zbmed-semtec

All

35 repositories

zbmed-semtec.github.io
Public
GitHub pages for the Semantic Technologies team at ZB MED
Python
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MIT License
•1•0•0•0•Updated Jan 24, 2025Jan 24, 2025
doc2vec-doc-relevance
Public
An approach exploring and assessing literature-based doc-2-doc recommendations using a doc2vec and applying to the RELISH dataset.
python document-similarity document-embeddings phase-one ontoclue doc2doc-relevance
Python
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GNU General Public License v3.0
•0•0•0•0•Updated Jan 23, 2025Jan 23, 2025
wmd-word2vec
Public
An approach exploring and assessing literature-based doc-2-doc recommendations using word2vec and word mover's distance and applying it to RELISH dataset.
python word-embeddings document-similarity phase-one word-movers-distance ontoclue doc2doc-relevance
Python
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GNU General Public License v3.0
•0•0•0•0•Updated Jan 23, 2025Jan 23, 2025
mlentory-etl-pipeline
Public
This repository aims at exploring APIs from different ML-related platforms so we can harvest and harmonize data from them
Jupyter Notebook
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GNU General Public License v3.0
•1•3•15•4•Updated Jan 23, 2025Jan 23, 2025
ontoclue_docker
Public
This repository contains the code for the Docker version of the OntoClue Project.
docker ontoclue
Python
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GNU General Public License v3.0
•0•0•0•0•Updated Jan 23, 2025Jan 23, 2025
specifications
Public
Issue tracker, technical wiki, and example markup
HTML
•52•0•0•0•Updated Jan 10, 2025Jan 10, 2025
mock_rec_experiment
Public
Python
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GNU General Public License v3.0
•0•0•0•0•Updated Jan 7, 2025Jan 7, 2025
mock_rec_base
Public
Python
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GNU General Public License v3.0
•0•0•0•0•Updated Jan 7, 2025Jan 7, 2025
bioschemas.github.io
Public
Files for the Bioschemas website.
HTML
•72•0•0•1•Updated Dec 11, 2024Dec 11, 2024
bioschemas-dde
Public
scripts for automated maintenance of bioschemas specifications in the Data Discovery Engine
Jupyter Notebook
•4•0•0•0•Updated Nov 19, 2024Nov 19, 2024
relish-preprocessing
Public
ontoclue
Python
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GNU General Public License v3.0
•0•0•0•0•Updated Nov 17, 2024Nov 17, 2024
bheu24-cm4mlds
Public
BioHackathon Europe 2024 repository to explore Croissant ML metadata extraction from HuggingFace
Jupyter Notebook
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GNU General Public License v3.0
•1•3•0•0•Updated Nov 7, 2024Nov 7, 2024
mini_hackathon_AskOrkg
Public
A repository for testing different technologies related to information retrieval inspired in the AskORKG project.
Python
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GNU General Public License v3.0
•0•0•0•0•Updated Oct 22, 2024Oct 22, 2024
word2doc2vec-doc-relevance
Public
An approach exploring and assessing literature-based doc-2-doc recommendations using word2vec combined with doc2vec, and applying it to TREC and RELISH datasets
python word-embeddings document-similarity document-embeddings phase-one ontoclue doc2doc-relevance
Python
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GNU General Public License v3.0
•0•0•0•1•Updated Sep 30, 2024Sep 30, 2024
bioschemas-ghpages-markup-tutorial
Public
A tutorial on how to add Bioschemas markup to GitHub pages
Other
•13•1•0•0•Updated Sep 20, 2024Sep 20, 2024
deleteme
Public
A dummy repo to try out good practices changes and effects in metadata
0•0•0•0•Updated Sep 19, 2024Sep 19, 2024
somef-fork
Public
Use of SOftware Metadata Extraction Framework (SOMEF) for the use case of Software Management Plans
Jupyter Notebook
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MIT License
•24•0•0•1•Updated Sep 3, 2024Sep 3, 2024
in-silico-protocols-4ML
Public
Semantically enriched in-silico protocols for ML experiments to improve FAIRness, transparency and reproducibility
Other
•0•0•0•0•Updated Aug 29, 2024Aug 29, 2024
maSMPs
Public
Metadata model for machine-actionable Software Management Plans
metadata vocabulary smp schemaorg bioschemas
Jupyter Notebook
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Other
•2•3•2•0•Updated Aug 28, 2024Aug 28, 2024
KGE_literature_relevance_assessment
Public
Lukas Thesis project for a KGE approach on OntoClue
Python
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GNU General Public License v3.0
•0•0•0•0•Updated Jul 24, 2024Jul 24, 2024
m4ml
Public
A data repository to save ML-related metadata crosswalks
Other
•2•5•1•0•Updated Jul 9, 2024Jul 9, 2024
mock_recommendation_system
Public
Python
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GNU General Public License v3.0
•0•0•1•0•Updated May 28, 2024May 28, 2024
hybrid-pre-doc2vec-doc-relevance
Public
Hybrid approach combining dictionary-based NER and doc2vec
python ner document-similarity document-embeddings phase-one ontoclue doc2doc-relevance
Jupyter Notebook
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GNU General Public License v3.0
•0•0•5•0•Updated Apr 10, 2024Apr 10, 2024
w3id.org
Public
Website source code for w3id.org.
HTML
•1.3k•0•0•0•Updated Apr 8, 2024Apr 8, 2024
FAIRification-game-4RS-data
Public
This repository is used to mock research software repositories (via folders) used in the "FAIRification game for Research Software".
Python
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Other
•0•0•0•0•Updated Nov 7, 2023Nov 7, 2023
protein-function-embeddings-thesis
Public
thesis word-embeddings document-embeddings protein-function
Python
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GNU General Public License v3.0
•0•0•0•0•Updated Aug 17, 2023Aug 17, 2023
mowl-graph2doc2vec
Public
A repository to explore the use of ontology-based graphs (generated with MOWL) as background knowledge for scientific publications.
Jupyter Notebook
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GNU General Public License v3.0
•4•0•0•0•Updated Apr 1, 2023Apr 1, 2023
TREC-doc-2-doc-relevance
Public
doc-2-doc relevance assessment on PMIDs used in the TREC 2005 Genomics track
trec end-user-interface doc2doc-relevance manual-annotation
Jupyter Notebook
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MIT License
•0•0•1•0•Updated Nov 21, 2022Nov 21, 2022
topic-categorization-system
Public
Topic categorization on scientific papers to improve information retrieval in the biomedical domain.
thesis topic-categorization mesh-vocabulary
Jupyter Notebook
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GNU General Public License v3.0
•0•0•2•0•Updated Nov 13, 2022Nov 13, 2022
dome-galaxy-training
Public
Training materials about the DOME recommendations with a Galaxy tutorial as use case
HTML
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Other
•0•0•0•0•Updated Jun 1, 2022Jun 1, 2022