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    6 repositories

    • spectrum_utils

      Public
      Python package for efficient mass spectrometry data processing and visualization
      mass-spectrometry
      Python
      •
      Apache License 2.0
      •26•147•9•3•Updated Mar 21, 2025Mar 21, 2025

    • ANN-SoLo

      Public
      Spectral library searching using approximate nearest neighbor techniques.
      Jupyter Notebook
      •
      Apache License 2.0
      •19•42•19•2•Updated Mar 20, 2025Mar 20, 2025

    • falcon

      Public
      Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.
      clusteringnearest-neighbor-searchmass-spectrometry
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •8•27•7•2•Updated Mar 12, 2025Mar 12, 2025

    • gnps-rdd

      Public
      Reference data-driven metabolomics using the GNPS platform
      Python
      •
      Other
      •2•0•3•1•Updated Mar 4, 2025Mar 4, 2025

    • MTL-peptide-property-prediction

      Public
      All scripts to reproduce the results from the 'Machine learning strategies to tackle data challenges in mass spectrometry-based proteomics' study. Data and pretrained models are available at https://zenodo.org/doi/10.5281/zenodo.11084462
      Python
      •
      Other
      •1•1•0•0•Updated Jul 16, 2024Jul 16, 2024

    • GLEAMS

      Public
      GLEAMS is a Learned Embedding for Annotating Mass Spectra.
      deep-learningclusteringmass-spectrometry
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •8•24•2•0•Updated Aug 16, 2023Aug 16, 2023