Repositories list

• SplineOmics

  Public
  Timeseries analysis of -omics data can be carried out by fitting spline curves to the data and using limma for hypothesis testing. For this, the right spline freedom and further hyperparameters must be identified, and the obtained hits clustered based on the spline shape.The R package SplineOmics streamlines this whole process and generates reports

  timeseriesclustersplines+ 2omicslimma

  R

  •

  MIT License

  •0•1•0•0•Updated Feb 13, 2025Feb 13, 2025

• tfcf

  Public
  Systematic functional screening of chromatin factors identifies strong lineage and disease dependencies in normal and malignant haematopoiesis.

  R

  •1•6•1•0•Updated Feb 7, 2025Feb 7, 2025

• fibroblast-perturb-seq-analysis

  Public
  Epigenetic regulators of fibrotic transformation in cardiac fibroblasts

  scrna-seqscatac-seqfibroblasts+ 2perturb-seqcardiac-fibrosis

  Jupyter Notebook

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  MIT License

  •0•1•0•0•Updated Feb 3, 2025Feb 3, 2025

• imputeeval

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Jan 22, 2025Jan 22, 2025

• ATACSeq_Scripts_Eosinophil_Skin_Lung_Crosstalk

  Public
  R scripts for ATAC-seq analysis of eosinophil chromatin accessibility in allergic skin-lung crosstalk research.

  R

  •0•0•0•0•Updated Jan 20, 2025Jan 20, 2025

• Hands-on-Biomedical-Data

  Public
  Practical exercises for the course "Hands-on Biomedical Data - Resources and Analysis Tools"

  0•0•0•0•Updated Nov 27, 2024Nov 27, 2024

• SplineOmics_html_reports

  Public
  Stores the HTML reports that are the output of the functions of the SplineOmics package, so that they can be linked in the documentation of the actual SplineOmics package, without placing those big files there.

  HTML

  •0•0•0•0•Updated Sep 26, 2024Sep 26, 2024

• BioinformaticsPracticals1

  Public
  Student resources for UE Bioinformatische Übungen I

  pythonbash

  CSS

  •0•0•0•0•Updated Sep 11, 2024Sep 11, 2024

• neuroblastoma

  Public
  Single-cell transcriptomics and epigenomics unravel the role of monocytes in neuroblastoma bone marrow metastasis

  scrna-seqsingle-cellheterogeneity+ 6metastasisscatac-seqbone-marrowneuroblastomamonocytesmicroenvironment

  Jupyter Notebook

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  MIT License

  •1•9•0•0•Updated Dec 11, 2023Dec 11, 2023

• pnet_robustness

  Public
  Reliable interpretability of biology-inspired deep neural networks

  neural-networksnetwork-analysisinterpretability+ 1deep-learning

  R

  •

  MIT License

  •0•3•0•0•Updated Oct 11, 2023Oct 11, 2023

• Allergy_clinical_trial

  Public
  HTML

  •0•0•0•0•Updated Apr 20, 2023Apr 20, 2023