Open Problems in Single-Cell Analysis

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30 packages

data_processors/transform
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/data_processors/transform

2.14k
metrics/clustering_overlap
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/clustering_overlap

2.14k
metrics/kbet
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/kbet

2.12k
metrics/isolated_label_f1
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/isolated_label_f1

2.09k
metrics/asw_label
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/asw_label

1.89k
metrics/isolated_label_asw
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/isolated_label_asw

1.89k
metrics/graph_connectivity
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/graph_connectivity

1.84k
metrics/lisi
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/lisi

1.83k
metrics/asw_batch
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/asw_batch

1.81k
metrics/pcr
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/pcr

1.8k
metrics/cell_cycle_conservation
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/cell_cycle_conservation

1.75k
data_processors/precompute_clustering_run
Published Jan 10, 2025 by Open Problems in Single-Cell Analysis in task_batch_integration/data_processors/precompute_clustering_run

1.63k
metrics/hvg_overlap
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/hvg_overlap

798
data_processors/precompute_clustering_merge
Published Jan 10, 2025 by Open Problems in Single-Cell Analysis in task_batch_integration/data_processors/precompute_clustering_merge

447
methods/mnnpy
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/mnnpy

238
data_processors/process_dataset
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/data_processors/process_dataset

226
methods/batchelor_mnn_correct
Published Sep 24, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/batchelor_mnn_correct

212
methods/scanorama
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/scanorama

196
methods/pyliger
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/pyliger

193
control_methods/shuffle_integration_by_cell_type
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/control_methods/shuffle_integration_by_cell_type

188
control_methods/shuffle_integration_by_batch
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/control_methods/shuffle_integration_by_batch

187
control_methods/shuffle_integration
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/control_methods/shuffle_integration

184
methods/liger
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/liger

182
methods/combat
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/combat

173
control_methods/embed_cell_types_jittered
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/control_methods/embed_cell_types_jittered

172
methods/scanvi
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/scanvi

170
control_methods/no_integration
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/control_methods/no_integration

170
methods/batchelor_fastmnn
Published Sep 24, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/batchelor_fastmnn

166
control_methods/no_integration_batch
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/control_methods/no_integration_batch

166
methods/bbknn
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/bbknn

164