ModuleNotFoundError: No module named 'colabfold' in AlphaFold2+MD.ipynb

[madsondeluna]

Hey, there!

While running the Run Prediction section in the AlphaFold2+MD.ipynb notebook on Google Colab, I encountered an issue where the colabfold module couldn't be found. The error message was:

---------------------------------------------------------------------------
ModuleNotFoundError                       Traceback (most recent call last)
[<ipython-input-12-7bd7350f83da>](https://localhost:8080/#) in <cell line: 0>()
      8 warnings.simplefilter(action='ignore', category=BiopythonDeprecationWarning)
      9 from pathlib import Path
---> 10 from colabfold.download import download_alphafold_params, default_data_dir
     11 from colabfold.utils import setup_logging
     12 from colabfold.batch import get_queries, run, set_model_type

ModuleNotFoundError: No module named 'colabfold'
---------------------------------------------------------------------------

This happens when trying to import download_alphafold_params and default_data_dir from colabfold.download, along with other functions from the same package. It seems like colabfold is either not installed or not accessible in the current environment.

I'm running this on Google Colab and have followed all previous steps in the notebook. Could this be related to the environment setup or a recent update? If there's a specific step needed to ensure colabfold is available, I'd really appreciate any guidance. Thank you!

[pablo-arantes]

Hi Madson,

Thank you for letting me know about the issue. It appears this might be a recent update on ColabFold. I will check the code and get back to you shortly.

Best regards,

Pablo