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    37 repositories

    • luppi-neurosynth-control

      Public
      Code for Luppi et al (2024) Nature Biomedical Engineering
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •2•2•0•0•Updated Feb 2, 2025Feb 2, 2025

    • ceballos_neuropeptide-signaling

      Public
      Repository for the project "Mapping neuropeptide signaling in the human brain"
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•5•0•0•Updated Jan 29, 2025Jan 29, 2025

    • hansen_synaptome

      Public
      Data and code supporting Hansen et al., 2025, bioRxiv "Synaptome architecture shapes regional dynamics in the mouse brain"
      Python
      •0•1•0•0•Updated Jan 28, 2025Jan 28, 2025

    • netneurotools

      Public
      Useful tools from the Network Neuroscience Lab
      pythonneuroimaginghacktoberfestbrain-imagingbrain-networks
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •32•65•7•3•Updated Jan 27, 2025Jan 27, 2025

    • netneurolab.github.io

      Public
      Network Neuroscience Lab Website
      SCSS
      •1.2k•0•0•0•Updated Jan 27, 2025Jan 27, 2025

    • luppi-genes-receptors-macaque

      Public
      MATLAB code for Luppi et al (2024) "Benchmarking macaque brain gene expression for horizontal and vertical translation"
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 23, 2025Jan 23, 2025

    • liu_fc-pyspi

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•0•Updated Jan 16, 2025Jan 16, 2025

    • bazinet_spins

      Public
      Code supporting Bazinet et al., 2024, "The effect of spherical projection on spin tests for brain maps" (bioRxiv)
      Python
      •1•0•0•0•Updated Jan 13, 2025Jan 13, 2025

    • markello_transcriptome

      Public
      Code and documentation supporting Markello et al, 2021, "Standardizing workflows in imaging transcriptomics with the abagen toolbox" (Biorxiv)
      TeX
      •
      BSD 3-Clause "New" or "Revised" License
      •3•6•1•0•Updated Jan 12, 2025Jan 12, 2025

    • markello_ppmisnf

      Public
      Code supporting the recent preprint Markello et al., 2020
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •7•30•2•3•Updated Jan 12, 2025Jan 12, 2025

    • liu_meg-scfc

      Public
      Python
      •1•1•0•0•Updated Jan 12, 2025Jan 12, 2025

    • shafiei_megdynamics

      Public
      Code supporting Shafiei et al., 2023 "Neurophysiological signatures of cortical micro-architecture".
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•6•0•0•Updated Jan 12, 2025Jan 12, 2025

    • shafiei_megfmrimapping

      Public
      Code supporting Shafiei et al., 2022 "Human electromagnetic and haemodynamic networks systematically converge in unimodal cortex and diverge in transmodal cortex".
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•6•0•0•Updated Jan 12, 2025Jan 12, 2025

    • abagen

      Public
      A toolbox for working with Allen Human Brain Atlas microarray expression data
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •42•11•0•0•Updated Jan 12, 2025Jan 12, 2025

    • suarez_neuromorphicnetworks

      Public
      Code supporting Suarez et al., 2021 "Learning function from structure in neuromorphic networks". ()
      Python
      •
      GNU General Public License v3.0
      •14•53•1•0•Updated Jan 12, 2025Jan 12, 2025

    • bazinet_multiscale

      Public
      Code and documentation supporting Bazinet et al., 2020, "Multiscale communication in cortico-cortical networks"
      Python
      •2•1•0•0•Updated Jan 12, 2025Jan 12, 2025

    • marmoset_connectome

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•0•Updated Jan 12, 2025Jan 12, 2025

    • milisav_strength_nulls

      Public
      Data and code supporting Milisav et al., 2024 "A simulated annealing algorithm for randomizing weighted networks"
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•6•0•0•Updated Jan 6, 2025Jan 6, 2025

    • luppi-cognitive-matching

      Public
      MATLAB code for Luppi et al (2025) "General anaesthesia reduces the uniqueness of brain functional connectivity across individuals and across species", Nature Human Behaviour
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 2, 2025Jan 2, 2025

    • conn2res

      Public
      A reservoir computing toolbox for neuroscientists
      pythonreservoircomputingneuroai
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •22•88•2•2•Updated Dec 20, 2024Dec 20, 2024

    • pypyls

      Public
      A Python implementation of Partial Least Squares (PLS) decomposition
      Python
      •
      GNU General Public License v2.0
      •29•62•12•1•Updated Dec 17, 2024Dec 17, 2024

    • neuromaps

      Public
      A toolbox for comparing brain maps
      pythonneuroimaginghacktoberfestbrain-imaging
      Python
      •
      Other
      •57•259•15•7•Updated Dec 13, 2024Dec 13, 2024

    • Farahani_ALS

      Public
      Network spreading and local biological vulnerability in amyotrophic lateral sclerosis
      Python
      •1•1•0•0•Updated Nov 23, 2024Nov 23, 2024

    • hansen_brainstemfc

      Public
      Data and code supporting Hansen et al., 2024, Nature Neuroscience "Integrating brainstem and cortical functional architectures"
      Python
      •2•10•0•0•Updated Oct 24, 2024Oct 24, 2024

    • hansen_many_networks

      Public
      Data and code supporting Hansen et al., 2023 PLOS Biology "Integrating multimodal and multiscale connectivity blueprints of the human cerebral cortex in health and disease"
      Python
      •5•26•0•0•Updated Jan 11, 2024Jan 11, 2024

    • bazinet_assortativity

      Public
      Code supporting Bazinet et al., 2023, "Assortative mixing in micro-architecturally annotated brain connectomes" (Nature Communications))
      Python
      •3•11•0•0•Updated May 19, 2023May 19, 2023

    • suarez_connectometaxonomy

      Public
      Python
      •
      GNU Affero General Public License v3.0
      •2•2•0•0•Updated Nov 16, 2022Nov 16, 2022

    • hansen_receptors

      Public
      Data and code supporting Hansen et al., 2022 Nature Neuroscience "Mapping neurotransmitter systems to the structural and functional organization of the human neocortex"
      Python
      •
      Other
      •27•80•2•0•Updated Oct 27, 2022Oct 27, 2022

    • hansen_gene-receptor

      Public
      Data and code in support of Hansen et al., 2022, NeuroImage "Correspondence between gene expression and neurotransmitter receptor and transporter density in the human brain"
      Python
      •2•5•0•0•Updated Oct 13, 2022Oct 13, 2022

    • hansen_crossdisorder_vulnerability

      Public
      Data and code supporting Hansen et al., 2022, Nature Communications, "Local molecular and global connectomic contributions to cross-disorder cortical abnormalities"
      Python
      •5•21•0•0•Updated Sep 22, 2022Sep 22, 2022