Repositories list

• 2DanalysisTutorials

  Public
  Collection of tutorials and examples of the novel MDanalysis library 2Danalysis, for biophysical systems

  Jupyter Notebook

  •1•1•0•0•Updated Feb 14, 2025Feb 14, 2025

• Comp-Nucleic-Acids-Nanostructures

  Public
  Collection of scripts to build NA based nanostructures

  C

  •0•0•0•0•Updated Feb 3, 2025Feb 3, 2025

• afm_md_dmd

  Public
  Jupyter Notebook

  •2•0•0•0•Updated Dec 18, 2024Dec 18, 2024

• pyDAMPF

  Public
  pyDAMPF: a Python package for modeling mechanical properties of hygroscopic materials under interaction with a nanoprobe

  Jupyter Notebook

  •3•0•0•0•Updated Nov 8, 2024Nov 8, 2024

• ML4molecularSims

  Public
  Collection of Tutorials and Solution of exercises for ML algorithms employed in Molecular Simulation. The Tutorials are aimed to reach multiple backgrounds in bio and material science.

  Jupyter Notebook

  •

  MIT License

  •0•0•0•1•Updated Nov 5, 2024Nov 5, 2024

• prototype_notebooks

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Oct 17, 2023Oct 17, 2023

• eTipVirusForce

  Public
  Analysis and Data of the Ms. entitled: Quantitative electrostatic force tomography for virus capsids in interaction with an approaching nanoscale probe.

  Jupyter Notebook

  •1•1•0•0•Updated Jul 4, 2022Jul 4, 2022

• rna_md_minimization

  Public
  Energy minimization for backmapped RNA structures

  Shell

  •0•0•0•0•Updated Jul 22, 2020Jul 22, 2020

• Notebooks_phase1

  Public
  A collection of Jupyter notebooks used to interact between molecular and continuum scale simulations

  Jupyter Notebook

  •2•1•0•0•Updated Jul 9, 2020Jul 9, 2020

• bem_electrostatics

  Public
  Python

  •2•0•0•0•Updated May 24, 2020May 24, 2020