Repositories list

• globalbioticinteractions.github.io

  Public
  source files for GloBI website

  HTML

  •

  MIT License

  •14•8•7•9•Updated Mar 4, 2025Mar 4, 2025

• globinizer

  Public
  Checks whether datasets are ready for GloBI indexing

  Shell

  •

  MIT License

  •2•1•0•0•Updated Feb 28, 2025Feb 28, 2025

• elton

  Public
  Access, review and index existing species interaction datasets

  Java

  •

  GNU General Public License v3.0

  •2•3•19•0•Updated Feb 28, 2025Feb 28, 2025

• globalbioticinteractions

  Public
  Global Biotic Interactions provides access to existing species interaction datasets

  bioinformaticsparasitesbiology+ 11dietecologybiodiversitydiseasesetl-frameworkfood-websecoinformatics+ 4

  Java

  •

  GNU General Public License v3.0

  •16•129•353•1•Updated Feb 27, 2025Feb 27, 2025

• globi-server-scripts

  Public
  bash scripts used for GloBI server

  Shell

  •0•0•0•0•Updated Feb 26, 2025Feb 26, 2025

• ecoab-host-plant

  Public
  index configuration for Vandame R, Mérida J, Sagot P, Madrigal González D, Bedolla García B Y, González-Vanegas P A, Cultid-Medina C A, Barrios J M (2023). Potential host plant records recovered from ECOAB wild bee collection, Mexico. Version 1.10. Comisión nacional para el conocimiento y uso de la biodiversidad.

  0•0•0•0•Updated Feb 25, 2025Feb 25, 2025

• msb-para

  Public
  0•0•8•0•Updated Feb 25, 2025Feb 25, 2025

• camargo-sanabria2025

  Public
  configuration to help index Camargo-Sanabria, A.A., Fernández, J.A., Hernández-Quiroz, N.S., Buitrago-Torres, D.L. and Álvarez-Córdova, F. (2025), Ecological Interactions of Terrestrial Mammals in the Chihuahuan Desert: A Systematic Map. Mam Rev e70001. https://doi.org/10.1111/mam.70001

  0•0•0•0•Updated Feb 20, 2025Feb 20, 2025

• nomer

  Public
  maps identifiers and names to other identifiers and names

  HTML

  •

  GNU General Public License v3.0

  •3•19•66•0•Updated Feb 19, 2025Feb 19, 2025

• sousa_da_silva_2025

  Public
  configuration to index Sousa da Silva et al. 2025 Diversity patterns and knowledge gaps of Atlantic Forest epiphyllous bryophytes: a highly neglected group https://doi.org/10.1093/aob/mcaf007

  0•0•0•0•Updated Feb 18, 2025Feb 18, 2025

• shaw2020

  Public
  GloBI configuration for indexing Shaw, LP, Wang, AD, Dylus, D, et al. The phylogenetic range of bacterial and viral pathogens of vertebrates. Mol Ecol. 2020; 29: 3361– 3379. https://doi.org/10.1111/mec.15463

  0•0•0•0•Updated Feb 18, 2025Feb 18, 2025

• kau2025

  Public
  GloBI configuration to help index Kau et al. 2025. Umbrella, keystone, or flagship? An integrated framework for identifying effective surrogate species. Biological Conservation. https://doi.org/10.1016/j.biocon.2025.111025

  Shell

  •0•0•0•0•Updated Feb 14, 2025Feb 14, 2025

• taxon-graph-builder

  Public
  Builder for Global Biotic Interactions Taxon Graph

  Makefile

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Feb 13, 2025Feb 13, 2025

• globi-taxon-names

  Public
  list of manual taxonomic name mappings and taxonomic stop words

  MIT License

  •0•0•14•0•Updated Jan 10, 2025Jan 10, 2025

• inaturalist

  Public
  Helps GloBI to index species interaction data found in https://inaturalist.org

  3•2•2•0•Updated Jan 8, 2025Jan 8, 2025

• species-interaction-dataset-inventory

  Public
  This project provides a list of known projects and studies that contain interaction data, that may or may not have been made available openly.

  0•0•0•0•Updated Dec 28, 2024Dec 28, 2024

• ucsb-izc

  Public
  University of California Santa Barbara Invertebrate Zoology Collection

  0•0•1•0•Updated Dec 20, 2024Dec 20, 2024

• ion2024

  Public
  GloBI index configuration for Ion MC et al. 2024. World of Crayfish™: a web platform towards real-time global mapping of freshwater crayfish and their pathogens. PeerJ 12:e18229 https://doi.org/10.7717/peerj.18229

  Shell

  •0•0•0•0•Updated Nov 28, 2024Nov 28, 2024

• ecdysis

  Public
  0•0•0•0•Updated Nov 7, 2024Nov 7, 2024

• dopi

  Public
  index configuration to help GloBI index The Database of Pollinator Interactions (DoPI) documents British pollinator-plant associations at https://www.sussex.ac.uk/lifesci/ebe/dopi

  Shell

  •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

• pollinators-of-apocynaceae-database

  Public
  GloBI index configuration for Pollinators of Apocynaceae Database

  0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

• companion-planting-decision-support

  Public
  This repository hosts the knowledge-based decision support system for companion planting.

  Jupyter Notebook

  •1•0•0•0•Updated Nov 4, 2024Nov 4, 2024

• Seton-1929

  Public
  claims extracted from Seton, E. Thompson. (19251928). Lives of game animals: an account of those land animals in America, north of the Mexican border, which are considered "game," either because they have held the attention of sportsmen, or received the protection of law. Garden City, N.Y.: Doubleday.

  1•0•0•0•Updated Oct 20, 2024Oct 20, 2024

• OBservData

  Public
  Crop Pollination Database

  R

  •

  MIT License

  •4•0•0•0•Updated Oct 7, 2024Oct 7, 2024

• climbats

  Public
  GloBI index configuration for ClimBats: Froidevaux, J.S.P., Toshkova, N., Barbaro, L. et al., 2023. A species-level trait dataset of bats in Europe and beyond. Science Data 10, 253. https://doi.org/10.1038/s41597-023-02157-4

  0•0•0•0•Updated Sep 16, 2024Sep 16, 2024

• darkcides

  Public
  Configuration for GloBI to index Tanalgo, Krizler; Tabora, John Aries G.; Oliveira, Hernani Fernandes Magalhães; Haelewaters, Danny; Beranek, Chad T.; Otálora-Ardila, Aída; et al. (2021). Metadata for: DarkCideS 1.0, a global database for bats in karsts and caves. figshare. Dataset. https://doi.org/10.6084/m9.figshare.16413405.v4

  0•0•1•0•Updated Sep 16, 2024Sep 16, 2024

• cmnh-izc

  Public
  0•0•0•0•Updated Sep 5, 2024Sep 5, 2024

• virus-host-db

  Public
  Mihara, T., Nishimura, Y., Shimizu, Y., Nishiyama, H., Yoshikawa, G., Uehara, H., Hingamp, P., Goto, S., and Ogata, H.; Linking virus genomes with host taxonomy. Viruses 8, 66 doi:10.3390/v8030066 (2016).

  0•1•1•0•Updated Aug 20, 2024Aug 20, 2024

• wardeh2015

  Public
  0•0•0•0•Updated Aug 16, 2024Aug 16, 2024

• brose

  Public
  Dataset extracted from Brose 2005

  0•0•1•0•Updated Aug 10, 2024Aug 10, 2024