Repositories list

• guan_etal_hfq_ppk_2025

  Public
  Code associated with data analysis for Guan et al., "HP-Bodies – Ancestral Condensates that Regulate RNA Turnover and Protein Translation in Bacteria"

  Python

  •0•0•0•0•Updated Feb 6, 2025Feb 6, 2025

• ipod

  Public
  Python

  •0•1•8•0•Updated Jan 22, 2025Jan 22, 2025

• ShapeME

  Public
  Algorithm to discover structural motifs informative of expression patterns

  HTML

  •

  MIT License

  •0•1•1•0•Updated Oct 3, 2024Oct 3, 2024

• furna

  Public
  JavaScript

  •

  BSD 2-Clause "Simplified" License

  •0•0•0•0•Updated Jun 16, 2024Jun 16, 2024

• 2023_CRISPR_adaptation

  Public
  Shell

  •0•0•0•0•Updated Jun 14, 2024Jun 14, 2024

• yigi_2022

  Public
  Supplementary data regarding functional characterization of E. coli YigI

  R

  •0•0•0•0•Updated Jan 10, 2022Jan 10, 2022

• ipod_v1_2020

  Public
  Code for processing bacterial protein occupancy data obtained using the IPOD-HR method

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jul 6, 2021Jul 6, 2021

• pombe_singlemolecule_mcmc

  Public
  MIT License

  •0•0•0•0•Updated Feb 17, 2021Feb 17, 2021

• 2019_nocturnin

  Public
  RNA-seq data analysis code for Abshire et al Nocturnin 2019.

  R

  •

  Other

  •0•0•0•0•Updated Oct 15, 2020Oct 15, 2020

• 2018_genomeProfiling

  Public
  Codes for data analysis of project "High-resolution mapping of transcriptional propensity in the Escherichia coli chromosome".

  Python

  •1•0•0•0•Updated Jun 18, 2019Jun 18, 2019

• 2019_PRE_prediction

  Public
  0•0•0•0•Updated Feb 8, 2019Feb 8, 2019

• 2018_Lrp_ChIP

  Public
  Code used for the analysis of Lrp ChIP-seq and RNA-seq data

  Python

  •3•0•0•0•Updated Nov 30, 2018Nov 30, 2018