_LRC_I_CTG3_1 alt-scaffold 19 Chromosome GL949748.2 = NW_003571056.2 ALT_REF_LOCI_3 1064304 chr19_GL949748v2_alt +HSCHR22_3_CTG1 alt-scaffold 22 Chromosome KI270928.1 = NT_187682.1 ALT_REF_LOCI_3 176103 chr22_KI270928v1_alt +HSCHR3_5_CTG3 alt-scaffold 3 Chromosome KI270934.1 = NT_187688.1 ALT_REF_LOCI_4 163458 chr3_KI270934v1_alt +HSCHR6_MHC_MANN_CTG1 alt-scaffold 6 Chromosome GL000253.2 = NT_167246.2 ALT_REF_LOCI_4 4677643 chr6_GL000253v2_alt +HSCHR19LRC_LRC_J_CTG3_1 alt-scaffold 19 Chromosome GL949749.2 = NW_003571057.2 ALT_REF_LOCI_4 1091841 chr19_GL949749v2_alt +HSCHR3_6_CTG3 alt-scaffold 3 Chromosome KI270935.1 = NT_187689.1 ALT_REF_LOCI_5 197351 chr3_KI270935v1_alt +HSCHR6_MHC_MCF_CTG1 alt-scaffold 6 Chromosome GL000254.2 = NT_167247.2 ALT_REF_LOCI_5 4827813 chr6_GL000254v2_alt +HSCHR19LRC_LRC_S_CTG3_1 alt-scaffold 19 Chromosome GL949750.2 = NW_003571058.2 ALT_REF_LOCI_5 1066390 chr19_GL949750v2_alt +HSCHR3_7_CTG3 alt-scaffold 3 Chromosome KI270936.1 = NT_187690.1 ALT_REF_LOCI_6 164170 chr3_KI270936v1_alt +HSCHR6_MHC_QBL_CTG1 alt-scaffold 6 Chromosome GL000255.2 = NT_167248.2 ALT_REF_LOCI_6 4606388 chr6_GL000255v2_alt +HSCHR19LRC_LRC_T_CTG3_1 alt-scaffold 19 Chromosome GL949751.2 = NW_003571059.2 ALT_REF_LOCI_6 1002683 chr19_GL949751v2_alt +HSCHR3_8_CTG3 alt-scaffold 3 Chromosome KI270937.1 = NT_187691.1 ALT_REF_LOCI_7 165607 chr3_KI270937v1_alt +HSCHR6_MHC_SSTO_CTG1 alt-scaffold 6 Chromosome GL000256.2 = NT_167249.2 ALT_REF_LOCI_7 4929269 chr6_GL000256v2_alt +HSCHR19LRC_PGF1_CTG3_1 alt-scaffold 19 Chromosome GL949752.1 = NW_003571060.1 ALT_REF_LOCI_7 987100 chr19_GL949752v1_alt +HSCHR6_8_CTG1 alt-scaffold 6 Chromosome KI270758.1 = NT_187692.1 ALT_REF_LOCI_8 76752 chr6_KI270758v1_alt +HSCHR19LRC_PGF2_CTG3_1 alt-scaffold 19 Chromosome GL949753.2 = NW_003571061.2 ALT_REF_LOCI_8 796479 chr19_GL949753v2_alt +HSCHR19_4_CTG3_1 alt-scaffold 19 Chromosome KI270938.1 = NT_187693.1 ALT_REF_LOCI_9 1066800 chr19_KI270938v1_alt +HSCHR19KIR_FH15_B_HAP_CTG3_1 alt-scaffold 19 Chromosome KI270882.1 = NT_187636.1 ALT_REF_LOCI_10 248807 chr19_KI270882v1_alt +HSCHR19KIR_G085_A_HAP_CTG3_1 alt-scaffold 19 Chromosome KI270883.1 = NT_187637.1 ALT_REF_LOCI_11 170399 chr19_KI270883v1_alt +HSCHR19KIR_G085_BA1_HAP_CTG3_1 alt-scaffold 19 Chromosome KI270884.1 = NT_187638.1 ALT_REF_LOCI_12 157053 chr19_KI270884v1_alt +HSCHR19KIR_G248_A_HAP_CTG3_1 alt-scaffold 19 Chromosome KI270885.1 = NT_187639.1 ALT_REF_LOCI_13 171027 chr19_KI270885v1_alt +HSCHR19KIR_G248_BA2_HAP_CTG3_1 alt-scaffold 19 Chromosome KI270886.1 = NT_187640.1 ALT_REF_LOCI_14 204239 chr19_KI270886v1_alt +HSCHR19KIR_GRC212_AB_HAP_CTG3_1 alt-scaffold 19 Chromosome KI270887.1 = NT_187641.1 ALT_REF_LOCI_15 209512 chr19_KI270887v1_alt +HSCHR19KIR_GRC212_BA1_HAP_CTG3_1 alt-scaffold 19 Chromosome KI270888.1 = NT_187642.1 ALT_REF_LOCI_16 155532 chr19_KI270888v1_alt +HSCHR19KIR_LUCE_A_HAP_CTG3_1 alt-scaffold 19 Chromosome KI270889.1 = NT_187643.1 ALT_REF_LOCI_17 170698 chr19_KI270889v1_alt +HSCHR19KIR_LUCE_BDEL_HAP_CTG3_1 alt-scaffold 19 Chromosome KI270890.1 = NT_187644.1 ALT_REF_LOCI_18 184499 chr19_KI270890v1_alt +HSCHR19KIR_RSH_A_HAP_CTG3_1 alt-scaffold 19 Chromosome KI270891.1 = NT_187645.1 ALT_REF_LOCI_19 170680 chr19_KI270891v1_alt +HSCHR19KIR_RSH_BA2_HAP_CTG3_1 alt-scaffold 19 Chromosome KI270914.1 = NT_187668.1 ALT_REF_LOCI_20 205194 chr19_KI270914v1_alt +HSCHR19KIR_T7526_A_HAP_CTG3_1 alt-scaffold 19 Chromosome KI270915.1 = NT_187669.1 ALT_REF_LOCI_21 170665 chr19_KI270915v1_alt +HSCHR19KIR_T7526_BDEL_HAP_CTG3_1 alt-scaffold 19 Chromosome KI270916.1 = NT_187670.1 ALT_REF_LOCI_22 184516 chr19_KI270916v1_alt +HSCHR19KIR_ABC08_A1_HAP_CTG3_1 alt-scaffold 19 Chromosome KI270917.1 = NT_187671.1 ALT_REF_LOCI_23 190932 chr19_KI270917v1_alt +HSCHR19KIR_ABC08_AB_HAP_C_P_CTG3_1 alt-scaffold 19 Chromosome KI270918.1 = NT_187672.1 ALT_REF_LOCI_24 123111 chr19_KI270918v1_alt +HSCHR19KIR_ABC08_AB_HAP_T_P_CTG3_1 alt-scaffold 19 Chromosome KI270919.1 = NT_187673.1 ALT_REF_LOCI_25 170701 chr19_KI270919v1_alt +HSCHR19KIR_FH05_A_HAP_CTG3_1 alt-scaffold 19 Chromosome KI270920.1 = NT_187674.1 ALT_REF_LOCI_26 198005 chr19_KI270920v1_alt +HSCHR19KIR_FH05_B_HAP_CTG3_1 alt-scaffold 19 Chromosome KI270921.1 = NT_187675.1 ALT_REF_LOCI_27 282224 chr19_KI270921v1_alt +HSCHR19KIR_FH06_A_HAP_CTG3_1 alt-scaffold 19 Chromosome KI270922.1 = NT_187676.1 ALT_REF_LOCI_28 187935 chr19_KI270922v1_alt +HSCHR19KIR_FH06_BA1_HAP_CTG3_1 alt-scaffold 19 Chromosome KI270923.1 = NT_187677.1 ALT_REF_LOCI_29 189352 chr19_KI270923v1_alt +HSCHR19KIR_FH08_A_HAP_CTG3_1 alt-scaffold 19 Chromosome KI270929.1 = NT_187683.1 ALT_REF_LOCI_30 186203 chr19_KI270929v1_alt +HSCHR19KIR_FH08_BAX_HAP_CTG3_1 alt-scaffold 19 Chromosome KI270930.1 = NT_187684.1 ALT_REF_LOCI_31 200773 chr19_KI270930v1_alt +HSCHR19KIR_FH13_A_HAP_CTG3_1 alt-scaffold 19 Chromosome KI270931.1 = NT_187685.1 ALT_REF_LOCI_32 170148 chr19_KI270931v1_alt +HSCHR19KIR_FH13_BA2_HAP_CTG3_1 alt-scaffold 19 Chromosome KI270932.1 = NT_187686.1 ALT_REF_LOCI_33 215732 chr19_KI270932v1_alt +HSCHR19KIR_FH15_A_HAP_CTG3_1 alt-scaffold 19 Chromosome KI270933.1 = NT_187687.1 ALT_REF_LOCI_34 170537 chr19_KI270933v1_alt +HSCHR19KIR_RP5_B_HAP_CTG3_1 alt-scaffold 19 Chromosome GL000209.2 = NT_113949.2 ALT_REF_LOCI_35 177381 chr19_GL000209v2_alt +MT assembled-molecule MT Mitochondrion J01415.2 = NC_012920.1 non-nuclear 16569 chrM diff --git a/scripts_build/dbSnp/chr2id.txt b/scripts_build/dbSnp/chr2id.txt new file mode 100644 index 000000000..0a9d7ac66 --- /dev/null +++ b/scripts_build/dbSnp/chr2id.txt @@ -0,0 +1,709 @@ +1 NC_000001.11 +2 NC_000002.12 +3 NC_000003.12 +4 NC_000004.12 +5 NC_000005.10 +6 NC_000006.12 +7 NC_000007.14 +8 NC_000008.11 +9 NC_000009.12 +10 NC_000010.11 +11 NC_000011.10 +12 NC_000012.12 +13 NC_000013.11 +14 NC_000014.9 +15 NC_000015.10 +16 NC_000016.10 +17 NC_000017.11 +18 NC_000018.10 +19 NC_000019.10 +20 NC_000020.11 +21 NC_000021.9 +22 NC_000022.11 +X NC_000023.11 +Y NC_000024.10 +HSCHR1_CTG1_UNLOCALIZED NT_187361.1 +HSCHR1_CTG2_UNLOCALIZED NT_187362.1 +HSCHR1_CTG3_UNLOCALIZED NT_187363.1 +HSCHR1_CTG4_UNLOCALIZED NT_187364.1 +HSCHR1_CTG5_UNLOCALIZED NT_187365.1 +HSCHR1_CTG6_UNLOCALIZED NT_187366.1 +HSCHR1_CTG7_UNLOCALIZED NT_187367.1 +HSCHR1_CTG8_UNLOCALIZED NT_187368.1 +HSCHR1_CTG9_UNLOCALIZED NT_187369.1 +HSCHR2_RANDOM_CTG1 NT_187370.1 +HSCHR2_RANDOM_CTG2 NT_187371.1 +HSCHR3UN_CTG2 NT_167215.1 +HSCHR4_RANDOM_CTG4 NT_113793.3 +HSCHR5_RANDOM_CTG1 NT_113948.1 +HSCHR9_UNLOCALIZED_CTG1 NT_187372.1 +HSCHR9_UNLOCALIZED_CTG2 NT_187373.1 +HSCHR9_UNLOCALIZED_CTG3 NT_187374.1 +HSCHR9_UNLOCALIZED_CTG4 NT_187375.1 +HSCHR11_CTG1_UNLOCALIZED na +HSCHR14_CTG1_UNLOCALIZED NT_113796.3 +HSCHR14_CTG4_UNLOCALIZED NT_113888.1 +HSCHR14_CTG2_UNLOCALIZED NT_167219.1 +HSCHR14_CTG3_UNLOCALIZED NT_187377.1 +HSCHR14_CTG5_UNLOCALIZED NT_187378.1 +HSCHR14_CTG6_UNLOCALIZED NT_187379.1 +HSCHR14_CTG7_UNLOCALIZED NT_187380.1 +HSCHR14_CTG8_UNLOCALIZED NT_187381.1 +HSCHR15_RANDOM_CTG1 NT_187382.1 +HSCHR16_RANDOM_CTG1 NT_187383.1 +HSCHR17_RANDOM_CTG3 NT_113930.2 +HSCHR17_RANDOM_CTG4 NT_187384.1 +HSCHR17_RANDOM_CTG5 NT_187385.1 +HSCHR22_UNLOCALIZED_CTG1 NT_187386.1 +HSCHR22_UNLOCALIZED_CTG2 NT_187387.1 +HSCHR22_UNLOCALIZED_CTG3 NT_187388.1 +HSCHR22_UNLOCALIZED_CTG4 na +HSCHR22_UNLOCALIZED_CTG5 NT_187390.1 +HSCHR22_UNLOCALIZED_CTG6 NT_187391.1 +HSCHR22_UNLOCALIZED_CTG7 NT_187392.1 +HSCHR22_UNLOCALIZED_CTG8 NT_187393.1 +HSCHR22_UNLOCALIZED_CTG9 NT_187394.1 +HSCHRY_RANDOM_CTG1 NT_187395.1 +HSCHRUN_RANDOM_CTG1 NT_113901.1 +HSCHRUN_RANDOM_CTG2 NT_167208.1 +HSCHRUN_RANDOM_CTG4 NT_167209.1 +HSCHRUN_RANDOM_CTG6 NT_167211.2 +HSCHRUN_RANDOM_CTG9 NT_113889.1 +HSCHRUN_RANDOM_CTG10 NT_167213.1 +HSCHRUN_RANDOM_CTG11 NT_167214.1 +HSCHRUN_RANDOM_CTG16 NT_167218.1 +HSCHRUN_RANDOM_CTG19 NT_167220.1 +HSCHRUN_RANDOM_100 NT_187396.1 +HSCHRUN_RANDOM_102 NT_187398.1 +HSCHRUN_RANDOM_101 NT_187397.1 +HSCHRUN_RANDOM_103 NT_187399.1 +HSCHRUN_RANDOM_106 NT_187402.1 +HSCHRUN_RANDOM_110 NT_187406.1 +HSCHRUN_RANDOM_109 NT_187405.1 +HSCHRUN_RANDOM_108 NT_187404.1 +HSCHRUN_RANDOM_107 NT_187403.1 +HSCHRUN_RANDOM_111 NT_187407.1 +HSCHRUN_RANDOM_105 NT_187401.1 +HSCHRUN_RANDOM_104 NT_187400.1 +HSCHRUN_RANDOM_167 NT_187459.1 +HSCHRUN_RANDOM_166 NT_187458.1 +HSCHRUN_RANDOM_169 NT_187461.1 +HSCHRUN_RANDOM_168 NT_187460.1 +HSCHRUN_RANDOM_170 NT_187462.1 +HSCHRUN_RANDOM_173 NT_187465.1 +HSCHRUN_RANDOM_174 NT_187466.1 +HSCHRUN_RANDOM_171 NT_187463.1 +HSCHRUN_RANDOM_172 NT_187464.1 +HSCHRUN_RANDOM_177 NT_187469.1 +HSCHRUN_RANDOM_175 NT_187467.1 +HSCHRUN_RANDOM_176 NT_187468.1 +HSCHRUN_RANDOM_178 NT_187470.1 +HSCHRUN_RANDOM_202 NT_187494.1 +HSCHRUN_RANDOM_199 NT_187491.1 +HSCHRUN_RANDOM_200 NT_187492.1 +HSCHRUN_RANDOM_198 NT_187490.1 +HSCHRUN_RANDOM_201 NT_187493.1 +HSCHRUN_RANDOM_197 NT_187489.1 +HSCHRUN_RANDOM_179 NT_187471.1 +HSCHRUN_RANDOM_180 NT_187472.1 +HSCHRUN_RANDOM_194 NT_187486.1 +HSCHRUN_RANDOM_196 NT_187488.1 +HSCHRUN_RANDOM_190 NT_187482.1 +HSCHRUN_RANDOM_192 NT_187484.1 +HSCHRUN_RANDOM_195 NT_187487.1 +HSCHRUN_RANDOM_188 NT_187480.1 +HSCHRUN_RANDOM_183 NT_187475.1 +HSCHRUN_RANDOM_186 NT_187478.1 +HSCHRUN_RANDOM_181 NT_187473.1 +HSCHRUN_RANDOM_182 NT_187474.1 +HSCHRUN_RANDOM_189 NT_187481.1 +HSCHRUN_RANDOM_193 NT_187485.1 +HSCHRUN_RANDOM_191 NT_187483.1 +HSCHRUN_RANDOM_187 NT_187479.1 +HSCHRUN_RANDOM_184 NT_187476.1 +HSCHRUN_RANDOM_185 NT_187477.1 +HSCHRUN_RANDOM_113 NT_187409.1 +HSCHRUN_RANDOM_112 NT_187408.1 +HSCHRUN_RANDOM_114 NT_187410.1 +HSCHRUN_RANDOM_119 NT_187415.1 +HSCHRUN_RANDOM_116 NT_187412.1 +HSCHRUN_RANDOM_115 NT_187411.1 +HSCHRUN_RANDOM_117 NT_187413.1 +HSCHRUN_RANDOM_120 NT_187416.1 +HSCHRUN_RANDOM_121 NT_187417.1 +HSCHRUN_RANDOM_118 NT_187414.1 +HSCHRUN_RANDOM_122 NT_187418.1 +HSCHRUN_RANDOM_123 NT_187419.1 +HSCHRUN_RANDOM_128 NT_187424.1 +HSCHRUN_RANDOM_129 NT_187425.1 +HSCHRUN_RANDOM_124 NT_187420.1 +HSCHRUN_RANDOM_203 NT_187495.1 +HSCHRUN_RANDOM_126 NT_187422.1 +HSCHRUN_RANDOM_125 NT_187421.1 +HSCHRUN_RANDOM_127 NT_187423.1 +HSCHRUN_RANDOM_130 NT_187426.1 +HSCHRUN_RANDOM_141 NT_187437.1 +HSCHRUN_RANDOM_134 NT_187430.1 +HSCHRUN_RANDOM_132 NT_187428.1 +HSCHRUN_RANDOM_131 NT_187427.1 +HSCHRUN_RANDOM_139 NT_187435.1 +HSCHRUN_RANDOM_136 NT_187432.1 +HSCHRUN_RANDOM_140 NT_187436.1 +HSCHRUN_RANDOM_135 NT_187431.1 +HSCHRUN_RANDOM_142 NT_187438.1 +HSCHRUN_RANDOM_133 NT_187429.1 +HSCHRUN_RANDOM_137 NT_187433.1 +HSCHRUN_RANDOM_204 NT_187496.1 +HSCHRUN_RANDOM_138 NT_187434.1 +HSCHRUN_RANDOM_144 NT_187440.1 +HSCHRUN_RANDOM_143 NT_187439.1 +HSCHRUN_RANDOM_145 NT_187441.1 +HSCHRUN_RANDOM_147 NT_187443.1 +HSCHRUN_RANDOM_146 NT_187442.1 +HSCHRUN_RANDOM_148 NT_187444.1 +HSCHRUN_RANDOM_149 NT_187445.1 +HSCHRUN_RANDOM_158 NT_187450.1 +HSCHRUN_RANDOM_156 NT_187448.1 +HSCHRUN_RANDOM_157 NT_187449.1 +HSCHRUN_RANDOM_162 NT_187454.1 +HSCHRUN_RANDOM_154 NT_187446.1 +HSCHRUN_RANDOM_161 NT_187453.1 +HSCHRUN_RANDOM_155 NT_187447.1 +HSCHRUN_RANDOM_163 NT_187455.1 +HSCHRUN_RANDOM_159 NT_187451.1 +HSCHRUN_RANDOM_160 NT_187452.1 +HSCHRUN_RANDOM_165 NT_187457.1 +HSCHRUN_RANDOM_164 NT_187456.1 +HSCHRUN_RANDOM_CTG17 NT_187497.1 +HSCHRUN_RANDOM_CTG42 NT_187513.1 +HSCHRUN_RANDOM_CTG20 NT_187498.1 +HSCHRUN_RANDOM_CTG21 NT_187499.1 +HSCHRUN_RANDOM_CTG22 NT_187500.1 +HSCHRUN_RANDOM_CTG23 NT_187501.1 +HSCHRUN_RANDOM_CTG24 NT_187502.1 +HSCHRUN_RANDOM_CTG25 NT_187503.1 +HSCHRUN_RANDOM_CTG26 NT_187504.1 +HSCHRUN_RANDOM_CTG27 NT_187505.1 +HSCHRUN_RANDOM_CTG28 NT_187506.1 +HSCHRUN_RANDOM_CTG29 na +HSCHRUN_RANDOM_CTG30 NT_187508.1 +HSCHRUN_RANDOM_CTG33 NT_187509.1 +HSCHRUN_RANDOM_CTG34 NT_187510.1 +HSCHRUN_RANDOM_CTG35 NT_187511.1 +HSCHRUN_RANDOM_CTG36 NT_187512.1 +HG986_PATCH NW_009646194.1 +HG2058_PATCH NW_009646195.1 +HG2104_PATCH NW_009646196.1 +HG1832_PATCH NW_011332687.1 +HG2095_PATCH NW_011332688.1 +HG1342_HG2282_PATCH NW_012132914.1 +HG2002_PATCH NW_018654708.1 +HG460_PATCH NW_019805487.1 +HG1343_HG173_HG459_PATCH NW_025791756.1 +HG2571_PATCH NW_025791757.1 +HG2515_PATCH NW_025791758.1 +HG2577_PATCH NW_025791759.1 +HSCHR1_3_CTG3 NW_014040925.1 +HSCHR1_4_CTG3 NW_014040926.1 +HSCHR1_5_CTG32_1 NW_014040927.1 +HSCHR1_5_CTG3 NW_015495298.1 +HSCHR1_6_CTG3 NW_017852928.1 +HSCHR1_8_CTG3 NW_018654706.1 +HSCHR1_9_CTG3 NW_018654707.1 +HSCHR1_12_CTG3 NW_025791753.1 +HSCHR1_5_CTG31 NW_025791754.1 +HSCHR1_6_CTG31 NW_025791755.1 +HG2233_PATCH NW_011332689.1 +HG2232_PATCH NW_011332690.1 +HG2290_PATCH NW_012132915.1 +HG721_PATCH NW_021159987.1 +HG1384_PATCH NW_021159988.1 +HG2494_PATCH NW_025791764.1 +HG2275_PATCH NW_025791765.1 +HG2052_PATCH NW_025791766.1 +HG2231_HG2496_PATCH NW_025791767.1 +HG2140_PATCH NW_025791768.1 +HSCHR2_6_CTG7_2 NW_015495299.1 +HSCHR2_7_CTG7_2 NW_018654709.1 +HSCHR2_8_CTG7_2 NW_018654710.1 +HSCHR2_10_CTG7_2 NW_025791760.1 +HSCHR2_11_CTG7_2 NW_025791761.1 +HSCHR2_12_CTG7_2 NW_025791762.1 +HSCHR2_6_CTG1 NW_025791763.1 +HG2066_PATCH NW_009646197.1 +HG2022_PATCH NW_009646198.1 +HG126_PATCH NW_011332691.1 +HG2235_PATCH NW_012132916.1 +HG2237_PATCH NW_012132917.1 +HG2236_PATCH NW_017363813.1 +HG2133_PATCH NW_019805491.1 +HG2264_PATCH NW_025791769.1 +HG2077_PATCH NW_025791770.1 +HG2069_PATCH NW_025791771.1 +HSCHR3_4_CTG1 NW_018654711.1 +HSCHR3_7_CTG2_1 NW_019805488.1 +HSCHR3_8_CTG2_1 NW_019805489.1 +HSCHR3_9_CTG2_1 NW_019805490.1 +HSCHR3_6_CTG2_1 NW_019805492.1 +HSCHR3_5_CTG1 NW_021159989.1 +HG2023_PATCH NW_015495300.1 +HG699_PATCH NW_021159990.1 +HG2525_PATCH NW_021159991.1 +HG1299_PATCH NW_021159992.1 +HG1298_PATCH NW_021159993.1 +HG1296_PATCH NW_021159994.1 +HG705_PATCH NW_021159995.1 +HG2155_PATCH NW_025791773.1 +HG287_PATCH NW_025791774.1 +HSCHR4_2_CTG4 NW_013171799.1 +HSCHR4_8_CTG12 NW_013171800.1 +HSCHR4_9_CTG12 NW_013171801.1 +HSCHR4_11_CTG12 NW_015495301.1 +HSCHR4_12_CTG12 NW_017363814.1 +HSCHR4_2_CTG8_1 NW_025791772.1 +HG30_PATCH NW_016107298.1 +HG1395_PATCH NW_021159996.1 +HG1046_PATCH NW_025791775.1 +HG2476_PATCH NW_025791776.1 +HG2405_PATCH NW_025791777.1 +HG2308_PATCH NW_025791778.1 +HSCHR5_7_CTG1 NW_009646199.1 +HSCHR5_8_CTG1 NW_016107297.1 +HSCHR5_9_CTG1 NW_018654712.1 +HSCHR5_10_CTG1 NW_025791779.1 +HG2128_PATCH NW_009646200.1 +HG1651_PATCH NW_012132918.1 +HG2072_PATCH NW_013171802.1 +HG2121_PATCH NW_017363815.1 +HG2057_PATCH NW_018654713.1 +HG563_PATCH NW_021159997.1 +HSCHR6_1_CTG10 NW_013171803.1 +HSCHR6_1_CTG1 NW_025791780.1 +HG2239_PATCH NW_012132919.1 +HG2088_PATCH NW_017852929.1 +HG2266_PATCH NW_017852930.1 +HG708_PATCH NW_018654714.1 +HG1309_PATCH NW_021159998.1 +HSCHR7_3_CTG4_4 NW_018654715.1 +HSCHR7_3_CTG1 NW_019805493.1 +HSCHR7_4_CTG1 NW_025791781.1 +HG2067_PATCH NW_017852931.1 +HG2068_PATCH NW_017852932.1 +HG2419_PATCH NW_018654716.1 +HG76_PATCH NW_018654717.1 +HG2176_PATCH NW_025791782.1 +HG1047_PATCH NW_025791783.1 +HG2408_PATCH NW_025791784.1 +HG2267_PATCH NW_025791785.1 +HG2031_PATCH NW_025791786.1 +HSCHR8_7_CTG7 NW_019805494.1 +HG2030_PATCH NW_009646201.1 +HG613_PATCH NW_021159999.1 +HG2158_PATCH NW_025791787.1 +HG1012_PATCH NW_025791788.1 +HG1206_PATCH NW_025791789.1 +HSCHR9_1_CTG6 NW_013171804.1 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Mapping file: +# Download the mapping file from: +# wget "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.40_GRCh38.p14/GCF_000001405.40_GRCh38.p14_assembly_report.txt" +# +# Then cut the relevant columns: +# cut -f 1,7 GCF_000001405.40_GRCh38.p14_assembly_report.txt | grep -v "^#" | tee chr2id.txt + + +# Load the mapping file (assuming it's a TSV or space-separated file) +mapping_file = "chr2id.txt" +chrid2name = {} +with open(mapping_file) as f: + for l in f.readlines(): + chr_name, chr_id = l.strip().split("\t") + chrid2name[chr_id] = chr_name + + +# Example: Translating IDs in a VCF file +vcf_file = "GCF_000001405.38.vcf" +with open(vcf_file, 'r') as file: + for line in file: + if not line.startswith("#"): # Skip header lines + columns = line.strip().split('\t') + if columns[0] in chrid2name: + columns[0] = chrid2name[columns[0]] # Replace chromosome ID + print('\t'.join(columns)) # Print or write to a new file + else: + print(line.strip()) # Print header lines as is diff --git a/scripts_build/pdbCompoundLines.py b/scripts_build/pdb/pdbCompoundLines.py similarity index 100% rename from scripts_build/pdbCompoundLines.py rename to scripts_build/pdb/pdbCompoundLines.py diff --git a/scripts_build/pdbCompoundLines.sh b/scripts_build/pdb/pdbCompoundLines.sh similarity index 100% rename from scripts_build/pdbCompoundLines.sh rename to scripts_build/pdb/pdbCompoundLines.sh diff --git a/spliceSites/u12_branch.pwm b/spliceSites/u12_branch.pwm deleted file mode 100644 index 322cd099a..000000000 --- a/spliceSites/u12_branch.pwm +++ /dev/null @@ -1,14 +0,0 @@ - 33 -72 29 -3 - -58 -61 3 53 - -55 -59 -2 53 - -70 -79 -52 76 - -138 -121 -150 109 - -410 190 -496 -173 - -690 197 -654 -224 - -491 -301 -654 146 - -491 -433 -274 145 - 159 -359 39 -316 - 197 -491 -154 -468 - -345 173 -337 -93 - -4 -19 -71 38 -