digitalcytometry

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4 repositories

cytotrace2
Public
CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.
R
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Other
•8•116•5•0•Updated Jan 29, 2025Jan 29, 2025
spatialecotyper
Public
Spatial EcoTyper is a machine learning framework for systematic identification of spatially distinct multicellular communities from single-cell spatial transcriptomics data.
integration single-cell spatial-transcriptomics tumor-microenvironment multicellular
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Other
•1•2•0•0•Updated Jan 21, 2025Jan 21, 2025
cytospace
Public
CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
Python
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Other
•19•121•8•0•Updated Apr 23, 2024Apr 23, 2024
ecotyper
Public
EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
tumor deconvolution bulk-rna-seq microenvironment single-cell
R
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Other
•41•192•9•0•Updated Mar 28, 2024Mar 28, 2024