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@pathogen-genomics UCSC Pathogen Genomics

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    5 repositories

    • cdph-rsv

      Public
      Scripts and files for processing RSV fastq files
      Shell
      •0•0•0•0•Updated Jun 17, 2024Jun 17, 2024

    • introduction-website

      Public
      Code for a webpage displaying introductions and resulting clusters of coronavirus across the USA. Customized for CA Dept. of Public Health.
      JavaScript
      •5•1•1•0•Updated Apr 18, 2024Apr 18, 2024

    • taxonium

      Public
      Explore very large trees in the browser
      JavaScript
      •
      GNU General Public License v3.0
      •21•0•0•0•Updated Jan 10, 2024Jan 10, 2024

    • integrate-covidnet

      Public
      This repository contains a single WDL Workflow for syncing with Dockstore and then running on the Terra Cloud Computing Platform
      WDL
      •0•0•0•0•Updated Dec 7, 2022Dec 7, 2022

    • usher-public-workflow

      Public
      A Dockstore WDL Workflow that uses UShER to place your consensus.fasta sequences on the SARS-CoV-2 phylogeny
      WDL
      •1•2•0•0•Updated Oct 18, 2021Oct 18, 2021