Windows ssh tests activated #18
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| name: Test | |
| on: | |
| pull_request: | |
| push: | |
| branches-ignore: | |
| - "pre-commit-ci*" | |
| concurrency: | |
| group: >- | |
| ${{ github.workflow }}- | |
| ${{ github.ref_type }}- | |
| ${{ github.event.pull_request.number || github.sha }} | |
| cancel-in-progress: true | |
| env: | |
| # UTF-8 content may be interpreted as ascii and causes errors without this. | |
| LANG: C.UTF-8 | |
| IPP_DISABLE_JS: "1" | |
| JUPYTER_PLATFORM_DIRS: "1" | |
| GITHUB_RUNNER: "1" # this will disable the ssh test on windows | |
| jobs: | |
| test: | |
| runs-on: ${{ matrix.runs_on || 'ubuntu-20.04' }} | |
| timeout-minutes: 20 | |
| strategy: | |
| # Keep running even if one variation of the job fail | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - python: "3.9" | |
| cluster_type: ssh | |
| - python: "3.8" | |
| cluster_type: mpi | |
| - python: "3.10" | |
| cluster_type: slurm | |
| container: slurmctld | |
| - python: "3.8" | |
| - python: "3.10" | |
| env: | |
| IPP_CONTROLLER_IP: "*" | |
| - python: "3.9" | |
| env: | |
| IPP_ENABLE_CURVE: "1" | |
| - python: "3.8" | |
| cluster_type: ssh | |
| runs_on: windows-2019 | |
| - python: "3.9" | |
| runs_on: macos-11 | |
| - python: "3.11" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Cache conda environment | |
| uses: actions/cache@v3 | |
| with: | |
| path: | | |
| ~/conda | |
| key: conda | |
| - name: Cache node_modules | |
| uses: actions/cache@v3 | |
| with: | |
| path: | | |
| node_modules | |
| key: ${{ runner.os }}-yarn-${{ hashFiles('yarn.lock') }} | |
| restore-keys: | | |
| ${{ runner.os }}-yarn- | |
| - name: Set environment variables | |
| if: ${{ matrix.env }} | |
| env: | |
| MATRIX_ENV: ${{ toJSON(matrix.env) }} | |
| run: | | |
| python3 <<EOF | |
| import json | |
| import os | |
| matrix_env = json.loads(os.environ["MATRIX_ENV"]) | |
| with open(os.environ["GITHUB_ENV"], "a") as f: | |
| for key, value in matrix_env.items(): | |
| f.write(f"{key}={value}\n") | |
| EOF | |
| - name: Set up docker-compose for ssh linux launcher | |
| if: ${{ matrix.cluster_type == 'ssh' && !contains(matrix.runs_on, 'windows') }} | |
| run: | | |
| export DOCKER_BUILDKIT=1 | |
| export COMPOSE_DOCKER_CLI_BUILD=1 | |
| cd ci/ssh | |
| docker-compose -f linux_docker-compose.yaml up -d --build | |
| # retrieve id_rsa file for public key authentication | |
| mkdir ~/.ssh/ | |
| docker cp ssh_sshd_1:/home/ciuser/.ssh/id_rsa ~/.ssh/id_rsa | |
| cat ~/.ssh/id_rsa | |
| #check ssh connection and accept host key (with an arbitrary linux command) | |
| ssh -o "StrictHostKeyChecking no" ciuser@127.0.0.1 -p 2222 -v echo "ssh connection to container succeeded" | |
| - name: Set up docker-compose for ssh windows launcher | |
| if: ${{ matrix.cluster_type == 'ssh' && contains(matrix.runs_on, 'windows') }} | |
| env: | |
| SSH_HOST: ciuser@127.0.0.1 | |
| SSH_PORT: 2222 | |
| CODE_ROOT: c:\src\ipyparallel | |
| run: | | |
| cd ci/ssh | |
| # determine host ip and place it as 'static' env variables in corresponding docker compose file (win_Dockerfile_template -> win_Dockerfile) | |
| $env:docker_host_ip=(Get-NetIPConfiguration -InterfaceAlias "Ethernet*").IPv4Address.IPAddress.Trim() | |
| $content = Get-Content "win_Dockerfile_template" | |
| $content | ForEach-Object { | |
| $_ -replace '\${docker_host_ip}', $env:docker_host_ip -replace '\${docker_host_name}', $env:computername | |
| } | Set-Content "win_Dockerfile" | |
| docker-compose -f win_docker-compose.yaml up -d --build | |
| # retrieve id_rsa file for public key authentication | |
| mkdir $env:USERPROFILE/.ssh/ | |
| docker run ipyparallel-sshd powershell.exe -Command "type C:\Users\ciuser\.ssh\id_rsa" | out-file -encoding ascii $env:USERPROFILE/.ssh/id_rsa | |
| # install newer version of openssh (removes "GetConsoleMode on STD_INPUT_HANDLE failed with 6" error in pytest) | |
| choco install openssh --pre | |
| mv C:\Windows\System32\OpenSSH C:\Windows\System32\_OpenSSH | |
| #check ssh connection and accept host key (with arbitrary windows command) | |
| ssh -o "StrictHostKeyChecking no" $env:SSH_HOST -p $env:SSH_PORT -v echo "ssh connection to container succeeded" | |
| # copy ipyparallel code to docker container (use zip, scp and unzip) | |
| ssh $env:SSH_HOST -p $env:SSH_PORT mkdir $env:CODE_ROOT | |
| # zip ipyparallel files (excluding files probably not needed) | |
| cd ../.. | |
| $exclude = @("__pycache__","node_modules") | |
| $files = Get-ChildItem -Path "." -Exclude $exclude | |
| Compress-Archive -Path $files -DestinationPath ipyparallel.zip -CompressionLevel Fastest | |
| # copy file into docker (we need to do it over ssh since docker copy or mount doesn't work in Hyper-V) | |
| scp -P $env:SSH_PORT ipyparallel.zip ${env:SSH_HOST}:${env:CODE_ROOT} | |
| # deflate ipyparallel files | |
| ssh $env:SSH_HOST -p $env:SSH_PORT powershell.exe -Command "Expand-Archive -Path $env:CODE_ROOT\ipyparallel.zip -DestinationPath $env:CODE_ROOT" | |
| # pip install ipyparallel files | |
| #ssh $env:SSH_HOST -p $env:SSH_PORT "cd $env:CODE_ROOT && pip install -e ." | |
| ssh $env:SSH_HOST -p $env:SSH_PORT "pip install -e file://c:/src/ipyparallel#egg=ipyparallel[test]" | |
| # we need to disable the windows firewall for github runners otherwise the ipyparallel engines cannot connect to the controller. | |
| # obviously, a more precautious adaption of the firewall would be desirable. since an adaption of the firewall is NOT necessary | |
| # for a local standard windows environment, no further improvements were made. | |
| echo "Disable Firewall:" | |
| Set-NetFirewallProfile -Profile Domain, Public, Private -Enabled False | |
| echo "Check if container can ping the docker host (requires adapted hosts file and firewall disabled)" | |
| docker run ipyparallel-sshd ping -n 1 $env:computername | |
| - name: Set up slurm | |
| if: ${{ matrix.cluster_type == 'slurm' }} | |
| run: | | |
| export DOCKER_BUILDKIT=1 | |
| export COMPOSE_DOCKER_CLI_BUILD=1 | |
| cd ci/slurm | |
| docker-compose up -d --build | |
| - name: Install Python (conda) ${{ matrix.python }} | |
| if: ${{ matrix.cluster_type == 'mpi' }} | |
| run: | | |
| export MAMBA_ROOT_PREFIX=$HOME/conda | |
| test -d $MAMBA_ROOT_PREFIX || mkdir $MAMBA_ROOT_PREFIX | |
| wget -qO- https://micro.mamba.pm/api/micromamba/linux-64/latest | tar -xvj bin/micromamba | |
| eval "$(./bin/micromamba shell hook -s posix)" | |
| micromamba activate | |
| micromamba install -y -c conda-forge mpich mpi4py python=${{ matrix.python }} | |
| echo "PATH=$MAMBA_ROOT_PREFIX/bin:$PATH" >> $GITHUB_ENV | |
| - name: Install Python ${{ matrix.python }} | |
| if: ${{ matrix.cluster_type != 'mpi' }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: Install ipyparallel itself | |
| run: | | |
| pip install --upgrade pip | |
| pip install --no-deps . | |
| - name: Install Python dependencies | |
| run: | | |
| pip install --pre --upgrade ipyparallel[test] | |
| - name: Install extra Python packages | |
| if: ${{ ! startsWith(matrix.python, '3.11') }} | |
| run: | | |
| pip install distributed joblib | |
| # pip install --only-binary :all: matplotlib || echo "no matplotlib"# | |
| # the || syntax doesn't work under windows powershell, but since the command (currently) works for all | |
| # python version (3.8-3.10), the "||" branch can be simply removed. Otherwise we would need a splitted | |
| # step for Windows and Linux (as for the docker-compose command) | |
| pip install --only-binary :all: matplotlib | |
| - name: Show environment | |
| run: pip freeze | |
| - name: Run tests in container ${{ matrix.container }} | |
| if: ${{ matrix.container }} | |
| run: echo "EXEC=docker exec -i ${{ matrix.container }}" >> $GITHUB_ENV | |
| - name: Run ${{ matrix.cluster_type }} tests | |
| if: ${{ matrix.cluster_type }} | |
| run: | | |
| ${EXEC:-} pytest -v --maxfail=2 --cov=ipyparallel ipyparallel/tests/test_${{ matrix.cluster_type }}.py | |
| - name: Run tests | |
| if: ${{ ! matrix.cluster_type }} | |
| run: | | |
| pytest -v --maxfail=3 --cov=ipyparallel | |
| - name: Fixup coverage permissions ${{ matrix.container }} | |
| if: ${{ matrix.container }} | |
| run: | | |
| ls -l .coverage* | |
| ${EXEC} chmod -R a+rw .coverage* | |
| - name: Submit codecov report | |
| uses: codecov/codecov-action@v3 | |
| - name: Report on slurm | |
| if: ${{ matrix.cluster_type == 'slurm' && failure() }} | |
| run: | | |
| set -x | |
| docker ps -a | |
| docker logs slurmctld | |
| docker exec -i slurmctld squeue --states=all | |
| docker exec -i slurmctld sinfo | |
| docker logs c1 | |
| docker logs c2 |