Repositories list

• PSM-Work-Mapping

  Public
  Patient-specific modeling assessment of myocardial work with simple and robust clinical datasets

  MATLAB

  •0•1•0•0•Updated Nov 14, 2024Nov 14, 2024

• fcrl-filt-back-proj

  Public
  Filtered backprojection in python without explicit use of Radon transform functions

  Python

  •10•0•0•0•Updated Nov 10, 2023Nov 10, 2023

• rv-rmwct-study

  Public
  Data and analysis scripts for MWCT paper

  MATLAB

  •0•0•0•0•Updated Nov 6, 2023Nov 6, 2023

• .github

  Public
  0•0•0•0•Updated Feb 21, 2023Feb 21, 2023

• DL_CT_GLS_Final

  Public
  Code used to measure GLS from long-axis segmentations

  MATLAB

  •0•0•0•0•Updated Oct 21, 2022Oct 21, 2022

• UNet_image_to_image

  Public
  A image-to-image UNet, tensorflow 2.4.1

  tensorflowunetunet-keras

  Python

  •0•0•0•0•Updated Oct 14, 2022Oct 14, 2022

• DL_WMA_by_VR_Final_v_ZC

  Public
  A deep learning pipeline to detect Left Ventricle Wall Motion Abnormality from volume-rendered 4DCT data. Author: Zhennong Chen, PhD

  deep-learningtensorflowvolume-rendering+ 4computed-tomographyrecurrent-neural-networkleft-ventriclewall-motion-abnormality

  MATLAB

  •0•2•0•0•Updated Aug 5, 2022Aug 5, 2022

• 2DUNet_CT_Seg_Final_v_ZC

  Public
  a 2D U-Net pipeline to segment heart chambers in CT 3D volumes. Author: Zhennong Chen, PhD.

  deep-learningsegmentationcomputed-tomography+ 2u-netheart-chamber

  Python

  •0•2•0•0•Updated Jun 23, 2022Jun 23, 2022

• NeuralCT_new_seg_Final_v_ZC

  Public
  An implicit neural representation framework to correct motion artifacts from CT. Author: Zhennong Chen, PhD

  pytorchcomputed-tomographydifferentiable-rendering+ 2motion-artifactimplicit-neural-representation

  Jupyter Notebook

  •0•1•0•0•Updated Jun 17, 2022Jun 17, 2022

• DL_CT_Seg-Plane_Prediction_Final_v_ZC

  Public
  Use trained deep learning (DL) model (modified 3D U-Net) to predict chamber segmentation and cardiac imaging planes on new cases. Author: Zhennong Chen, PhD

  tensorflowimage-segmentationcomputed-tomography+ 4u-netheart-chamberplane-predictiondeep-learning

  Python

  •0•0•0•0•Updated Jun 15, 2022Jun 15, 2022

• AI_chamber_segmentation_plane_re-slicing

  Public
  A deep learning (DL) pipeline to simultaneously predict multi-chamber segmentation and all cardiac imaging planes. Author: Zhennong Chen, PhD

  image-segmentationcomputed-tomographyu-net+ 4heart-chamberplane-predictiondeep-learningtensorflow

  Python

  •0•3•0•0•Updated May 24, 2022May 24, 2022

• BaseDockerImages

  Public
  Base Docker Images build on top of NVIDIA CUDA XX.X and includes anaconda, other useful packages.

  Dockerfile

  •1•0•0•0•Updated Sep 24, 2021Sep 24, 2021

• med-img-octnet-adaptation

  Public
  Adaptation of OctNet for use in Medical Images

  C++

  •

  Other

  •104•1•0•0•Updated Sep 15, 2021Sep 15, 2021

• hexblender

  Public
  A Blender addon that allows for working with hexahedral elements

  Python

  •1•0•0•0•Updated Jul 7, 2021Jul 7, 2021

• unet_deploy

  Public
  Python

  •1•0•0•0•Updated Jun 29, 2021Jun 29, 2021

• autoseg_deploy

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Mar 29, 2021Mar 29, 2021

• Pytorch-UNet

  Public
  PyTorch implementation of the U-Net for image semantic segmentation with high quality images

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •2.6k•0•0•0•Updated Dec 22, 2020Dec 22, 2020

• CatSim

  Public
  Simulation and Reconstruction Package

  C++

  •24•0•0•0•Updated Sep 30, 2020Sep 30, 2020

• dv-commandline-utils

  Public
  C++

  •2•0•0•0•Updated Sep 29, 2020Sep 29, 2020

• dvpy

  Public
  Python

  •6•0•0•0•Updated Jul 2, 2019Jul 2, 2019