Repositories list

• lacklab.github.io

  Public
  HTML

  •

  MIT License

  •0•0•0•0•Updated Jan 22, 2025Jan 22, 2025

• chipseq_pipeline

  Public
  Wow! a ChIP-seq pipeline!

  bioinformaticssnakemakechip-seq+ 1pipeline

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jan 20, 2025Jan 20, 2025

• cutandrun-pipeline

  Public
  bioinformaticssnakemakepipeline+ 1cutandrun

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jan 13, 2025Jan 13, 2025

• atacseq-pipeline

  Public
  bioinformaticssnakemakepipeline+ 1atac-seq

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 6, 2024Dec 6, 2024

• epens-snakemake

  Public
  Snakemake pipeline for the analysis of ePENS (ChIP-exo) data

  Python

  •

  MIT License

  •0•0•0•0•Updated Nov 18, 2024Nov 18, 2024

• AR_transcription

  Public
  Analyses for manuscript "Decoding the Epigenetics and Chromatin Loop Dynamics of Androgen Receptor-Mediated Transcription"

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 22, 2023Dec 22, 2023

• SWISNF

  Public
  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 6, 2023Dec 6, 2023

• rnaseq-pipeline

  Public
  Wow! an RNA-seq pipeline.

  bioinformaticsrna-seqsnakemake+ 1pipeline

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Apr 18, 2023Apr 18, 2023

• MuSTARRd

  Public
  (Analysis of Saturation) Mu(tagenesis) STARR(seq) d(ata)

  bioinformaticssnakemakengs+ 2sequencingstarrseq

  Python

  •

  MIT License

  •0•1•0•0•Updated Feb 15, 2023Feb 15, 2023

• starrseq-pipeline

  Public
  Wow! a STARR-seq pipeline

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 26, 2022Dec 26, 2022