Repositories list

• isoviz

  Public
  isoviz is a package that allows for simplified junction to transcript level visualization with Cas13 gRNA design capability.

  HTML

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  Other

  •0•4•2•0•Updated Feb 21, 2025Feb 21, 2025

• parmigiano

  Public
  Probabilistic Analysis of Rare variants Modeled In Genome-wIde ANnotation-informed Overdispersion test

  Python

  •0•0•0•0•Updated Feb 14, 2025Feb 14, 2025

• leafcutter2_testing

  Public
  Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard

  R

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  Apache License 2.0

  •118•0•0•0•Updated Feb 5, 2025Feb 5, 2025

• gruyere

  Public
  Genome-wide Rare Variant EnRichment Evaluation

  Python

  •0•1•0•0•Updated Jan 10, 2025Jan 10, 2025

• daklab.github.io

  Public
  Github Pages homepage

  HTML

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  Other

  •4•1•0•0•Updated Dec 4, 2024Dec 4, 2024

• poolqtl

  Public
  Jupyter Notebook

  •3•0•0•0•Updated May 29, 2024May 29, 2024

• LeafletSC

  Public
  Leaflet is a probabilistic model that identifies latent cell states defined by splicing changes.

  Jupyter Notebook

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  MIT License

  •1•10•0•0•Updated May 10, 2024May 10, 2024

• variancePartition_leafcutter_extension

  Public
  Quantify and interpret divers of variation in multilevel splicing experiments

  R

  •15•0•0•0•Updated Oct 25, 2023Oct 25, 2023

• tiger

  Public
  Python

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  Other

  •5•11•0•0•Updated Sep 18, 2023Sep 18, 2023

• seabass

  Public
  Jupyter Notebook

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  GNU General Public License v3.0

  •0•0•0•0•Updated Sep 10, 2023Sep 10, 2023

• MungeSumstats

  Public
  Rapid standardisation and quality control of summary statistics from GWAS

  R

  •16•0•0•0•Updated Sep 17, 2021Sep 17, 2021