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    195 repositories

    • molgenis-emx2

      Public
      MOLGENIS EMX2, the latest version of the MOLGENIS data platform.
      Vue
      •
      GNU Lesser General Public License v3.0
      •19•15•260•58•Updated Jan 23, 2025Jan 23, 2025

    • take-it-easyconfigs

      Public
      Perl
      •8•0•0•10•Updated Jan 23, 2025Jan 23, 2025

    • vip

      Public
      Variant Interpretation Pipeline
      pipelinegeneticsvariant-interpretation
      Shell
      •
      GNU Lesser General Public License v3.0
      •6•23•7•9•Updated Jan 23, 2025Jan 23, 2025

    • molgenis-service-armadillo

      Public
      Armadillo; a DataSHIELD implementation, part of the MOLGENIS suite
      hacktoberfest
      Java
      •
      GNU Lesser General Public License v3.0
      •10•7•71•10•Updated Jan 23, 2025Jan 23, 2025

    • NGS_Automated

      Public
      Shell
      •
      GNU Lesser General Public License v3.0
      •8•4•13•1•Updated Jan 23, 2025Jan 23, 2025

    • vip-web

      Public
      Variant Interpretation Pipeline web interface
      Java
      •
      GNU Lesser General Public License v3.0
      •0•0•0•1•Updated Jan 23, 2025Jan 23, 2025

    • projects-solve-rd

      Public
      All things related to maintaining the RD3 database
      Python
      •
      GNU General Public License v3.0
      •3•1•0•3•Updated Jan 22, 2025Jan 22, 2025

    • ds-admin-support

      Public
      Consented admin update tool for DataSHIELD servers (Armadillo/Opal)
      Vue
      •0•0•0•0•Updated Jan 22, 2025Jan 22, 2025

    • sc-MetaBrain-consortium

      Public
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jan 22, 2025Jan 22, 2025

    • ansible-pipelines

      Public
      Python
      •
      GNU General Public License v3.0
      •9•8•0•1•Updated Jan 22, 2025Jan 22, 2025

    • ngs-utils

      Public
      Collection of notes and scripts related to NGS
      Shell
      •
      GNU Lesser General Public License v3.0
      •22•14•2•0•Updated Jan 22, 2025Jan 22, 2025

    • vip-report-template

      Public
      Report template for Variant Call Format (VCF) Report generator
      TypeScript
      •
      GNU Lesser General Public License v3.0
      •0•4•1•5•Updated Jan 22, 2025Jan 22, 2025

    • vite-plugin-inline

      Public
      Vite plugin that embeds .js and .css as base85 data
      TypeScript
      •
      GNU Lesser General Public License v3.0
      •0•10•0•2•Updated Jan 22, 2025Jan 22, 2025

    • vip-inheritance-matcher

      Public
      annotates VCF samples with denovo and possible compound flags and matching inheritance modes
      Java
      •
      GNU Lesser General Public License v3.0
      •0•5•1•0•Updated Jan 21, 2025Jan 21, 2025

    • molgenis.org

      Public
      Source code of the (new) website for MOLGENIS
      CSS
      •
      GNU Lesser General Public License v3.0
      •22•0•0•1•Updated Jan 15, 2025Jan 15, 2025

    • cluster-utils

      Public
      Collection of utilities / helper scripts to make life easier on our HPC clusters.
      Perl
      •
      GNU Lesser General Public License v3.0
      •9•22•0•0•Updated Jan 10, 2025Jan 10, 2025

    • projects-rd-recon4imd

      Public
      Python
      •
      GNU General Public License v3.0
      •2•0•0•3•Updated Jan 8, 2025Jan 8, 2025

    • vip-umcg-config-gd

      Public
      VIP configuration files for diagnostics
      HTML
      •
      GNU Lesser General Public License v3.0
      •0•0•0•0•Updated Jan 8, 2025Jan 8, 2025

    • ReigenMT

      Public
      R implementation of eigenMT algorithm for multiple testing correction
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 28, 2024Dec 28, 2024

    • ConcordanceCheck

      Public
      Shell
      •
      GNU Lesser General Public License v3.0
      •6•0•0•1•Updated Dec 27, 2024Dec 27, 2024

    • molgenis-app-eqtlgen

      Public
      Frontend for eqtlgen paper
      HTML
      •
      GNU Lesser General Public License v3.0
      •4•0•0•4•Updated Dec 25, 2024Dec 25, 2024

    • eigenMT

      Public
      An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants
      Python
      •9•0•0•0•Updated Dec 25, 2024Dec 25, 2024

    • molgenis-tools-commander

      Public
      A command line interface for MOLGENIS
      hacktoberfest
      CSS
      •
      GNU Lesser General Public License v3.0
      •8•8•16•13•Updated Dec 24, 2024Dec 24, 2024

    • PICALO

      Public
      eQTL interaction optimization using expectation maximization
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•5•0•3•Updated Dec 18, 2024Dec 18, 2024

    • vip-decision-tree

      Public
      Decision tree module for the Variant Interpretation Pipeline (vip)
      Java
      •
      GNU Lesser General Public License v3.0
      •0•3•0•4•Updated Dec 17, 2024Dec 17, 2024

    • vip-report-api

      Public
      Report API for Variant Call Format (VCF) Report templates
      TypeScript
      •
      GNU Lesser General Public License v3.0
      •0•2•0•2•Updated Dec 16, 2024Dec 16, 2024

    • vip-report-vcf

      Public
      TypeScript VCF library with support for both reading and writing
      TypeScript
      •
      GNU Lesser General Public License v3.0
      •0•2•0•1•Updated Dec 16, 2024Dec 16, 2024

    • projects-rd-dashboards

      Public
      Vue
      •0•0•0•3•Updated Dec 13, 2024Dec 13, 2024

    • systemsgenetics

      Public
      Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
      Java
      •
      GNU General Public License v3.0
      •100•172•45•17•Updated Dec 9, 2024Dec 9, 2024

    • capice-resources

      Public
      Repository for resource files for CAPICE and updating CAPICE model
      Python
      •
      GNU Lesser General Public License v3.0
      •0•1•8•0•Updated Dec 9, 2024Dec 9, 2024